Wall clock time and date at job start Fri Apr 10 2020 18:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99839 * 2 1 4 4 C 1.52999 * 109.46885 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46874 * 179.97438 * 4 3 2 6 6 C 1.35035 * 124.88462 * 125.25485 * 5 4 3 7 7 C 1.35366 * 107.22851 * 180.15396 * 6 5 4 8 8 C 1.41502 * 105.50192 * 359.62186 * 7 6 5 9 9 C 1.47714 * 126.51767 * 180.23490 * 8 7 6 10 10 O 1.21576 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00015 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00081 * 180.02562 * 11 9 8 13 13 H 1.08998 * 110.64578 * 34.29791 * 12 11 9 14 14 C 1.54332 * 110.72021 * 271.15877 * 12 11 9 15 15 N 1.47017 * 107.27281 * 219.44308 * 14 12 11 16 16 C 1.36939 * 125.65133 * 178.90597 * 15 14 12 17 17 H 1.07999 * 120.00327 * 174.87810 * 16 15 14 18 18 C 1.38808 * 119.99676 * 354.87750 * 16 15 14 19 19 N 1.31621 * 120.00249 * 7.06158 * 18 16 15 20 20 Si 1.86800 * 120.00219 * 187.06545 * 18 16 15 21 21 H 1.48494 * 109.47450 * 94.98230 * 20 18 16 22 22 H 1.48503 * 109.47409 * 214.98763 * 20 18 16 23 23 H 1.48508 * 109.46768 * 334.98431 * 20 18 16 24 24 C 1.47428 * 108.70482 * 358.94164 * 15 14 12 25 25 C 1.55127 * 104.93991 * 24.00229 * 24 15 14 26 26 H 1.08999 * 110.93198 * 81.21914 * 25 24 15 27 27 C 1.53007 * 111.16019 * 205.13336 * 25 24 15 28 28 N 1.28474 * 124.88389 * 304.97959 * 5 4 3 29 29 H 1.09003 * 109.47598 * 299.99942 * 1 2 3 30 30 H 1.08996 * 109.47095 * 60.00635 * 1 2 3 31 31 H 1.09003 * 109.46668 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46948 * 59.99993 * 3 2 1 33 33 H 1.09001 * 109.46920 * 299.99832 * 3 2 1 34 34 H 1.08999 * 109.47125 * 60.00356 * 4 3 2 35 35 H 1.08992 * 109.47438 * 299.99636 * 4 3 2 36 36 H 1.08001 * 126.38865 * 0.03923 * 6 5 4 37 37 H 1.08005 * 127.25271 * 179.88867 * 7 6 5 38 38 H 0.97005 * 120.00362 * 0.02562 * 11 9 8 39 39 H 1.08997 * 109.87997 * 338.86322 * 14 12 11 40 40 H 1.09002 * 109.88232 * 99.87132 * 14 12 11 41 41 H 0.97002 * 120.00402 * 180.02562 * 19 18 16 42 42 H 1.08992 * 110.37107 * 142.96510 * 24 15 14 43 43 H 1.09006 * 110.36653 * 265.18279 * 24 15 14 44 44 H 1.08998 * 109.46796 * 172.17383 * 27 25 24 45 45 H 1.08998 * 109.46683 * 292.17096 * 27 25 24 46 46 H 1.08996 * 109.47211 * 52.17060 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0291 2.9691 0.9046 7 6 5.3348 4.2449 0.5707 8 6 4.5731 4.5252 -0.5885 9 6 4.5590 5.7935 -1.3455 10 8 5.2513 6.7251 -0.9837 11 7 3.7788 5.9180 -2.4373 12 6 3.7652 7.1757 -3.1884 13 1 4.7506 7.6414 -3.1760 14 6 2.6994 8.1380 -2.6229 15 7 2.0656 8.8087 -3.7673 16 6 1.0515 9.7260 -3.6934 17 1 0.7083 10.2248 -4.5877 18 6 0.4648 10.0147 -2.4690 19 7 0.9716 9.5145 -1.3621 20 14 -1.0442 11.1132 -2.3922 21 1 -2.2683 10.2726 -2.3806 22 1 -0.9961 11.9348 -1.1561 23 1 -1.0677 12.0055 -3.5791 24 6 2.7019 8.3296 -5.0079 25 6 3.2879 6.9396 -4.6458 26 1 2.5171 6.1699 -4.6847 27 6 4.4639 6.5816 -5.5568 28 7 3.8784 3.4395 -0.8642 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8574 0.6437 -0.8891 35 1 3.8567 0.6440 0.8908 36 1 5.4276 2.4126 1.7400 37 1 6.0194 4.9076 1.0791 38 1 3.2261 5.1748 -2.7258 39 1 1.9525 7.5758 -2.0624 40 1 3.1725 8.8750 -1.9738 41 1 0.5613 9.7160 -0.5065 42 1 1.9614 8.2348 -5.8020 43 1 3.4988 9.0083 -5.3122 44 1 4.9409 5.6714 -5.1935 45 1 4.1012 6.4215 -6.5721 46 1 5.1872 7.3970 -5.5537 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080100601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:01 Heat of formation + Delta-G solvation = 3.295062 kcal Electronic energy + Delta-G solvation = -27323.718845 eV Core-core repulsion = 23443.352798 eV Total energy + Delta-G solvation = -3880.366047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.67144 -40.81829 -39.11461 -38.93469 -35.65451 -34.99159 -34.25136 -32.20291 -31.74606 -30.69106 -29.45050 -27.51787 -27.24552 -25.86784 -24.85117 -23.33323 -22.44211 -21.95791 -21.54425 -20.65514 -18.94382 -18.83984 -17.96789 -17.52516 -17.28511 -17.03224 -16.87731 -16.65704 -15.92305 -15.72215 -15.53449 -15.25213 -14.84040 -14.73882 -14.55583 -14.22383 -14.09550 -13.93604 -13.76130 -13.35606 -13.06027 -13.00487 -12.86834 -12.63810 -12.61357 -12.35223 -12.18456 -12.08537 -11.92496 -11.87695 -11.67985 -11.47334 -11.21594 -10.79546 -10.74353 -10.33626 -10.12126 -9.94464 -8.93503 -7.86193 -5.23716 0.49821 1.16905 1.34624 1.43506 1.46273 1.55653 2.13049 2.38906 2.48913 2.76747 3.31627 3.36498 3.57605 3.72541 3.80347 3.82757 3.98846 4.03978 4.09010 4.15126 4.22252 4.44425 4.45933 4.48067 4.59630 4.61878 4.66282 4.70740 4.75434 4.77480 4.82501 4.87741 5.04699 5.06974 5.18900 5.27739 5.31589 5.43107 5.48483 5.59941 5.75908 5.82804 5.99141 6.15229 6.46300 6.88064 7.04624 7.19780 7.74243 8.39204 9.23675 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.003279 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.536883 B = 8537.094080 C = 9513.818982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.277 5.277 6 C 0.013 3.987 7 C -0.204 4.204 8 C -0.037 4.037 9 C 0.596 3.404 10 O -0.575 6.575 11 N -0.690 5.690 12 C 0.135 3.865 13 H 0.078 0.922 14 C 0.189 3.811 15 N -0.627 5.627 16 C -0.244 4.244 17 H 0.090 0.910 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.981 3.019 21 H -0.285 1.285 22 H -0.298 1.298 23 H -0.263 1.263 24 C 0.134 3.866 25 C -0.094 4.094 26 H 0.088 0.912 27 C -0.128 4.128 28 N -0.274 5.274 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.113 0.887 35 H 0.150 0.850 36 H 0.235 0.765 37 H 0.163 0.837 38 H 0.412 0.588 39 H 0.015 0.985 40 H -0.010 1.010 41 H 0.244 0.756 42 H 0.057 0.943 43 H 0.029 0.971 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.545 -24.076 1.621 24.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.067 5.067 6 C -0.130 4.130 7 C -0.232 4.232 8 C -0.196 4.196 9 C 0.382 3.618 10 O -0.453 6.453 11 N -0.340 5.340 12 C 0.029 3.971 13 H 0.096 0.904 14 C 0.062 3.938 15 N -0.354 5.354 16 C -0.372 4.372 17 H 0.108 0.892 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.809 3.191 21 H -0.212 1.212 22 H -0.225 1.225 23 H -0.187 1.187 24 C 0.009 3.991 25 C -0.114 4.114 26 H 0.106 0.894 27 C -0.185 4.185 28 N -0.111 5.111 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.168 0.832 36 H 0.251 0.749 37 H 0.181 0.819 38 H 0.248 0.752 39 H 0.034 0.966 40 H 0.008 0.992 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.176 -24.039 1.224 24.620 hybrid contribution -0.830 1.451 0.998 1.947 sum 4.346 -22.588 2.222 23.109 Atomic orbital electron populations 1.22966 0.78901 1.04341 1.00739 1.87732 1.21715 1.26526 1.95658 1.22591 0.93152 0.85495 1.01533 1.21983 0.91990 0.76984 1.08540 1.45676 1.30649 1.11841 1.18487 1.23511 0.95798 0.95333 0.98321 1.22032 1.05319 0.97680 0.98133 1.21778 1.03582 0.93486 1.00795 1.17368 0.79156 0.85484 0.79799 1.90760 1.44733 1.40988 1.68825 1.45636 1.44629 1.16021 1.27726 1.22149 0.98748 0.84338 0.91863 0.90370 1.21090 0.91678 0.92089 0.88895 1.44730 1.40314 1.48330 1.02015 1.19539 1.08201 1.15105 0.94381 0.89227 1.25773 1.02613 1.02715 0.95104 1.70274 1.42149 1.50410 0.97306 0.85014 0.79043 0.77910 0.77110 1.21185 1.22503 1.18712 1.21891 0.95492 0.92693 0.89058 1.22579 0.98894 0.97675 0.92248 0.89417 1.21643 0.96029 1.01577 0.99298 1.73423 1.22598 0.98034 1.17053 0.93364 0.93777 0.87349 0.92778 0.93005 0.86863 0.83173 0.74879 0.81936 0.75188 0.96639 0.99168 0.94664 0.92434 0.95364 0.91776 0.90107 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -6.08 10.70 -148.98 -1.59 -7.67 16 3 C 0.05 0.77 6.04 71.98 0.44 1.21 16 4 C 0.12 1.40 6.77 86.38 0.58 1.99 16 5 N -0.28 -5.22 3.41 -347.96 -1.19 -6.40 16 6 C 0.01 0.21 11.40 83.54 0.95 1.16 16 7 C -0.20 -5.27 10.81 22.41 0.24 -5.03 16 8 C -0.04 -1.21 7.13 42.46 0.30 -0.91 16 9 C 0.60 23.94 7.82 86.75 0.68 24.62 16 10 O -0.58 -27.51 16.61 -3.96 -0.07 -27.57 16 11 N -0.69 -26.01 5.11 -439.90 -2.25 -28.26 16 12 C 0.13 5.65 2.74 46.18 0.13 5.78 16 13 H 0.08 3.46 7.52 -2.39 -0.02 3.44 16 14 C 0.19 10.37 5.14 86.73 0.45 10.81 16 15 N -0.63 -33.99 3.40 -691.55 -2.35 -36.34 16 16 C -0.24 -14.19 10.27 84.03 0.86 -13.33 16 17 H 0.09 4.89 7.84 -2.91 -0.02 4.87 16 18 C -0.07 -4.14 5.48 84.86 0.46 -3.68 16 19 N -0.95 -61.42 10.36 21.65 0.22 -61.20 16 20 Si 0.98 47.50 29.56 68.60 2.03 49.53 16 21 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 22 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 23 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 24 C 0.13 5.52 6.72 86.93 0.58 6.10 16 25 C -0.09 -3.21 3.27 -9.32 -0.03 -3.24 16 26 H 0.09 2.84 8.00 -2.39 -0.02 2.82 16 27 C -0.13 -3.26 9.32 71.98 0.67 -2.59 16 28 N -0.27 -7.46 11.36 -48.17 -0.55 -8.01 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 34 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.15 0.60 8.04 -2.39 -0.02 0.58 16 36 H 0.23 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.41 13.57 8.26 -92.70 -0.77 12.80 16 39 H 0.02 0.94 7.18 -2.39 -0.02 0.93 16 40 H -0.01 -0.64 7.61 -2.39 -0.02 -0.66 16 41 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.03 1.15 7.99 -2.38 -0.02 1.13 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.05 1.44 8.08 -2.39 -0.02 1.42 16 Total: -1.00 -83.97 383.90 2.04 -81.93 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.21 Total: 19.53 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: 7.57 Total: 24.46 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -6.11 Total: -140.20 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.66 Total: -35.25 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -83.97 2.04 -81.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080100601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.226 kcal (2) G-P(sol) polarization free energy of solvation -83.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds