Wall clock time and date at job start Fri Apr 10 2020 18:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 113.99724 * 2 1 4 4 H 1.09000 * 110.91285 * 26.09717 * 3 2 1 5 5 C 1.55122 * 111.16018 * 262.17394 * 3 2 1 6 6 N 1.47425 * 104.93925 * 205.13262 * 5 3 2 7 7 C 1.36942 * 125.64501 * 203.97005 * 6 5 3 8 8 H 1.08005 * 119.99623 * 169.97961 * 7 6 5 9 9 C 1.38808 * 120.00324 * 349.97232 * 7 6 5 10 10 N 1.31629 * 119.99749 * 350.43061 * 9 7 6 11 11 Si 1.86799 * 120.00256 * 170.42575 * 9 7 6 12 12 H 1.48496 * 109.47114 * 94.14589 * 11 9 7 13 13 H 1.48499 * 109.46962 * 214.14336 * 11 9 7 14 14 H 1.48498 * 109.47097 * 334.14143 * 11 9 7 15 15 C 1.47017 * 108.70839 * 23.99834 * 6 5 3 16 16 C 1.54332 * 107.26663 * 358.94503 * 15 6 5 17 17 H 1.08994 * 110.72157 * 96.34972 * 16 15 6 18 18 N 1.46499 * 110.71689 * 219.44166 * 16 15 6 19 19 C 1.34783 * 120.00240 * 271.15588 * 18 16 15 20 20 O 1.21568 * 119.99534 * 0.02562 * 19 18 16 21 21 C 1.47705 * 119.99806 * 179.97438 * 19 18 16 22 22 C 1.41508 * 126.51744 * 180.29849 * 21 19 18 23 23 C 1.35357 * 105.50546 * 180.13144 * 22 21 19 24 24 N 1.35040 * 107.22852 * 359.60454 * 23 22 21 25 25 C 1.46501 * 124.88154 * 180.29712 * 24 23 22 26 26 C 1.53001 * 109.47001 * 274.99918 * 25 24 23 27 27 C 1.52997 * 109.47432 * 35.00166 * 25 24 23 28 28 N 1.28466 * 110.22793 * 0.26074 * 24 23 22 29 29 H 1.09006 * 109.46439 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47026 * 299.99515 * 1 2 3 31 31 H 1.08994 * 109.47543 * 60.00562 * 1 2 3 32 32 H 1.08995 * 110.42470 * 86.20306 * 5 3 2 33 33 H 1.09000 * 110.20604 * 323.94538 * 5 3 2 34 34 H 0.96993 * 119.99485 * 179.97438 * 10 9 7 35 35 H 1.08995 * 109.88567 * 239.52887 * 15 6 5 36 36 H 1.08997 * 110.01360 * 118.42826 * 15 6 5 37 37 H 0.97006 * 119.99904 * 91.15812 * 18 16 15 38 38 H 1.08006 * 127.24228 * 0.03051 * 22 21 19 39 39 H 1.08003 * 126.38540 * 179.86224 * 23 22 21 40 40 H 1.09002 * 109.46755 * 154.99924 * 25 24 23 41 41 H 1.08996 * 109.47021 * 60.00655 * 26 25 24 42 42 H 1.09005 * 109.46841 * 180.02562 * 26 25 24 43 43 H 1.09005 * 109.47329 * 299.99951 * 26 25 24 44 44 H 1.09002 * 109.46953 * 299.99637 * 27 25 24 45 45 H 1.09003 * 109.47117 * 59.99531 * 27 25 24 46 46 H 1.08996 * 109.47093 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3331 2.0329 0.4479 5 6 2.4179 1.7370 -1.4332 6 7 3.4965 2.7234 -1.2407 7 6 3.8523 3.7009 -2.1314 8 1 4.5444 4.4753 -1.8352 9 6 3.3234 3.6964 -3.4148 10 7 2.6331 2.6588 -3.8385 11 14 3.5913 5.1627 -4.5406 12 1 4.7828 4.9211 -5.3932 13 1 2.3962 5.3503 -5.4019 14 1 3.8076 6.3825 -3.7217 15 6 4.1274 2.4835 0.0653 16 6 3.3823 1.3034 0.7242 17 1 3.9105 0.3667 0.5470 18 7 3.2108 1.5359 2.1604 19 6 4.1627 1.1353 3.0264 20 8 5.1639 0.5815 2.6156 21 6 3.9899 1.3702 4.4744 22 6 4.8983 1.0147 5.4994 23 6 4.3194 1.4218 6.6532 24 7 3.1400 1.9939 6.3288 25 6 2.1985 2.5750 7.2890 26 6 1.2948 1.4738 7.8474 27 6 2.9754 3.2269 8.4346 28 7 2.9629 1.9560 5.0570 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.5728 2.1945 -1.9475 33 1 2.7852 0.8781 -1.9947 34 1 2.2633 2.6558 -4.7351 35 1 4.0382 3.3729 0.6891 36 1 5.1787 2.2292 -0.0693 37 1 2.4120 1.9781 2.4881 38 1 5.8521 0.5208 5.3853 39 1 4.7269 1.3134 7.6476 40 1 1.5882 3.3275 6.7895 41 1 1.9051 0.7215 8.3469 42 1 0.5940 1.9063 8.5615 43 1 0.7412 1.0094 7.0313 44 1 3.5857 2.4745 8.9341 45 1 3.6192 4.0114 8.0368 46 1 2.2749 3.6596 9.1487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082194140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:53 Heat of formation + Delta-G solvation = 5.794492 kcal Electronic energy + Delta-G solvation = -27499.607200 eV Core-core repulsion = 23619.349536 eV Total energy + Delta-G solvation = -3880.257663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.67386 -40.98149 -39.52591 -37.55403 -36.71132 -35.65762 -33.74375 -31.88687 -31.51367 -30.44409 -28.91857 -28.19358 -27.52940 -26.34962 -24.97286 -23.50687 -22.47114 -21.87590 -21.39888 -20.79438 -19.24194 -18.66651 -18.05140 -17.67342 -17.22197 -16.99332 -16.57399 -16.00562 -15.80761 -15.73156 -15.50009 -15.25366 -15.00643 -14.75606 -14.58193 -14.10779 -13.94426 -13.84091 -13.79359 -13.24211 -13.13261 -13.05046 -13.01639 -12.74043 -12.63819 -12.38718 -12.33385 -12.12941 -12.07220 -11.91350 -11.88964 -11.69574 -11.35827 -10.77788 -10.62431 -10.31518 -10.13794 -9.97493 -8.96033 -7.91209 -5.29935 0.51493 1.21255 1.46403 1.48089 1.49055 1.58499 2.03367 2.34191 2.44809 2.70384 3.27043 3.30000 3.53340 3.68274 3.81834 3.89380 3.91375 3.94359 3.99964 4.08338 4.23719 4.33285 4.42093 4.56876 4.61747 4.66215 4.68023 4.76617 4.78179 4.82726 4.84112 4.84264 4.90019 4.91435 5.19858 5.25028 5.25607 5.32015 5.38525 5.42642 5.58918 5.92701 6.10008 6.25890 6.38864 6.91306 7.00756 7.12800 7.65802 8.31638 9.20052 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.002856 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.095844 B = 9802.836765 C =10283.181952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.078 3.922 4 H 0.090 0.910 5 C 0.172 3.828 6 N -0.616 5.616 7 C -0.251 4.251 8 H 0.082 0.918 9 C -0.059 4.059 10 N -0.947 5.947 11 Si 0.984 3.016 12 H -0.287 1.287 13 H -0.289 1.289 14 H -0.267 1.267 15 C 0.132 3.868 16 C 0.152 3.848 17 H 0.084 0.916 18 N -0.692 5.692 19 C 0.602 3.398 20 O -0.571 6.571 21 C -0.044 4.044 22 C -0.202 4.202 23 C 0.003 3.997 24 N -0.268 5.268 25 C 0.130 3.870 26 C -0.160 4.160 27 C -0.160 4.160 28 N -0.274 5.274 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.002 0.998 34 H 0.251 0.749 35 H 0.040 0.960 36 H 0.017 0.983 37 H 0.414 0.586 38 H 0.162 0.838 39 H 0.224 0.776 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.898 -0.812 29.604 30.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C 0.018 3.982 4 H 0.108 0.892 5 C 0.046 3.954 6 N -0.344 5.344 7 C -0.379 4.379 8 H 0.099 0.901 9 C -0.253 4.253 10 N -0.594 5.594 11 Si 0.811 3.189 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.191 1.191 15 C 0.006 3.994 16 C 0.046 3.954 17 H 0.102 0.898 18 N -0.343 5.343 19 C 0.388 3.612 20 O -0.449 6.449 21 C -0.203 4.203 22 C -0.230 4.230 23 C -0.140 4.140 24 N -0.058 5.058 25 C 0.031 3.969 26 C -0.218 4.218 27 C -0.217 4.217 28 N -0.111 5.111 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.020 0.980 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.251 0.749 38 H 0.180 0.820 39 H 0.240 0.760 40 H 0.126 0.874 41 H 0.090 0.910 42 H 0.125 0.875 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.079 0.921 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.252 -0.767 28.973 29.650 hybrid contribution 0.569 0.424 -1.133 1.337 sum -5.683 -0.343 27.840 28.416 Atomic orbital electron populations 1.23005 0.79198 1.04052 1.00701 1.87855 1.21864 1.26689 1.94918 1.23607 0.93154 0.85047 0.96395 0.89193 1.21519 0.91352 0.90808 0.91699 1.44540 1.36937 1.36105 1.16842 1.19419 1.24216 1.02269 0.92012 0.90052 1.25742 1.00824 1.00656 0.98083 1.70159 1.41162 1.30106 1.18003 0.85001 0.76834 0.78790 0.78258 1.21386 1.21463 1.19150 1.21658 0.95138 0.95403 0.87227 1.21716 0.96142 0.98225 0.79315 0.89838 1.45636 1.22923 1.60313 1.05420 1.17325 0.82274 0.77288 0.84305 1.90764 1.30363 1.44607 1.79138 1.21669 0.96137 1.08682 0.93770 1.21991 1.02474 1.07817 0.90690 1.23284 0.87970 1.00949 1.01762 1.46253 1.15992 1.39959 1.03629 1.22032 0.89787 0.96874 0.88174 1.22221 0.99731 0.98039 1.01829 1.22220 1.01629 1.01456 0.96430 1.73425 1.24326 1.19710 0.93654 0.87731 0.92284 0.94279 0.93076 0.97966 0.93947 0.94206 0.96445 0.74938 0.82020 0.75969 0.87396 0.91001 0.87474 0.93351 0.89783 0.92124 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.85 113.37 1.23 1.97 16 2 O -0.39 -15.07 10.52 -148.98 -1.57 -16.63 16 3 C 0.08 3.15 3.17 32.06 0.10 3.25 16 4 H 0.09 3.24 7.69 -2.39 -0.02 3.22 16 5 C 0.17 8.97 5.17 86.93 0.45 9.42 16 6 N -0.62 -33.79 3.40 -691.57 -2.35 -36.14 16 7 C -0.25 -14.62 10.24 84.03 0.86 -13.76 16 8 H 0.08 4.57 7.85 -2.91 -0.02 4.54 16 9 C -0.06 -3.44 5.40 84.86 0.46 -2.98 16 10 N -0.95 -57.84 10.68 21.65 0.23 -57.61 16 11 Si 0.98 46.32 29.56 68.60 2.03 48.35 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 C 0.13 6.27 7.00 86.73 0.61 6.87 16 16 C 0.15 6.32 3.00 46.18 0.14 6.46 16 17 H 0.08 3.86 7.62 -2.39 -0.02 3.84 16 18 N -0.69 -24.27 5.11 -439.92 -2.25 -26.52 16 19 C 0.60 22.11 7.82 86.74 0.68 22.79 16 20 O -0.57 -25.00 16.61 -3.93 -0.07 -25.06 16 21 C -0.04 -1.33 7.13 42.46 0.30 -1.03 16 22 C -0.20 -4.82 10.81 22.41 0.24 -4.58 16 23 C 0.00 0.05 10.54 83.53 0.88 0.93 16 24 N -0.27 -4.66 3.22 -327.38 -1.05 -5.72 16 25 C 0.13 1.17 3.80 44.99 0.17 1.34 16 26 C -0.16 -1.04 9.52 71.98 0.69 -0.36 16 27 C -0.16 -0.51 8.80 71.98 0.63 0.12 16 28 N -0.27 -6.94 11.67 -48.18 -0.56 -7.50 16 29 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 2.87 6.93 -2.39 -0.02 2.85 16 33 H 0.00 0.14 8.07 -2.39 -0.02 0.12 16 34 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.04 1.81 8.03 -2.39 -0.02 1.79 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.41 12.55 8.26 -92.70 -0.77 11.79 16 38 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 39 H 0.22 1.25 7.16 -2.91 -0.02 1.23 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.11 0.17 8.14 -2.38 -0.02 0.15 16 43 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.08 0.06 7.06 -2.39 -0.02 0.04 16 45 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: -1.00 -79.90 381.78 2.07 -77.83 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.21 Total: 18.55 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: 7.44 Total: 30.45 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -5.98 Total: -133.50 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -1.63 Total: -41.70 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -79.90 2.07 -77.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082194140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.629 kcal (2) G-P(sol) polarization free energy of solvation -79.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds