Wall clock time and date at job start Fri Apr 10 2020 18:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47486 * 2 1 4 4 C 1.34667 * 126.58721 * 84.97031 * 3 2 1 5 5 N 1.34128 * 108.01860 * 180.02562 * 4 3 2 6 6 C 1.30490 * 109.25666 * 0.02562 * 5 4 3 7 7 C 1.50703 * 125.65149 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 305.02239 * 7 6 5 9 9 O 1.21284 * 120.00039 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00205 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00080 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.91676 * 37.44772 * 11 10 8 13 13 C 1.54912 * 111.00199 * 273.54221 * 11 10 8 14 14 N 1.47419 * 104.82985 * 204.91508 * 13 11 10 15 15 C 1.36942 * 125.64839 * 204.08990 * 14 13 11 16 16 H 1.07992 * 119.99706 * 6.65716 * 15 14 13 17 17 C 1.38812 * 119.99928 * 186.65061 * 15 14 13 18 18 N 1.31619 * 119.99814 * 7.38075 * 17 15 14 19 19 Si 1.86804 * 119.99683 * 187.38332 * 17 15 14 20 20 H 1.48500 * 109.46845 * 265.01760 * 19 17 15 21 21 H 1.48500 * 109.46905 * 145.01852 * 19 17 15 22 22 H 1.48502 * 109.47029 * 25.01940 * 19 17 15 23 23 C 1.47026 * 108.70506 * 24.36095 * 14 13 11 24 24 C 1.54336 * 107.26214 * 358.57986 * 23 14 13 25 25 H 1.08999 * 110.66600 * 96.52654 * 24 23 14 26 26 O 1.42899 * 110.84998 * 219.67415 * 24 23 14 27 27 C 1.42906 * 114.00109 * 263.69917 * 26 24 23 28 28 N 1.35041 * 108.70301 * 0.25903 * 6 5 4 29 29 H 0.97003 * 126.40229 * 179.74011 * 28 6 5 30 30 H 1.09001 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46912 * 299.99596 * 1 2 3 32 32 H 1.08996 * 109.46815 * 59.99909 * 1 2 3 33 33 H 1.09008 * 109.47404 * 239.99992 * 2 1 3 34 34 H 1.09004 * 109.47301 * 120.00492 * 2 1 3 35 35 H 1.08001 * 125.99385 * 0.05743 * 4 3 2 36 36 H 1.08997 * 109.47633 * 185.02068 * 7 6 5 37 37 H 1.09004 * 109.47188 * 65.02219 * 7 6 5 38 38 H 0.97004 * 120.00067 * 359.97438 * 10 8 7 39 39 H 1.09002 * 110.36476 * 86.08061 * 13 11 10 40 40 H 1.08992 * 110.46051 * 323.80585 * 13 11 10 41 41 H 0.96999 * 119.99355 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.88022 * 118.12904 * 23 14 13 43 43 H 1.08996 * 109.87722 * 239.29473 * 23 14 13 44 44 H 1.09005 * 109.46468 * 300.00062 * 27 26 24 45 45 H 1.08998 * 109.47139 * 59.99268 * 27 26 24 46 46 H 1.08998 * 109.47371 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2106 2.2091 1.0771 5 7 2.6693 3.3955 0.6516 6 6 2.7815 3.3725 -0.6482 7 6 3.2634 4.5121 -1.5087 8 6 2.4316 5.7377 -1.2310 9 8 1.5354 5.6903 -0.4151 10 7 2.6828 6.8862 -1.8900 11 6 1.8745 8.0778 -1.6196 12 1 1.6251 8.1468 -0.5609 13 6 0.5955 8.0911 -2.4935 14 7 0.2259 9.5142 -2.5998 15 6 -1.0300 9.9956 -2.8573 16 1 -1.8704 9.3185 -2.8953 17 6 -1.2228 11.3538 -3.0693 18 7 -0.1856 12.1582 -3.1675 19 14 -2.9541 12.0399 -3.2150 20 1 -3.3346 12.1227 -4.6481 21 1 -3.0018 13.3956 -2.6110 22 1 -3.9022 11.1466 -2.5019 23 6 1.4302 10.3311 -2.3900 24 6 2.5971 9.3619 -2.1055 25 1 3.1639 9.1646 -3.0154 26 8 3.4504 9.8796 -1.0828 27 6 4.5977 10.5726 -1.5786 28 7 2.3885 2.1604 -1.0954 29 1 2.3654 1.8675 -2.0199 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0185 1.9341 2.1037 36 1 3.1686 4.2392 -2.5596 37 1 4.3083 4.7229 -1.2808 38 1 3.3993 6.9240 -2.5428 39 1 -0.2014 7.5274 -2.0083 40 1 0.8041 7.6786 -3.4806 41 1 -0.3204 13.1072 -3.3160 42 1 1.6416 10.9164 -3.2849 43 1 1.2847 10.9936 -1.5369 44 1 5.1976 9.8943 -2.1854 45 1 4.2766 11.4174 -2.1878 46 1 5.1935 10.9348 -0.7409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081808668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:28 Heat of formation + Delta-G solvation = 3.374544 kcal Electronic energy + Delta-G solvation = -27208.504248 eV Core-core repulsion = 23328.141648 eV Total energy + Delta-G solvation = -3880.362600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22076 -39.58310 -38.06357 -35.88050 -34.41693 -33.96866 -32.58754 -31.93389 -31.14934 -28.78201 -27.57719 -26.61561 -26.09482 -24.22233 -23.55011 -21.57239 -21.02164 -20.52642 -20.29316 -19.73312 -17.57582 -17.36558 -16.73283 -16.31762 -15.60307 -15.47208 -14.94902 -14.81522 -14.57442 -14.40072 -14.24803 -14.15927 -13.72814 -13.56048 -13.27058 -13.14720 -12.80493 -12.62700 -12.40361 -12.06763 -11.88288 -11.85860 -11.51650 -11.49239 -11.18425 -11.00917 -10.79592 -10.73975 -10.16869 -10.03096 -9.93888 -9.89156 -9.78541 -9.66417 -9.07552 -8.72776 -8.57558 -8.30562 -6.86092 -5.71986 -3.08332 1.86222 2.78751 2.87077 3.08617 3.40914 3.46841 3.48961 3.52597 4.15154 4.20099 4.52540 4.54175 4.65359 4.79181 4.93284 4.98608 5.14401 5.18699 5.26157 5.32634 5.40783 5.47242 5.48214 5.53275 5.58766 5.66725 5.68108 5.73491 5.87855 5.89510 5.93530 6.08599 6.15460 6.19530 6.56837 6.66723 6.69123 6.89387 7.21979 7.24341 7.53137 7.71109 7.75657 7.82997 8.08958 8.21899 8.48685 9.18074 9.78941 10.42441 11.38276 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.002832 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.327863 B = 9882.917021 C =11414.544815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 C -0.027 4.027 4 C -0.020 4.020 5 N -0.456 5.456 6 C 0.221 3.779 7 C -0.054 4.054 8 C 0.515 3.485 9 O -0.509 6.509 10 N -0.719 5.719 11 C 0.136 3.864 12 H 0.104 0.896 13 C 0.131 3.869 14 N -0.599 5.599 15 C -0.227 4.227 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.160 3.840 24 C 0.057 3.943 25 H 0.064 0.936 26 O -0.378 6.378 27 C 0.034 3.966 28 N -0.563 5.563 29 H 0.415 0.585 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.167 0.833 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.395 0.605 39 H 0.049 0.951 40 H 0.021 0.979 41 H 0.253 0.747 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.033 0.967 45 H 0.045 0.955 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.601 -20.864 0.361 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.169 4.169 5 N -0.174 5.174 6 C -0.043 4.043 7 C -0.096 4.096 8 C 0.299 3.701 9 O -0.383 6.383 10 N -0.370 5.370 11 C 0.031 3.969 12 H 0.122 0.878 13 C 0.003 3.997 14 N -0.327 5.327 15 C -0.356 4.356 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.744 3.256 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.035 3.965 24 C -0.002 4.002 25 H 0.082 0.918 26 O -0.296 6.296 27 C -0.063 4.063 28 N -0.167 5.167 29 H 0.252 0.748 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.184 0.816 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.228 0.772 39 H 0.068 0.932 40 H 0.039 0.961 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.982 -20.024 1.707 22.901 hybrid contribution -0.595 -0.236 -1.734 1.848 sum 10.387 -20.259 -0.027 22.767 Atomic orbital electron populations 1.21789 0.94385 1.01782 1.02752 1.19961 0.96096 0.89096 1.03148 1.21210 1.09129 0.96531 0.87341 1.22110 1.06102 0.90075 0.98637 1.70253 1.17355 1.21657 1.08125 1.22230 1.04391 0.86577 0.91127 1.19937 1.01396 0.89635 0.98654 1.20015 0.84770 0.83879 0.81462 1.90797 1.30996 1.83840 1.32652 1.45870 1.36887 1.10789 1.43489 1.22344 0.91073 0.81719 1.01803 0.87833 1.21812 0.93875 0.88314 0.95652 1.44257 1.05487 0.98869 1.84061 1.19070 0.83307 0.91752 1.41430 0.90248 1.24815 0.97642 0.96194 1.01726 1.69925 1.27672 1.03710 1.55549 0.86077 0.83590 0.78445 0.77537 1.21652 1.21573 1.20522 1.21611 0.82728 0.90969 1.01212 1.23826 0.92724 0.94249 0.89369 0.91812 1.87921 1.35864 1.73385 1.32435 1.22714 0.87908 0.95901 0.99746 1.43068 1.51581 1.12565 1.09488 0.74800 0.92122 0.91906 0.92802 0.91455 0.89543 0.81592 0.87681 0.86417 0.77160 0.93229 0.96115 0.93699 0.91681 0.93548 0.94810 0.93656 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.90 37.16 0.37 -0.67 16 2 C -0.04 -0.29 6.49 -27.88 -0.18 -0.48 16 3 C -0.03 -0.27 6.49 -81.60 -0.53 -0.80 16 4 C -0.02 -0.26 11.79 -17.81 -0.21 -0.47 16 5 N -0.46 -7.17 10.58 -10.82 -0.11 -7.28 16 6 C 0.22 2.80 6.96 -155.42 -1.08 1.72 16 7 C -0.05 -0.55 6.33 -29.03 -0.18 -0.73 16 8 C 0.52 7.77 7.82 -10.98 -0.09 7.68 16 9 O -0.51 -10.38 15.30 5.55 0.08 -10.30 16 10 N -0.72 -10.25 5.23 -51.73 -0.27 -10.52 16 11 C 0.14 2.57 3.04 -65.78 -0.20 2.37 16 12 H 0.10 2.28 7.73 -51.93 -0.40 1.88 16 13 C 0.13 2.84 6.93 -2.53 -0.02 2.83 16 14 N -0.60 -15.62 3.39 -170.07 -0.58 -16.20 16 15 C -0.23 -6.46 10.26 -15.06 -0.15 -6.62 16 16 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 17 C -0.01 -0.21 5.45 -17.43 -0.09 -0.31 16 18 N -0.92 -27.08 10.48 55.49 0.58 -26.50 16 19 Si 0.91 22.40 29.56 -169.99 -5.02 17.37 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.16 3.91 5.21 -3.06 -0.02 3.90 16 24 C 0.06 1.08 3.06 -24.89 -0.08 1.00 16 25 H 0.06 1.04 7.67 -51.93 -0.40 0.64 16 26 O -0.38 -6.95 10.44 -35.23 -0.37 -7.32 16 27 C 0.03 0.48 10.85 101.05 1.10 1.57 16 28 N -0.56 -5.46 6.15 -6.54 -0.04 -5.50 16 29 H 0.41 2.55 8.96 -40.82 -0.37 2.18 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.39 4.15 8.51 -40.82 -0.35 3.80 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.07 1.72 6.99 -51.93 -0.36 1.36 16 43 H 0.05 1.28 7.83 -51.93 -0.41 0.87 16 44 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -37.65 382.60 -8.65 -46.30 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.32 Total: 3.18 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: -1.37 Total: 11.00 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -0.42 Total: -66.00 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.28 Total: -17.62 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.65 -8.65 -46.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081808668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.676 kcal (2) G-P(sol) polarization free energy of solvation -37.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds