Wall clock time and date at job start Fri Apr 10 2020 18:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 113.99724 * 2 1 4 4 H 1.09000 * 110.91285 * 26.09717 * 3 2 1 5 5 C 1.55122 * 111.16018 * 262.17394 * 3 2 1 6 6 N 1.47425 * 104.93925 * 205.13262 * 5 3 2 7 7 C 1.36942 * 125.64501 * 203.97005 * 6 5 3 8 8 H 1.08005 * 119.99623 * 169.97961 * 7 6 5 9 9 C 1.38808 * 120.00324 * 349.97232 * 7 6 5 10 10 N 1.31629 * 119.99749 * 350.43061 * 9 7 6 11 11 Si 1.86799 * 120.00256 * 170.42575 * 9 7 6 12 12 H 1.48496 * 109.47114 * 94.14589 * 11 9 7 13 13 H 1.48499 * 109.46962 * 214.14336 * 11 9 7 14 14 H 1.48498 * 109.47097 * 334.14143 * 11 9 7 15 15 C 1.47017 * 108.70839 * 23.99834 * 6 5 3 16 16 C 1.54332 * 107.26663 * 358.94503 * 15 6 5 17 17 H 1.08994 * 110.72157 * 96.34972 * 16 15 6 18 18 N 1.46499 * 110.71689 * 219.44166 * 16 15 6 19 19 C 1.34783 * 120.00240 * 271.15588 * 18 16 15 20 20 O 1.21568 * 119.99534 * 0.02562 * 19 18 16 21 21 C 1.47705 * 119.99806 * 179.97438 * 19 18 16 22 22 C 1.41508 * 126.51744 * 180.29849 * 21 19 18 23 23 C 1.35357 * 105.50546 * 180.13144 * 22 21 19 24 24 N 1.35040 * 107.22852 * 359.60454 * 23 22 21 25 25 C 1.46501 * 124.88154 * 180.29712 * 24 23 22 26 26 C 1.53001 * 109.47001 * 274.99918 * 25 24 23 27 27 C 1.52997 * 109.47432 * 35.00166 * 25 24 23 28 28 N 1.28466 * 110.22793 * 0.26074 * 24 23 22 29 29 H 1.09006 * 109.46439 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47026 * 299.99515 * 1 2 3 31 31 H 1.08994 * 109.47543 * 60.00562 * 1 2 3 32 32 H 1.08995 * 110.42470 * 86.20306 * 5 3 2 33 33 H 1.09000 * 110.20604 * 323.94538 * 5 3 2 34 34 H 0.96993 * 119.99485 * 179.97438 * 10 9 7 35 35 H 1.08995 * 109.88567 * 239.52887 * 15 6 5 36 36 H 1.08997 * 110.01360 * 118.42826 * 15 6 5 37 37 H 0.97006 * 119.99904 * 91.15812 * 18 16 15 38 38 H 1.08006 * 127.24228 * 0.03051 * 22 21 19 39 39 H 1.08003 * 126.38540 * 179.86224 * 23 22 21 40 40 H 1.09002 * 109.46755 * 154.99924 * 25 24 23 41 41 H 1.08996 * 109.47021 * 60.00655 * 26 25 24 42 42 H 1.09005 * 109.46841 * 180.02562 * 26 25 24 43 43 H 1.09005 * 109.47329 * 299.99951 * 26 25 24 44 44 H 1.09002 * 109.46953 * 299.99637 * 27 25 24 45 45 H 1.09003 * 109.47117 * 59.99531 * 27 25 24 46 46 H 1.08996 * 109.47093 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3331 2.0329 0.4479 5 6 2.4179 1.7370 -1.4332 6 7 3.4965 2.7234 -1.2407 7 6 3.8523 3.7009 -2.1314 8 1 4.5444 4.4753 -1.8352 9 6 3.3234 3.6964 -3.4148 10 7 2.6331 2.6588 -3.8385 11 14 3.5913 5.1627 -4.5406 12 1 4.7828 4.9211 -5.3932 13 1 2.3962 5.3503 -5.4019 14 1 3.8076 6.3825 -3.7217 15 6 4.1274 2.4835 0.0653 16 6 3.3823 1.3034 0.7242 17 1 3.9105 0.3667 0.5470 18 7 3.2108 1.5359 2.1604 19 6 4.1627 1.1353 3.0264 20 8 5.1639 0.5815 2.6156 21 6 3.9899 1.3702 4.4744 22 6 4.8983 1.0147 5.4994 23 6 4.3194 1.4218 6.6532 24 7 3.1400 1.9939 6.3288 25 6 2.1985 2.5750 7.2890 26 6 1.2948 1.4738 7.8474 27 6 2.9754 3.2269 8.4346 28 7 2.9629 1.9560 5.0570 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.5728 2.1945 -1.9475 33 1 2.7852 0.8781 -1.9947 34 1 2.2633 2.6558 -4.7351 35 1 4.0382 3.3729 0.6891 36 1 5.1787 2.2292 -0.0693 37 1 2.4120 1.9781 2.4881 38 1 5.8521 0.5208 5.3853 39 1 4.7269 1.3134 7.6476 40 1 1.5882 3.3275 6.7895 41 1 1.9051 0.7215 8.3469 42 1 0.5940 1.9063 8.5615 43 1 0.7412 1.0094 7.0313 44 1 3.5857 2.4745 8.9341 45 1 3.6192 4.0114 8.0368 46 1 2.2749 3.6596 9.1487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082194140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:54 Heat of formation + Delta-G solvation = 31.337712 kcal Electronic energy + Delta-G solvation = -27498.499563 eV Core-core repulsion = 23619.349536 eV Total energy + Delta-G solvation = -3879.150026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.79749 -39.43549 -37.94419 -36.16731 -35.82991 -33.94694 -31.80822 -31.04204 -30.45554 -28.70209 -27.89762 -27.13644 -26.04386 -24.71566 -23.72874 -22.57100 -20.71451 -20.43113 -20.22120 -19.57514 -17.98805 -17.14165 -16.65479 -16.34320 -16.13453 -15.43607 -15.03272 -14.81221 -14.43960 -14.38754 -14.20287 -13.94046 -13.83517 -13.44761 -13.32219 -13.09234 -12.89741 -12.76893 -12.62647 -12.15588 -11.96289 -11.89921 -11.70587 -11.42434 -11.19058 -10.99181 -10.93097 -10.80152 -10.75914 -10.14944 -9.99010 -9.83132 -9.78130 -9.35545 -9.16263 -9.04634 -8.59194 -8.55891 -6.80823 -5.73259 -3.07422 1.60115 2.08958 2.20675 3.39492 3.42579 3.47209 3.49728 3.62525 3.94810 4.15953 4.27597 4.47119 4.52569 4.56579 4.60946 4.89483 4.98922 5.08379 5.19283 5.24381 5.31405 5.43465 5.45607 5.53475 5.56955 5.61354 5.65105 5.69392 5.72399 5.75729 5.86771 5.95946 6.13721 6.25156 6.32484 6.56654 6.63332 6.78244 6.97573 7.30735 7.48679 7.67456 7.75339 7.83886 7.95190 8.23889 8.49615 9.18547 9.80055 10.45925 11.39305 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.002856 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.095844 B = 9802.836765 C =10283.181952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.053 3.947 4 H 0.067 0.933 5 C 0.164 3.836 6 N -0.599 5.599 7 C -0.229 4.229 8 H 0.079 0.921 9 C -0.007 4.007 10 N -0.918 5.918 11 Si 0.912 3.088 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.130 3.870 16 C 0.136 3.864 17 H 0.105 0.895 18 N -0.702 5.702 19 C 0.603 3.397 20 O -0.532 6.532 21 C -0.011 4.011 22 C -0.179 4.179 23 C -0.022 4.022 24 N -0.279 5.279 25 C 0.141 3.859 26 C -0.165 4.165 27 C -0.165 4.165 28 N -0.262 5.262 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.254 0.746 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.402 0.598 38 H 0.162 0.838 39 H 0.178 0.822 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 -1.880 26.220 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.006 4.006 4 H 0.085 0.915 5 C 0.038 3.962 6 N -0.327 5.327 7 C -0.357 4.357 8 H 0.096 0.904 9 C -0.204 4.204 10 N -0.564 5.564 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.032 3.968 17 H 0.123 0.877 18 N -0.353 5.353 19 C 0.387 3.613 20 O -0.406 6.406 21 C -0.171 4.171 22 C -0.207 4.207 23 C -0.164 4.164 24 N -0.068 5.068 25 C 0.040 3.960 26 C -0.223 4.223 27 C -0.223 4.223 28 N -0.097 5.097 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.237 0.763 38 H 0.179 0.821 39 H 0.195 0.805 40 H 0.128 0.872 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.152 -1.845 25.547 26.127 hybrid contribution 0.286 0.778 -0.207 0.854 sum -4.866 -1.067 25.341 25.826 Atomic orbital electron populations 1.22704 0.81714 1.01970 0.99785 1.87867 1.19109 1.27619 1.95034 1.24030 0.92794 0.83862 0.99921 0.91507 1.21769 0.92697 0.92707 0.89037 1.44282 1.36104 1.36268 1.16031 1.19037 1.23927 1.01561 0.91156 0.90357 1.24851 1.00966 0.97897 0.96636 1.69955 1.40356 1.28288 1.17843 0.86099 0.77196 0.81917 0.80527 1.21522 1.21633 1.20581 1.21625 0.95920 0.93971 0.88180 1.22180 0.96604 1.00437 0.77615 0.87742 1.45850 1.22342 1.60175 1.06887 1.16882 0.83137 0.78398 0.82924 1.90798 1.28877 1.42852 1.78095 1.22038 0.94088 1.05802 0.95189 1.21786 1.02150 1.06595 0.90131 1.22714 0.89131 1.03639 1.00912 1.45725 1.15391 1.41456 1.04227 1.21579 0.89758 0.96417 0.88212 1.22231 0.99668 0.98339 1.02087 1.22196 1.01329 1.01520 0.97209 1.73498 1.24729 1.19603 0.91912 0.90267 0.94798 0.93688 0.90737 0.94082 0.93622 0.95209 0.94653 0.76308 0.82087 0.80484 0.87230 0.91598 0.90053 0.91275 0.91218 0.91171 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.85 101.05 1.10 1.61 16 2 O -0.38 -7.21 10.52 -35.23 -0.37 -7.59 16 3 C 0.05 1.07 3.17 -24.47 -0.08 0.99 16 4 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 5 C 0.16 4.08 5.17 -2.41 -0.01 4.07 16 6 N -0.60 -15.84 3.40 -169.94 -0.58 -16.42 16 7 C -0.23 -6.51 10.24 -15.06 -0.15 -6.66 16 8 H 0.08 2.16 7.85 -52.48 -0.41 1.75 16 9 C -0.01 -0.19 5.40 -17.43 -0.09 -0.29 16 10 N -0.92 -27.18 10.68 55.49 0.59 -26.59 16 11 Si 0.91 22.26 29.56 -169.99 -5.03 17.23 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.13 2.97 7.00 -3.06 -0.02 2.95 16 16 C 0.14 2.75 3.00 -66.10 -0.20 2.55 16 17 H 0.10 2.29 7.62 -51.93 -0.40 1.89 16 18 N -0.70 -12.18 5.11 -53.02 -0.27 -12.45 16 19 C 0.60 10.80 7.82 -12.39 -0.10 10.70 16 20 O -0.53 -11.14 16.61 5.31 0.09 -11.05 16 21 C -0.01 -0.16 7.13 -82.77 -0.59 -0.75 16 22 C -0.18 -2.22 10.81 -39.36 -0.43 -2.65 16 23 C -0.02 -0.20 10.54 -17.17 -0.18 -0.38 16 24 N -0.28 -2.76 3.22 -54.83 -0.18 -2.94 16 25 C 0.14 0.85 3.80 -67.93 -0.26 0.60 16 26 C -0.17 -0.81 9.52 37.16 0.35 -0.45 16 27 C -0.16 -0.60 8.80 37.16 0.33 -0.27 16 28 N -0.26 -3.47 11.67 33.42 0.39 -3.08 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 2.00 6.93 -51.93 -0.36 1.64 16 33 H 0.04 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 6.21 8.26 -40.82 -0.34 5.87 16 38 H 0.16 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.18 0.94 7.16 -52.48 -0.38 0.56 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.20 7.06 -51.93 -0.37 -0.17 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -34.93 381.78 -7.20 -42.13 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.27 Total: 2.99 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -0.33 Total: 12.02 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.04 Total: -61.47 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.28 Total: -18.64 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.93 -7.20 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082194140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.463 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds