Wall clock time and date at job start Fri Apr 10 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46830 * 2 1 4 4 C 1.50694 * 109.47641 * 119.99860 * 2 1 3 5 5 N 1.30451 * 125.99134 * 300.17075 * 4 2 1 6 6 N 1.39932 * 108.89827 * 180.25865 * 5 4 2 7 7 C 1.46501 * 125.75249 * 179.73716 * 6 5 4 8 8 C 1.34257 * 108.49650 * 359.74060 * 6 5 4 9 9 C 1.38051 * 107.41441 * 359.97438 * 8 6 5 10 10 C 1.47425 * 126.41698 * 179.97438 * 9 8 6 11 11 O 1.21602 * 120.00041 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99934 * 0.02562 * 10 9 8 13 13 C 1.46494 * 119.99807 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.91815 * 31.09537 * 13 12 10 15 15 C 1.55128 * 111.16171 * 267.16754 * 13 12 10 16 16 N 1.47431 * 104.94135 * 205.13396 * 15 13 12 17 17 C 1.36934 * 125.64289 * 204.03698 * 16 15 13 18 18 H 1.08002 * 120.00378 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99656 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00041 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00086 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47166 * 60.00442 * 21 19 17 23 23 H 1.48500 * 109.47174 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47168 * 300.00554 * 21 19 17 25 25 C 1.47023 * 108.70269 * 24.00496 * 16 15 13 26 26 C 1.54318 * 107.27001 * 358.93892 * 25 16 15 27 27 H 1.09000 * 110.71938 * 96.35245 * 26 25 16 28 28 O 1.42903 * 110.71964 * 219.44056 * 26 25 16 29 29 H 1.09006 * 109.46844 * 299.99563 * 1 2 3 30 30 H 1.08996 * 109.47734 * 60.00065 * 1 2 3 31 31 H 1.09001 * 109.46796 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46992 * 240.00298 * 2 1 3 33 33 H 1.09005 * 109.46891 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46656 * 300.00109 * 3 2 1 35 35 H 1.08997 * 109.47090 * 60.00358 * 3 2 1 36 36 H 1.09010 * 109.47207 * 270.00180 * 7 6 5 37 37 H 1.08998 * 109.47639 * 30.00280 * 7 6 5 38 38 H 1.09000 * 109.47113 * 150.00681 * 7 6 5 39 39 H 1.07990 * 126.29499 * 180.02562 * 8 6 5 40 40 H 0.96997 * 119.99638 * 0.02562 * 12 10 9 41 41 H 1.08998 * 110.41795 * 86.20767 * 15 13 12 42 42 H 1.08998 * 110.30064 * 324.00187 * 15 13 12 43 43 H 0.97004 * 120.00608 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.88077 * 239.52406 * 25 16 15 45 45 H 1.08994 * 110.00952 * 118.43050 * 25 16 15 46 46 H 0.96700 * 114.00311 * 296.16377 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7879 -0.3699 2.4657 6 7 2.4336 -1.2703 3.3203 7 6 2.4097 -1.2281 4.7845 8 6 3.0788 -2.1795 2.5722 9 6 2.8477 -1.8642 1.2482 10 6 3.3615 -2.5910 0.0729 11 8 3.0840 -2.2086 -1.0475 12 7 4.1388 -3.6793 0.2404 13 6 4.6497 -4.4011 -0.9275 14 1 4.8085 -3.7225 -1.7656 15 6 3.7022 -5.5627 -1.3266 16 7 4.5623 -6.5290 -2.0337 17 6 4.1377 -7.4541 -2.9497 18 1 3.0908 -7.5179 -3.2073 19 6 5.0530 -8.3099 -3.5471 20 7 6.3287 -8.2324 -3.2328 21 14 4.4740 -9.5714 -4.7973 22 1 3.8331 -8.8757 -5.9421 23 1 5.6369 -10.3568 -5.2829 24 1 3.4916 -10.4847 -4.1603 25 6 5.9514 -6.3344 -1.5929 26 6 5.9518 -5.1701 -0.5802 27 1 5.9157 -5.5478 0.4417 28 8 7.0970 -4.3364 -0.7688 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.2405 -0.6209 5.1442 37 1 1.4689 -0.7918 5.1202 38 1 2.5020 -2.2401 5.1787 39 1 3.6693 -3.0060 2.9388 40 1 4.3598 -3.9845 1.1342 41 1 2.9148 -5.2010 -1.9878 42 1 3.2693 -6.0202 -0.4370 43 1 6.9683 -8.8306 -3.6500 44 1 6.5795 -6.0827 -2.4474 45 1 6.3216 -7.2414 -1.1153 46 1 7.9392 -4.7810 -0.6010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078170952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:48 Heat of formation + Delta-G solvation = 14.521860 kcal Electronic energy + Delta-G solvation = -27676.347275 eV Core-core repulsion = 23796.468058 eV Total energy + Delta-G solvation = -3879.879216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.58696 -39.25345 -37.66320 -35.87201 -35.02665 -33.94421 -32.66497 -31.74482 -30.40637 -28.31085 -27.32592 -27.12477 -26.75774 -24.49592 -22.96314 -22.35713 -20.59439 -20.48865 -19.94608 -19.12713 -17.78627 -16.94040 -16.73685 -16.01470 -15.88330 -15.56303 -14.80805 -14.75270 -14.46849 -14.38710 -13.99468 -13.98064 -13.47712 -13.25242 -13.19741 -12.98462 -12.66081 -12.62984 -12.38574 -12.14511 -12.03489 -11.48005 -11.45864 -11.22393 -11.18849 -11.05719 -10.86450 -10.78292 -10.76043 -10.17369 -9.88202 -9.81155 -9.59129 -9.50949 -9.26100 -8.87977 -8.69556 -8.54716 -6.89617 -5.74822 -3.09108 1.38650 2.13226 2.14794 3.40199 3.43719 3.45464 3.48302 3.62447 4.13074 4.38356 4.46438 4.61336 4.65396 4.75218 4.94227 5.00988 5.10123 5.20409 5.22317 5.32142 5.45119 5.48311 5.54489 5.60993 5.64714 5.69796 5.83537 5.85149 5.89261 6.01626 6.12996 6.16071 6.24844 6.27124 6.49072 6.58091 6.64425 6.67992 6.96437 7.33706 7.45634 7.48196 7.73236 7.83225 8.13632 8.19166 8.55645 9.16721 9.76893 10.40142 11.36923 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017857 B = 0.002929 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.627019 B = 9558.409393 C =10149.104808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 C -0.138 4.138 4 C 0.143 3.857 5 N -0.299 5.299 6 N -0.365 5.365 7 C 0.098 3.902 8 C 0.096 3.904 9 C -0.280 4.280 10 C 0.594 3.406 11 O -0.538 6.538 12 N -0.713 5.713 13 C 0.141 3.859 14 H 0.107 0.893 15 C 0.130 3.870 16 N -0.600 5.600 17 C -0.229 4.229 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.915 3.085 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.154 3.846 26 C 0.068 3.932 27 H 0.055 0.945 28 O -0.563 6.563 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.120 0.880 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.182 0.818 40 H 0.392 0.608 41 H 0.051 0.949 42 H 0.023 0.977 43 H 0.253 0.747 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.129 14.158 17.107 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.053 4.053 3 C -0.196 4.196 4 C -0.025 4.025 5 N -0.119 5.119 6 N -0.143 5.143 7 C -0.043 4.043 8 C -0.055 4.055 9 C -0.295 4.295 10 C 0.381 3.619 11 O -0.415 6.415 12 N -0.363 5.363 13 C 0.035 3.965 14 H 0.125 0.875 15 C 0.003 3.997 16 N -0.327 5.327 17 C -0.357 4.357 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.028 3.972 26 C 0.008 3.992 27 H 0.073 0.927 28 O -0.368 6.368 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.199 0.801 40 H 0.225 0.775 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.276 15.533 16.969 23.845 hybrid contribution 0.860 -2.078 -0.231 2.261 sum -5.415 13.455 16.738 22.148 Atomic orbital electron populations 1.21770 0.93969 1.02021 1.01861 1.20007 0.95939 0.95681 0.93684 1.21772 1.01168 0.94793 1.01874 1.22402 0.93906 0.92896 0.93312 1.77135 1.20176 1.14452 1.00181 1.48286 1.37775 1.21233 1.06993 1.21957 1.04600 1.04052 0.73664 1.23063 0.96506 0.94917 0.91038 1.20332 1.13019 1.03617 0.92536 1.17203 0.77704 0.79402 0.87595 1.90709 1.58669 1.67188 1.24983 1.45724 1.51986 1.29084 1.09495 1.22256 0.92105 0.93782 0.88334 0.87549 1.21886 0.93556 0.88611 0.95669 1.44229 1.02265 1.38407 1.47844 1.19054 0.93313 1.08673 1.14617 0.90177 1.24807 0.95486 0.99811 1.00248 1.69909 1.00703 1.40572 1.46046 0.86147 0.77236 0.80946 0.81136 1.21016 1.21584 1.21141 1.21819 0.87714 0.92888 0.94785 1.23465 0.85132 0.92106 0.98477 0.92698 1.86477 1.16318 1.40824 1.93168 0.92601 0.91964 0.92631 0.86218 0.92701 0.91965 0.92589 0.90357 0.88984 0.89124 0.80116 0.77455 0.93106 0.95978 0.93628 0.92131 0.93389 0.77752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 2 C -0.03 -0.43 3.26 -91.77 -0.30 -0.73 16 3 C -0.14 -1.55 9.18 37.16 0.34 -1.20 16 4 C 0.14 1.96 5.77 -82.02 -0.47 1.49 16 5 N -0.30 -3.81 12.50 33.90 0.42 -3.39 16 6 N -0.36 -3.59 3.98 -67.60 -0.27 -3.85 16 7 C 0.10 0.48 11.44 59.85 0.68 1.17 16 8 C 0.10 0.95 10.99 -16.56 -0.18 0.77 16 9 C -0.28 -3.83 6.13 -105.06 -0.64 -4.47 16 10 C 0.59 9.70 7.81 -12.52 -0.10 9.60 16 11 O -0.54 -10.63 14.20 5.28 0.07 -10.56 16 12 N -0.71 -10.77 5.20 -52.69 -0.27 -11.04 16 13 C 0.14 2.66 3.16 -65.67 -0.21 2.45 16 14 H 0.11 2.33 7.54 -51.93 -0.39 1.94 16 15 C 0.13 2.79 6.94 -2.41 -0.02 2.77 16 16 N -0.60 -15.34 3.40 -169.94 -0.58 -15.92 16 17 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -26.74 10.31 55.49 0.57 -26.17 16 21 Si 0.92 22.10 29.55 -169.99 -5.02 17.07 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.15 3.62 5.15 -3.07 -0.02 3.60 16 26 C 0.07 1.25 3.97 -24.90 -0.10 1.15 16 27 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 28 O -0.56 -9.72 13.39 -35.23 -0.47 -10.19 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.12 1.83 5.60 -51.93 -0.29 1.54 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.18 1.07 7.46 -52.49 -0.39 0.68 16 40 H 0.39 4.55 7.49 -40.82 -0.31 4.25 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.06 1.62 7.30 -51.93 -0.38 1.24 16 45 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 46 H 0.38 4.93 9.12 45.56 0.42 5.34 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -35.69 378.29 -7.11 -42.80 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.34 Total: 7.02 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -0.92 Total: 8.53 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.12 Total: -60.37 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.40 Total: -20.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.69 -7.11 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078170952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.322 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds