Wall clock time and date at job start Fri Apr 10 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47041 * 2 1 4 4 C 1.50697 * 109.47154 * 119.99873 * 2 1 3 5 5 N 1.30499 * 125.65494 * 300.17855 * 4 2 1 6 6 C 1.34127 * 109.25896 * 180.29152 * 5 4 2 7 7 C 1.34674 * 108.01815 * 359.72453 * 6 5 4 8 8 N 1.35047 * 125.64735 * 120.00213 * 4 2 1 9 9 C 1.46499 * 126.39900 * 359.97156 * 8 4 2 10 10 C 1.50701 * 109.46715 * 84.71923 * 9 8 4 11 11 O 1.21279 * 120.00313 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99918 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00409 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.63760 * 31.85182 * 13 12 10 15 15 C 1.54337 * 110.99733 * 268.77555 * 13 12 10 16 16 N 1.47020 * 107.26210 * 219.59689 * 15 13 12 17 17 C 1.36945 * 125.64525 * 178.85184 * 16 15 13 18 18 H 1.07997 * 119.99756 * 359.71717 * 17 16 15 19 19 C 1.38805 * 119.99878 * 179.71622 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47420 * 108.70626 * 358.58837 * 16 15 13 26 26 C 1.54914 * 104.83159 * 24.35323 * 25 16 15 27 27 H 1.09002 * 111.00120 * 81.06703 * 26 25 16 28 28 O 1.42898 * 111.00461 * 204.87589 * 26 25 16 29 29 H 1.08996 * 109.47027 * 299.99591 * 1 2 3 30 30 H 1.08998 * 109.47301 * 60.00210 * 1 2 3 31 31 H 1.08999 * 109.46666 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46819 * 239.99712 * 2 1 3 33 33 H 1.09002 * 109.47354 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47048 * 300.00150 * 3 2 1 35 35 H 1.08996 * 109.47199 * 59.99876 * 3 2 1 36 36 H 1.07997 * 125.98579 * 179.72069 * 6 5 4 37 37 H 1.07994 * 126.58597 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47255 * 324.71677 * 9 8 4 39 39 H 1.08996 * 109.47288 * 204.71449 * 9 8 4 40 40 H 0.97007 * 120.00343 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.98748 * 100.12406 * 15 13 12 42 42 H 1.09001 * 109.78230 * 338.95875 * 15 13 12 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.36700 * 143.19620 * 25 16 15 45 45 H 1.08998 * 110.36896 * 265.40859 * 25 16 15 46 46 H 0.96702 * 114.00296 * 298.55030 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7834 -0.3639 2.4637 6 6 2.3970 -1.2185 3.2958 7 6 3.0461 -2.1327 2.5497 8 7 2.8121 -1.8130 1.2395 9 6 3.3181 -2.5295 0.0662 10 6 4.5862 -1.8728 -0.4151 11 8 5.0240 -0.9016 0.1646 12 7 5.2334 -2.3641 -1.4903 13 6 6.4666 -1.7261 -1.9579 14 1 7.0189 -1.2983 -1.1213 15 6 6.1627 -0.6439 -3.0154 16 7 7.2054 -0.7375 -4.0477 17 6 7.2842 0.0361 -5.1749 18 1 6.5351 0.7902 -5.3657 19 6 8.3269 -0.1491 -6.0722 20 7 9.2397 -1.0686 -5.8399 21 14 8.4341 0.9057 -7.6102 22 1 9.6309 0.5135 -8.3970 23 1 7.2137 0.7073 -8.4325 24 1 8.5433 2.3352 -7.2233 25 6 8.1555 -1.7978 -3.6651 26 6 7.3472 -2.7385 -2.7368 27 1 6.7319 -3.4260 -3.3173 28 8 8.2128 -3.4526 -1.8520 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.3745 -1.1800 4.3748 37 1 3.6378 -2.9589 2.9151 38 1 2.5708 -2.5016 -0.7268 39 1 3.5247 -3.5656 0.3343 40 1 4.8832 -3.1407 -1.9543 41 1 6.1847 0.3438 -2.5548 42 1 5.1840 -0.8264 -3.4594 43 1 9.9681 -1.1982 -6.4671 44 1 8.4970 -2.3378 -4.5482 45 1 9.0042 -1.3718 -3.1301 46 1 8.8488 -4.0258 -2.3015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077765183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:15 Heat of formation + Delta-G solvation = -19.987406 kcal Electronic energy + Delta-G solvation = -27910.442889 eV Core-core repulsion = 24029.067238 eV Total energy + Delta-G solvation = -3881.375650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.15220 -41.03196 -39.40870 -36.70167 -36.28172 -35.66726 -35.00052 -33.65172 -30.59016 -29.80393 -29.22911 -28.11045 -28.05401 -26.25272 -23.84502 -22.80549 -22.40971 -21.97536 -21.58886 -20.10629 -19.16692 -18.67225 -18.35143 -18.03954 -17.29934 -16.62413 -16.41017 -16.06482 -15.82983 -15.53562 -15.35181 -15.17445 -14.85685 -14.60559 -14.56414 -14.27740 -14.07633 -13.82487 -13.80636 -13.38933 -13.22136 -13.09835 -13.02207 -12.84982 -12.70964 -12.41125 -12.13897 -12.11673 -11.94661 -11.90419 -11.53715 -11.44683 -11.03256 -10.91487 -10.77903 -10.46754 -10.26935 -9.26089 -8.99343 -7.83751 -5.30025 0.97377 1.41689 1.47514 1.50186 1.56308 1.67776 2.14207 2.22795 2.46260 3.04552 3.28050 3.41161 3.51152 3.60509 3.70904 3.79248 3.86790 4.04103 4.07102 4.13205 4.19448 4.19540 4.35349 4.41307 4.55397 4.60277 4.73490 4.78296 4.80795 4.88564 4.89197 4.95084 5.05580 5.26383 5.32029 5.35454 5.37373 5.42219 5.42671 5.65819 5.87431 6.16319 6.19604 6.43942 6.83247 7.02950 7.10542 7.18149 7.67494 8.28878 9.17750 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.003123 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.813710 B = 8964.358415 C =10192.445384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.010 4.010 3 C -0.135 4.135 4 C 0.214 3.786 5 N -0.522 5.522 6 C -0.056 4.056 7 C -0.050 4.050 8 N -0.446 5.446 9 C 0.088 3.912 10 C 0.494 3.506 11 O -0.572 6.572 12 N -0.693 5.693 13 C 0.158 3.842 14 H 0.070 0.930 15 C 0.132 3.868 16 N -0.618 5.618 17 C -0.246 4.246 18 H 0.081 0.919 19 C -0.059 4.059 20 N -0.946 5.946 21 Si 0.982 3.018 22 H -0.291 1.291 23 H -0.272 1.272 24 H -0.284 1.284 25 C 0.131 3.869 26 C 0.094 3.906 27 H 0.093 0.907 28 O -0.570 6.570 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.028 0.972 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.183 0.817 37 H 0.202 0.798 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.422 0.578 41 H 0.009 0.991 42 H 0.048 0.952 43 H 0.251 0.749 44 H 0.092 0.908 45 H -0.012 1.012 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.570 -9.729 9.881 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.030 4.030 3 C -0.193 4.193 4 C -0.049 4.049 5 N -0.241 5.241 6 C -0.203 4.203 7 C -0.182 4.182 8 N -0.128 5.128 9 C -0.037 4.037 10 C 0.280 3.720 11 O -0.450 6.450 12 N -0.346 5.346 13 C 0.051 3.949 14 H 0.089 0.911 15 C 0.006 3.994 16 N -0.346 5.346 17 C -0.374 4.374 18 H 0.099 0.901 19 C -0.252 4.252 20 N -0.595 5.595 21 Si 0.809 3.191 22 H -0.217 1.217 23 H -0.197 1.197 24 H -0.210 1.210 25 C 0.005 3.995 26 C 0.033 3.967 27 H 0.111 0.889 28 O -0.377 6.377 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.200 0.800 37 H 0.219 0.781 38 H 0.173 0.827 39 H 0.184 0.816 40 H 0.260 0.740 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.110 0.890 45 H 0.006 0.994 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -15.906 -8.136 10.729 20.840 hybrid contribution 1.619 -0.290 -1.328 2.114 sum -14.287 -8.426 9.400 19.065 Atomic orbital electron populations 1.21722 0.91503 1.02634 1.02954 1.19654 0.97647 0.95215 0.90522 1.21701 0.99681 0.95097 1.02795 1.23512 0.96770 0.88797 0.95837 1.70114 1.25980 1.27966 1.00048 1.22650 1.02131 0.94988 1.00484 1.23136 1.07130 1.05442 0.82447 1.45039 1.37872 1.23169 1.06708 1.21990 0.94150 0.98446 0.89160 1.21431 0.86445 0.84099 0.80017 1.90800 1.68182 1.28435 1.57556 1.45620 1.25121 1.33504 1.30381 1.21489 0.84977 0.92874 0.95558 0.91131 1.21667 0.93034 0.95806 0.88923 1.44527 1.27450 1.40895 1.21711 1.19405 1.08484 1.12806 0.96746 0.90081 1.25604 0.96777 1.00681 1.02138 1.69939 1.15402 1.36270 1.37890 0.85109 0.77176 0.77899 0.78873 1.21721 1.19733 1.21011 1.22417 0.90335 0.89439 0.97355 1.23260 0.91410 0.92432 0.89611 0.88945 1.86373 1.51930 1.62859 1.36562 0.92759 0.90019 0.91909 0.89249 0.95279 0.90048 0.92548 0.79985 0.78138 0.82681 0.81643 0.74002 0.97301 0.93413 0.93966 0.89005 0.99435 0.75221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.18 71.98 0.66 -1.52 16 2 C -0.01 -0.22 3.25 -11.54 -0.04 -0.25 16 3 C -0.13 -3.32 9.17 71.98 0.66 -2.66 16 4 C 0.21 5.50 6.39 138.13 0.88 6.39 16 5 N -0.52 -15.33 11.25 -188.13 -2.12 -17.44 16 6 C -0.06 -1.40 11.87 83.52 0.99 -0.41 16 7 C -0.05 -1.05 11.58 83.09 0.96 -0.09 16 8 N -0.45 -9.69 2.24 -518.35 -1.16 -10.85 16 9 C 0.09 1.26 6.16 85.63 0.53 1.79 16 10 C 0.49 12.23 7.90 87.66 0.69 12.92 16 11 O -0.57 -21.03 16.06 -3.03 -0.05 -21.08 16 12 N -0.69 -16.21 5.12 -436.90 -2.24 -18.45 16 13 C 0.16 5.43 3.04 46.18 0.14 5.57 16 14 H 0.07 2.92 7.55 -2.39 -0.02 2.90 16 15 C 0.13 5.46 7.01 86.73 0.61 6.06 16 16 N -0.62 -30.80 3.39 -691.97 -2.35 -33.15 16 17 C -0.25 -13.38 10.27 84.03 0.86 -12.52 16 18 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 19 C -0.06 -3.21 5.49 84.86 0.47 -2.75 16 20 N -0.95 -53.44 10.09 21.65 0.22 -53.22 16 21 Si 0.98 43.96 29.55 68.60 2.03 45.99 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 C 0.13 6.04 5.62 86.86 0.49 6.53 16 26 C 0.09 3.13 4.06 31.99 0.13 3.26 16 27 H 0.09 2.62 8.01 -2.39 -0.02 2.60 16 28 O -0.57 -17.32 13.47 -148.98 -2.01 -19.32 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.64 6.85 -2.39 -0.02 1.62 16 33 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.18 3.60 8.06 -2.91 -0.02 3.57 16 37 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.16 1.21 7.30 -2.39 -0.02 1.19 16 39 H 0.17 1.01 8.13 -2.39 -0.02 1.00 16 40 H 0.42 6.27 8.56 -92.70 -0.79 5.48 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.05 1.80 8.03 -2.39 -0.02 1.78 16 43 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 44 H 0.09 4.67 5.87 -2.39 -0.01 4.66 16 45 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 46 H 0.40 8.95 9.11 -74.06 -0.67 8.27 16 Total: -1.00 -80.48 380.31 -0.11 -80.59 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -0.47 Total: 24.61 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 8.03 Total: 22.34 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -7.65 Total: -133.12 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -2.06 Total: -40.40 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -80.48 -0.11 -80.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077765183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.601 kcal (2) G-P(sol) polarization free energy of solvation -80.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds