Wall clock time and date at job start Fri Apr 10 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.08995 * 110.89015 * 29.29674 * 3 2 1 5 5 C 1.54912 * 111.00425 * 265.41531 * 3 2 1 6 6 N 1.47464 * 104.81279 * 204.95044 * 5 3 2 7 7 C 1.36932 * 125.62861 * 204.06915 * 6 5 3 8 8 H 1.08003 * 119.99911 * 179.97438 * 7 6 5 9 9 C 1.38806 * 120.00286 * 0.02562 * 7 6 5 10 10 N 1.31620 * 119.99790 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00329 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47344 * 59.99144 * 11 9 7 13 13 H 1.48496 * 109.47289 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47015 * 299.99534 * 11 9 7 15 15 C 1.47025 * 108.72015 * 24.06889 * 6 5 3 16 16 C 1.54322 * 107.27221 * 358.97684 * 15 6 5 17 17 H 1.08999 * 110.87113 * 96.24658 * 16 15 6 18 18 N 1.46509 * 110.71793 * 219.44238 * 16 15 6 19 19 C 1.34779 * 120.00081 * 268.52464 * 18 16 15 20 20 O 1.21284 * 119.99530 * 359.97438 * 19 18 16 21 21 C 1.50695 * 119.99864 * 180.02562 * 19 18 16 22 22 H 1.08999 * 109.47319 * 299.99901 * 21 19 18 23 23 C 1.52997 * 109.47249 * 59.99872 * 21 19 18 24 24 C 1.50699 * 109.46805 * 179.97438 * 21 19 18 25 25 C 1.39872 * 126.04399 * 300.02236 * 24 21 19 26 26 N 1.30837 * 108.20513 * 179.97438 * 25 24 21 27 27 N 1.40084 * 108.20545 * 0.02562 * 26 25 24 28 28 C 1.46504 * 126.04043 * 180.02562 * 27 26 25 29 29 C 1.34952 * 107.92368 * 359.75353 * 27 26 25 30 30 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 31 31 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 33 33 H 1.09001 * 110.36386 * 323.75517 * 5 3 2 34 34 H 1.09002 * 110.36619 * 86.07514 * 5 3 2 35 35 H 0.97003 * 119.99743 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.88022 * 239.55585 * 15 6 5 37 37 H 1.09000 * 110.00818 * 118.46769 * 15 6 5 38 38 H 0.96999 * 119.99590 * 88.52242 * 18 16 15 39 39 H 1.09007 * 109.47278 * 59.99902 * 23 21 19 40 40 H 1.09003 * 109.47386 * 180.02562 * 23 21 19 41 41 H 1.09004 * 109.47357 * 300.00073 * 23 21 19 42 42 H 1.08004 * 125.89482 * 0.02562 * 25 24 21 43 43 H 1.08996 * 109.46894 * 90.02084 * 28 27 26 44 44 H 1.08995 * 109.47254 * 210.02457 * 28 27 26 45 45 H 1.08999 * 109.46557 * 330.02021 * 28 27 26 46 46 H 1.08007 * 126.12428 * 180.24084 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3570 2.0217 0.4983 5 6 2.3417 1.7657 -1.4416 6 7 3.4270 2.7513 -1.2825 7 6 3.7340 3.7495 -2.1681 8 1 4.5515 4.4239 -1.9595 9 6 2.9942 3.8954 -3.3334 10 7 1.9977 3.0739 -3.5874 11 14 3.4135 5.2567 -4.5419 12 1 4.8078 5.0805 -5.0218 13 1 2.4819 5.1978 -5.6967 14 1 3.2847 6.5738 -3.8681 15 6 4.1245 2.4849 -0.0160 16 6 3.4173 1.2877 0.6536 17 1 3.9353 0.3554 0.4288 18 7 3.3188 1.4876 2.1016 19 6 4.2898 1.0245 2.9134 20 8 5.2449 0.4418 2.4452 21 6 4.1882 1.2296 4.4029 22 1 4.1495 2.2969 4.6209 23 6 2.9175 0.5561 4.9249 24 6 5.3913 0.6220 5.0768 25 6 5.7715 -0.7231 5.0258 26 7 6.8643 -0.8661 5.7309 27 7 7.2144 0.3852 6.2542 28 6 8.3743 0.6710 7.1022 29 6 6.2977 1.2822 5.8342 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 2.6817 0.9209 -2.0407 34 1 1.4698 2.2312 -1.9010 35 1 1.4809 3.1756 -4.4020 36 1 4.0650 3.3599 0.6312 37 1 5.1682 2.2377 -0.2099 38 1 2.5547 1.9533 2.4760 39 1 2.9561 -0.5112 4.7070 40 1 2.8437 0.7049 6.0022 41 1 2.0470 0.9952 4.4375 42 1 5.2529 -1.5080 4.4952 43 1 9.2264 0.9343 6.4756 44 1 8.1419 1.5024 7.7676 45 1 8.6175 -0.2112 7.6944 46 1 6.2881 2.3376 6.0634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082404518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:11 Heat of formation + Delta-G solvation = 33.494410 kcal Electronic energy + Delta-G solvation = -27664.839342 eV Core-core repulsion = 23785.782837 eV Total energy + Delta-G solvation = -3879.056505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35686 -39.60622 -38.06129 -35.89153 -34.45241 -33.98146 -32.70198 -31.61785 -29.57991 -28.71514 -27.09388 -26.62226 -26.07191 -24.70780 -23.76921 -21.34146 -21.08567 -20.58894 -19.97708 -19.49020 -17.46132 -16.84283 -16.61986 -16.23281 -15.51427 -15.47439 -14.96535 -14.94611 -14.42017 -14.29508 -14.22610 -13.86420 -13.75223 -13.19783 -13.08901 -13.02130 -12.80397 -12.67962 -12.34017 -12.16452 -11.93901 -11.71859 -11.62486 -11.35613 -11.26218 -11.00609 -10.80742 -10.75665 -10.55955 -10.21362 -9.87845 -9.79414 -9.57167 -9.39154 -9.03231 -8.69423 -8.58880 -8.42751 -6.88923 -5.68762 -3.11756 1.81785 2.44014 2.73895 2.93795 3.39279 3.43711 3.44773 3.52591 4.15680 4.34441 4.50044 4.67522 4.76263 4.88394 4.91992 5.05978 5.13764 5.17360 5.26120 5.36419 5.44189 5.52950 5.58704 5.61612 5.64564 5.71459 5.72705 5.80296 5.87726 5.94259 5.97784 6.11431 6.13870 6.25743 6.54324 6.61176 6.71497 6.90549 6.96129 7.28150 7.56221 7.65814 7.73515 7.78481 7.84680 8.27852 8.54628 9.16835 9.77285 10.40157 11.34895 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.002967 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.686556 B = 9434.812040 C =10647.746716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.055 3.945 4 H 0.066 0.934 5 C 0.141 3.859 6 N -0.601 5.601 7 C -0.223 4.223 8 H 0.079 0.921 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.137 3.863 17 H 0.102 0.898 18 N -0.717 5.717 19 C 0.516 3.484 20 O -0.530 6.530 21 C -0.030 4.030 22 H 0.099 0.901 23 C -0.137 4.137 24 C -0.213 4.213 25 C 0.083 3.917 26 N -0.303 5.303 27 N -0.382 5.382 28 C 0.104 3.896 29 C 0.058 3.942 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.026 0.974 34 H 0.112 0.888 35 H 0.254 0.746 36 H 0.029 0.971 37 H 0.032 0.968 38 H 0.396 0.604 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.179 0.821 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 -3.018 21.869 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.015 3.985 6 N -0.328 5.328 7 C -0.351 4.351 8 H 0.097 0.903 9 C -0.206 4.206 10 N -0.572 5.572 11 Si 0.747 3.253 12 H -0.211 1.211 13 H -0.215 1.215 14 H -0.211 1.211 15 C 0.004 3.996 16 C 0.032 3.968 17 H 0.120 0.880 18 N -0.367 5.367 19 C 0.301 3.699 20 O -0.406 6.406 21 C -0.053 4.053 22 H 0.117 0.883 23 C -0.195 4.195 24 C -0.225 4.225 25 C -0.104 4.104 26 N -0.124 5.124 27 N -0.164 5.164 28 C -0.037 4.037 29 C -0.088 4.088 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.129 0.871 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.230 0.770 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.196 0.804 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.737 -4.327 21.840 22.433 hybrid contribution -0.863 1.802 -0.836 2.165 sum 1.873 -2.526 21.005 21.239 Atomic orbital electron populations 1.22695 0.81689 1.01867 0.99912 1.87852 1.19135 1.27749 1.95099 1.24028 0.92501 0.83705 1.00256 0.91634 1.22315 0.94932 0.91945 0.89312 1.44306 1.34626 1.34348 1.19561 1.19047 1.12530 1.05201 0.98300 0.90298 1.24799 0.98299 0.99353 0.98129 1.69750 1.22251 1.38699 1.26490 0.86113 0.77524 0.81168 0.80457 1.21126 1.21538 1.21137 1.21598 0.95508 0.93921 0.88601 1.22109 0.96429 1.00172 0.78080 0.87973 1.46003 1.24436 1.59162 1.07149 1.20532 0.82366 0.78522 0.88468 1.90713 1.31677 1.41157 1.77035 1.19520 0.93630 1.01100 0.91023 0.88300 1.21748 0.94996 1.01333 1.01435 1.19445 1.01025 0.94070 1.07975 1.23621 0.93441 0.96796 0.96497 1.77357 1.16627 1.01635 1.16808 1.48366 1.21636 1.05953 1.40397 1.21799 0.85688 1.02745 0.93495 1.22221 0.90978 0.96262 0.99315 0.94837 0.90374 0.93543 0.95614 0.87078 0.93567 0.95325 0.95024 0.77049 0.91908 0.91620 0.91947 0.80443 0.90895 0.89676 0.89468 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.87 101.05 1.10 1.60 16 2 O -0.38 -6.93 10.51 -35.23 -0.37 -7.30 16 3 C 0.05 1.04 3.14 -24.58 -0.08 0.96 16 4 H 0.07 1.15 7.73 -51.93 -0.40 0.75 16 5 C 0.14 3.43 5.62 -2.51 -0.01 3.41 16 6 N -0.60 -15.48 3.40 -170.04 -0.58 -16.06 16 7 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 10 N -0.92 -26.60 10.09 55.49 0.56 -26.04 16 11 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 C 0.13 2.86 6.99 -3.06 -0.02 2.84 16 16 C 0.14 2.59 3.06 -66.09 -0.20 2.38 16 17 H 0.10 2.16 7.55 -51.93 -0.39 1.77 16 18 N -0.72 -10.50 5.00 -52.03 -0.26 -10.76 16 19 C 0.52 7.70 7.11 -10.99 -0.08 7.62 16 20 O -0.53 -10.25 15.02 5.55 0.08 -10.17 16 21 C -0.03 -0.32 3.09 -92.93 -0.29 -0.61 16 22 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 23 C -0.14 -1.17 8.98 37.16 0.33 -0.84 16 24 C -0.21 -2.58 4.36 -105.05 -0.46 -3.03 16 25 C 0.08 1.13 10.77 -17.36 -0.19 0.94 16 26 N -0.30 -4.28 12.58 30.63 0.39 -3.89 16 27 N -0.38 -4.26 4.01 -68.16 -0.27 -4.53 16 28 C 0.10 0.67 11.47 59.85 0.69 1.36 16 29 C 0.06 0.61 11.38 -17.22 -0.20 0.41 16 30 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 2.97 5.88 -51.93 -0.31 2.66 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 36 H 0.03 0.60 8.03 -51.93 -0.42 0.19 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.40 4.63 7.98 -40.82 -0.33 4.30 16 39 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 42 H 0.18 2.28 8.06 -52.48 -0.42 1.86 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -35.57 380.43 -6.66 -42.23 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.27 Total: 3.55 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 0.35 Total: 10.31 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.17 Total: -61.28 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.29 Total: -17.47 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.57 -6.66 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082404518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.728 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds