Wall clock time and date at job start Fri Apr 10 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47486 * 2 1 4 4 C 1.34667 * 126.58721 * 84.97031 * 3 2 1 5 5 N 1.34128 * 108.01860 * 180.02562 * 4 3 2 6 6 C 1.30490 * 109.25666 * 0.02562 * 5 4 3 7 7 C 1.50703 * 125.65149 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 305.02239 * 7 6 5 9 9 O 1.21284 * 120.00039 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00205 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00080 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.91676 * 37.44772 * 11 10 8 13 13 C 1.54912 * 111.00199 * 273.54221 * 11 10 8 14 14 N 1.47419 * 104.82985 * 204.91508 * 13 11 10 15 15 C 1.36942 * 125.64839 * 204.08990 * 14 13 11 16 16 H 1.07992 * 119.99706 * 6.65716 * 15 14 13 17 17 C 1.38812 * 119.99928 * 186.65061 * 15 14 13 18 18 N 1.31619 * 119.99814 * 7.38075 * 17 15 14 19 19 Si 1.86804 * 119.99683 * 187.38332 * 17 15 14 20 20 H 1.48500 * 109.46845 * 265.01760 * 19 17 15 21 21 H 1.48500 * 109.46905 * 145.01852 * 19 17 15 22 22 H 1.48502 * 109.47029 * 25.01940 * 19 17 15 23 23 C 1.47026 * 108.70506 * 24.36095 * 14 13 11 24 24 C 1.54336 * 107.26214 * 358.57986 * 23 14 13 25 25 H 1.08999 * 110.66600 * 96.52654 * 24 23 14 26 26 O 1.42899 * 110.84998 * 219.67415 * 24 23 14 27 27 C 1.42906 * 114.00109 * 263.69917 * 26 24 23 28 28 N 1.35041 * 108.70301 * 0.25903 * 6 5 4 29 29 H 0.97003 * 126.40229 * 179.74011 * 28 6 5 30 30 H 1.09001 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46912 * 299.99596 * 1 2 3 32 32 H 1.08996 * 109.46815 * 59.99909 * 1 2 3 33 33 H 1.09008 * 109.47404 * 239.99992 * 2 1 3 34 34 H 1.09004 * 109.47301 * 120.00492 * 2 1 3 35 35 H 1.08001 * 125.99385 * 0.05743 * 4 3 2 36 36 H 1.08997 * 109.47633 * 185.02068 * 7 6 5 37 37 H 1.09004 * 109.47188 * 65.02219 * 7 6 5 38 38 H 0.97004 * 120.00067 * 359.97438 * 10 8 7 39 39 H 1.09002 * 110.36476 * 86.08061 * 13 11 10 40 40 H 1.08992 * 110.46051 * 323.80585 * 13 11 10 41 41 H 0.96999 * 119.99355 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.88022 * 118.12904 * 23 14 13 43 43 H 1.08996 * 109.87722 * 239.29473 * 23 14 13 44 44 H 1.09005 * 109.46468 * 300.00062 * 27 26 24 45 45 H 1.08998 * 109.47139 * 59.99268 * 27 26 24 46 46 H 1.08998 * 109.47371 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2106 2.2091 1.0771 5 7 2.6693 3.3955 0.6516 6 6 2.7815 3.3725 -0.6482 7 6 3.2634 4.5121 -1.5087 8 6 2.4316 5.7377 -1.2310 9 8 1.5354 5.6903 -0.4151 10 7 2.6828 6.8862 -1.8900 11 6 1.8745 8.0778 -1.6196 12 1 1.6251 8.1468 -0.5609 13 6 0.5955 8.0911 -2.4935 14 7 0.2259 9.5142 -2.5998 15 6 -1.0300 9.9956 -2.8573 16 1 -1.8704 9.3185 -2.8953 17 6 -1.2228 11.3538 -3.0693 18 7 -0.1856 12.1582 -3.1675 19 14 -2.9541 12.0399 -3.2150 20 1 -3.3346 12.1227 -4.6481 21 1 -3.0018 13.3956 -2.6110 22 1 -3.9022 11.1466 -2.5019 23 6 1.4302 10.3311 -2.3900 24 6 2.5971 9.3619 -2.1055 25 1 3.1639 9.1646 -3.0154 26 8 3.4504 9.8796 -1.0828 27 6 4.5977 10.5726 -1.5786 28 7 2.3885 2.1604 -1.0954 29 1 2.3654 1.8675 -2.0199 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0185 1.9341 2.1037 36 1 3.1686 4.2392 -2.5596 37 1 4.3083 4.7229 -1.2808 38 1 3.3993 6.9240 -2.5428 39 1 -0.2014 7.5274 -2.0083 40 1 0.8041 7.6786 -3.4806 41 1 -0.3204 13.1072 -3.3160 42 1 1.6416 10.9164 -3.2849 43 1 1.2847 10.9936 -1.5369 44 1 5.1976 9.8943 -2.1854 45 1 4.2766 11.4174 -2.1878 46 1 5.1935 10.9348 -0.7409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081808668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:27 Heat of formation + Delta-G solvation = -25.931851 kcal Electronic energy + Delta-G solvation = -27209.775069 eV Core-core repulsion = 23328.141648 eV Total energy + Delta-G solvation = -3881.633421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.06529 -40.95921 -39.54051 -37.49642 -35.57532 -35.06393 -33.80221 -33.37892 -32.18869 -30.49403 -28.99177 -27.82366 -27.46773 -25.99152 -24.26530 -22.85797 -22.20348 -21.88593 -21.67840 -20.92841 -19.15219 -18.40232 -18.14645 -17.72628 -17.20731 -16.49575 -16.43780 -15.96466 -15.79877 -15.68346 -15.39639 -15.12028 -15.06928 -14.78716 -14.47064 -14.42432 -14.05543 -13.94106 -13.59409 -13.49076 -13.20885 -12.98594 -12.82446 -12.77679 -12.59123 -12.45601 -12.29554 -12.10663 -12.02539 -11.87984 -11.60399 -11.00350 -10.91817 -10.79749 -10.76814 -10.53192 -10.06955 -9.15436 -8.96776 -7.88635 -5.28377 1.03106 1.43720 1.46560 1.55908 1.71052 1.87896 2.22004 2.40507 2.48416 2.79625 3.28709 3.37514 3.54083 3.76235 3.92228 3.93667 4.00003 4.09786 4.15952 4.19027 4.39185 4.42249 4.45087 4.48792 4.60103 4.62785 4.67373 4.72983 4.77900 4.82859 4.90138 4.96139 5.02448 5.05182 5.27842 5.35145 5.42439 5.42713 5.48791 5.63606 5.83862 6.13237 6.32844 6.52289 6.65183 7.02900 7.22895 7.36222 7.68307 8.31218 9.19457 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.002832 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.327863 B = 9882.917021 C =11414.544815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.040 4.040 3 C -0.009 4.009 4 C -0.062 4.062 5 N -0.511 5.511 6 C 0.204 3.796 7 C -0.042 4.042 8 C 0.512 3.488 9 O -0.570 6.570 10 N -0.700 5.700 11 C 0.154 3.846 12 H 0.066 0.934 13 C 0.133 3.867 14 N -0.621 5.621 15 C -0.249 4.249 16 H 0.079 0.921 17 C -0.061 4.061 18 N -0.946 5.946 19 Si 0.980 3.020 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.273 1.273 23 C 0.169 3.831 24 C 0.079 3.921 25 H 0.103 0.897 26 O -0.399 6.399 27 C 0.026 3.974 28 N -0.550 5.550 29 H 0.433 0.567 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.170 0.830 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.419 0.581 39 H 0.029 0.971 40 H 0.044 0.956 41 H 0.250 0.750 42 H 0.041 0.959 43 H 0.000 1.000 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.168 -23.241 -1.510 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.126 4.126 4 C -0.210 4.210 5 N -0.230 5.230 6 C -0.061 4.061 7 C -0.083 4.083 8 C 0.299 3.701 9 O -0.447 6.447 10 N -0.354 5.354 11 C 0.047 3.953 12 H 0.084 0.916 13 C 0.006 3.994 14 N -0.349 5.349 15 C -0.377 4.377 16 H 0.097 0.903 17 C -0.254 4.254 18 N -0.594 5.594 19 Si 0.807 3.193 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.198 1.198 23 C 0.043 3.957 24 C 0.020 3.980 25 H 0.120 0.880 26 O -0.318 6.318 27 C -0.070 4.070 28 N -0.155 5.155 29 H 0.274 0.726 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.187 0.813 36 H 0.172 0.828 37 H 0.165 0.835 38 H 0.257 0.743 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.018 0.982 44 H 0.087 0.913 45 H 0.053 0.947 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.604 -22.444 -0.214 25.741 hybrid contribution -1.077 0.470 -1.103 1.612 sum 11.527 -21.974 -1.317 24.848 Atomic orbital electron populations 1.21774 0.94595 1.02758 1.01452 1.20099 0.95682 0.87030 1.05072 1.21678 1.06714 0.97532 0.86634 1.22399 1.08172 0.90421 0.99989 1.70156 1.19161 1.23375 1.10341 1.22600 1.04699 0.88012 0.90788 1.20049 1.01316 0.85985 1.00943 1.20954 0.84214 0.84989 0.79986 1.90788 1.33862 1.84833 1.35234 1.45583 1.36708 1.09136 1.43950 1.21721 0.90701 0.83943 0.98964 0.91611 1.21899 0.94659 0.85922 0.96888 1.44521 1.05439 1.00977 1.83937 1.19411 0.84626 0.92302 1.41392 0.90315 1.25662 1.01509 0.96460 1.01790 1.70128 1.29485 1.03572 1.56215 0.85057 0.79145 0.77305 0.77778 1.20610 1.21824 1.19826 1.21378 0.84573 0.91638 0.98105 1.23474 0.91368 0.92130 0.91010 0.87972 1.87907 1.37156 1.73775 1.32922 1.23007 0.86845 0.96092 1.01079 1.43012 1.50462 1.11682 1.10391 0.72592 0.90009 0.93518 0.93808 0.89014 0.88117 0.81268 0.82782 0.83492 0.74275 0.95304 0.93868 0.94111 0.94123 0.98219 0.91309 0.94665 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.90 71.98 0.71 -1.08 16 2 C -0.04 -0.43 6.49 29.85 0.19 -0.24 16 3 C -0.01 -0.17 6.49 40.95 0.27 0.10 16 4 C -0.06 -1.62 11.79 83.52 0.98 -0.64 16 5 N -0.51 -16.20 10.58 -188.14 -1.99 -18.19 16 6 C 0.20 4.83 6.96 138.13 0.96 5.79 16 7 C -0.04 -0.70 6.33 29.10 0.18 -0.52 16 8 C 0.51 14.69 7.82 87.66 0.69 15.37 16 9 O -0.57 -23.69 15.30 -3.04 -0.05 -23.73 16 10 N -0.70 -18.42 5.23 -435.96 -2.28 -20.70 16 11 C 0.15 5.82 3.04 46.38 0.14 5.96 16 12 H 0.07 3.03 7.73 -2.39 -0.02 3.01 16 13 C 0.13 5.84 6.93 86.86 0.60 6.44 16 14 N -0.62 -33.37 3.39 -691.98 -2.35 -35.72 16 15 C -0.25 -14.53 10.26 84.03 0.86 -13.66 16 16 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 17 C -0.06 -3.53 5.45 84.86 0.46 -3.07 16 18 N -0.95 -57.35 10.48 21.65 0.23 -57.13 16 19 Si 0.98 46.87 29.56 68.60 2.03 48.90 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 23 C 0.17 8.53 5.21 86.73 0.45 8.98 16 24 C 0.08 2.94 3.06 31.79 0.10 3.04 16 25 H 0.10 3.02 7.67 -2.39 -0.02 3.00 16 26 O -0.40 -14.40 10.44 -148.98 -1.55 -15.95 16 27 C 0.03 0.66 10.85 113.37 1.23 1.89 16 28 N -0.55 -9.36 6.15 -174.61 -1.07 -10.44 16 29 H 0.43 3.80 8.96 -92.71 -0.83 2.97 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.04 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 36 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.15 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.42 7.03 8.51 -92.71 -0.79 6.24 16 39 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.04 2.23 6.99 -2.39 -0.02 2.21 16 43 H 0.00 -0.03 7.83 -2.39 -0.02 -0.05 16 44 H 0.07 1.31 8.11 -2.38 -0.02 1.29 16 45 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -89.20 382.60 0.17 -89.03 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -0.62 Total: 15.58 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: 7.83 Total: 28.35 kcal Atomic # 7 Polarization: -134.71 SS G_CDS: -7.47 Total: -142.18 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -1.60 Total: -39.69 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -89.20 0.17 -89.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081808668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.101 kcal (2) G-P(sol) polarization free energy of solvation -89.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds