Wall clock time and date at job start Fri Apr 10 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.08995 * 110.89015 * 29.29674 * 3 2 1 5 5 C 1.54912 * 111.00425 * 265.41531 * 3 2 1 6 6 N 1.47464 * 104.81279 * 204.95044 * 5 3 2 7 7 C 1.36932 * 125.62861 * 204.06915 * 6 5 3 8 8 H 1.08003 * 119.99911 * 179.97438 * 7 6 5 9 9 C 1.38806 * 120.00286 * 0.02562 * 7 6 5 10 10 N 1.31620 * 119.99790 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00329 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47344 * 59.99144 * 11 9 7 13 13 H 1.48496 * 109.47289 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47015 * 299.99534 * 11 9 7 15 15 C 1.47025 * 108.72015 * 24.06889 * 6 5 3 16 16 C 1.54322 * 107.27221 * 358.97684 * 15 6 5 17 17 H 1.08999 * 110.87113 * 96.24658 * 16 15 6 18 18 N 1.46509 * 110.71793 * 219.44238 * 16 15 6 19 19 C 1.34779 * 120.00081 * 268.52464 * 18 16 15 20 20 O 1.21284 * 119.99530 * 359.97438 * 19 18 16 21 21 C 1.50695 * 119.99864 * 180.02562 * 19 18 16 22 22 H 1.08999 * 109.47319 * 299.99901 * 21 19 18 23 23 C 1.52997 * 109.47249 * 59.99872 * 21 19 18 24 24 C 1.50699 * 109.46805 * 179.97438 * 21 19 18 25 25 C 1.39872 * 126.04399 * 300.02236 * 24 21 19 26 26 N 1.30837 * 108.20513 * 179.97438 * 25 24 21 27 27 N 1.40084 * 108.20545 * 0.02562 * 26 25 24 28 28 C 1.46504 * 126.04043 * 180.02562 * 27 26 25 29 29 C 1.34952 * 107.92368 * 359.75353 * 27 26 25 30 30 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 31 31 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 33 33 H 1.09001 * 110.36386 * 323.75517 * 5 3 2 34 34 H 1.09002 * 110.36619 * 86.07514 * 5 3 2 35 35 H 0.97003 * 119.99743 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.88022 * 239.55585 * 15 6 5 37 37 H 1.09000 * 110.00818 * 118.46769 * 15 6 5 38 38 H 0.96999 * 119.99590 * 88.52242 * 18 16 15 39 39 H 1.09007 * 109.47278 * 59.99902 * 23 21 19 40 40 H 1.09003 * 109.47386 * 180.02562 * 23 21 19 41 41 H 1.09004 * 109.47357 * 300.00073 * 23 21 19 42 42 H 1.08004 * 125.89482 * 0.02562 * 25 24 21 43 43 H 1.08996 * 109.46894 * 90.02084 * 28 27 26 44 44 H 1.08995 * 109.47254 * 210.02457 * 28 27 26 45 45 H 1.08999 * 109.46557 * 330.02021 * 28 27 26 46 46 H 1.08007 * 126.12428 * 180.24084 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3570 2.0217 0.4983 5 6 2.3417 1.7657 -1.4416 6 7 3.4270 2.7513 -1.2825 7 6 3.7340 3.7495 -2.1681 8 1 4.5515 4.4239 -1.9595 9 6 2.9942 3.8954 -3.3334 10 7 1.9977 3.0739 -3.5874 11 14 3.4135 5.2567 -4.5419 12 1 4.8078 5.0805 -5.0218 13 1 2.4819 5.1978 -5.6967 14 1 3.2847 6.5738 -3.8681 15 6 4.1245 2.4849 -0.0160 16 6 3.4173 1.2877 0.6536 17 1 3.9353 0.3554 0.4288 18 7 3.3188 1.4876 2.1016 19 6 4.2898 1.0245 2.9134 20 8 5.2449 0.4418 2.4452 21 6 4.1882 1.2296 4.4029 22 1 4.1495 2.2969 4.6209 23 6 2.9175 0.5561 4.9249 24 6 5.3913 0.6220 5.0768 25 6 5.7715 -0.7231 5.0258 26 7 6.8643 -0.8661 5.7309 27 7 7.2144 0.3852 6.2542 28 6 8.3743 0.6710 7.1022 29 6 6.2977 1.2822 5.8342 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 2.6817 0.9209 -2.0407 34 1 1.4698 2.2312 -1.9010 35 1 1.4809 3.1756 -4.4020 36 1 4.0650 3.3599 0.6312 37 1 5.1682 2.2377 -0.2099 38 1 2.5547 1.9533 2.4760 39 1 2.9561 -0.5112 4.7070 40 1 2.8437 0.7049 6.0022 41 1 2.0470 0.9952 4.4375 42 1 5.2529 -1.5080 4.4952 43 1 9.2264 0.9343 6.4756 44 1 8.1419 1.5024 7.7676 45 1 8.6175 -0.2112 7.6944 46 1 6.2881 2.3376 6.0634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082404518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:10 Heat of formation + Delta-G solvation = 7.118302 kcal Electronic energy + Delta-G solvation = -27665.983096 eV Core-core repulsion = 23785.782837 eV Total energy + Delta-G solvation = -3880.200259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.22369 -40.93287 -39.53792 -37.49335 -35.55899 -35.33540 -33.78419 -33.21647 -30.68313 -30.18431 -28.76360 -27.49972 -27.30237 -26.22543 -24.98049 -22.57738 -22.25917 -21.97707 -21.46425 -20.58096 -19.12687 -18.10935 -17.97175 -17.35015 -17.14373 -16.50575 -16.26058 -16.08329 -15.79896 -15.61930 -15.39930 -15.12326 -14.93483 -14.72026 -14.44074 -13.92905 -13.86292 -13.69499 -13.52833 -13.35937 -13.16149 -13.10872 -12.96145 -12.69408 -12.56950 -12.45240 -12.40349 -12.30379 -12.08140 -11.88213 -11.52758 -11.42260 -10.81796 -10.76231 -10.49344 -10.29055 -10.00664 -9.28161 -8.96284 -7.79840 -5.27303 1.00270 1.47409 1.51135 1.57365 1.72735 1.77228 1.79251 2.31853 2.47197 2.78627 3.30728 3.63981 3.64292 3.74302 3.90016 4.01213 4.06047 4.10782 4.27199 4.31999 4.39762 4.43314 4.46288 4.51143 4.54136 4.64649 4.69505 4.71447 4.86645 4.88700 4.91013 4.91300 4.99990 5.08209 5.23392 5.31197 5.42216 5.45093 5.53985 5.69396 5.70612 6.20325 6.21616 6.34495 6.67420 6.77782 7.05273 7.39323 7.70286 8.32993 9.21316 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.002967 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.686556 B = 9434.812040 C =10647.746716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.078 3.922 4 H 0.092 0.908 5 C 0.145 3.855 6 N -0.619 5.619 7 C -0.244 4.244 8 H 0.083 0.917 9 C -0.062 4.062 10 N -0.948 5.948 11 Si 0.984 3.016 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.271 1.271 15 C 0.132 3.868 16 C 0.154 3.846 17 H 0.074 0.926 18 N -0.702 5.702 19 C 0.514 3.486 20 O -0.580 6.580 21 C -0.016 4.016 22 H 0.133 0.867 23 C -0.133 4.133 24 C -0.236 4.236 25 C 0.062 3.938 26 N -0.344 5.344 27 N -0.383 5.383 28 C 0.094 3.906 29 C 0.068 3.932 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.033 0.967 33 H -0.016 1.016 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.046 0.954 37 H 0.010 0.990 38 H 0.415 0.585 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.169 0.831 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.088 0.912 46 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -0.953 24.485 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C 0.018 3.982 4 H 0.110 0.890 5 C 0.019 3.981 6 N -0.347 5.347 7 C -0.373 4.373 8 H 0.100 0.900 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.812 3.188 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.197 1.197 15 C 0.006 3.994 16 C 0.048 3.952 17 H 0.092 0.908 18 N -0.355 5.355 19 C 0.302 3.698 20 O -0.458 6.458 21 C -0.038 4.038 22 H 0.151 0.849 23 C -0.191 4.191 24 C -0.248 4.248 25 C -0.123 4.123 26 N -0.166 5.166 27 N -0.165 5.165 28 C -0.046 4.046 29 C -0.079 4.079 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.052 0.948 33 H 0.002 0.998 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.028 0.972 38 H 0.253 0.747 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.186 0.814 43 H 0.096 0.904 44 H 0.139 0.861 45 H 0.107 0.893 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.032 -2.264 24.514 24.702 hybrid contribution -0.581 1.110 -1.626 2.053 sum 1.451 -1.154 22.888 22.962 Atomic orbital electron populations 1.22975 0.79331 1.03814 1.00749 1.87846 1.21721 1.26942 1.94971 1.23612 0.93136 0.84805 0.96599 0.88997 1.22083 0.93489 0.90145 0.92375 1.44564 1.35489 1.34065 1.20548 1.19424 1.12783 1.05853 0.99228 0.89962 1.25659 0.98320 1.01709 0.99812 1.69995 1.22988 1.40103 1.26614 0.85073 0.77000 0.78797 0.77954 1.20889 1.21742 1.19683 1.21671 0.94382 0.95686 0.87694 1.21551 0.95527 0.97526 0.80630 0.90806 1.45779 1.25378 1.59295 1.05015 1.21432 0.81131 0.76967 0.90283 1.90703 1.33701 1.43201 1.78212 1.19544 0.94177 1.03195 0.86931 0.84910 1.21756 0.94302 1.00268 1.02759 1.19691 1.02394 0.93501 1.09218 1.23676 0.93843 0.97862 0.96904 1.77265 1.17315 1.03936 1.18107 1.48766 1.22497 1.05176 1.40092 1.22171 0.84583 1.04222 0.93587 1.22883 0.89549 0.97746 0.97702 0.91810 0.88019 0.94788 0.99762 0.89482 0.94047 0.93650 0.97173 0.74745 0.93460 0.89676 0.90292 0.81428 0.90422 0.86062 0.89292 0.76952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.87 113.37 1.23 1.95 16 2 O -0.40 -14.21 10.51 -148.98 -1.57 -15.77 16 3 C 0.08 2.96 3.14 31.99 0.10 3.06 16 4 H 0.09 3.01 7.73 -2.39 -0.02 2.99 16 5 C 0.15 7.32 5.62 86.85 0.49 7.81 16 6 N -0.62 -32.68 3.40 -691.88 -2.35 -35.03 16 7 C -0.24 -13.83 10.27 84.03 0.86 -12.97 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 10 N -0.95 -56.04 10.09 21.65 0.22 -55.82 16 11 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 15 C 0.13 5.84 6.99 86.73 0.61 6.45 16 16 C 0.15 5.84 3.06 46.18 0.14 5.98 16 17 H 0.07 3.25 7.55 -2.39 -0.02 3.23 16 18 N -0.70 -19.33 5.00 -436.91 -2.18 -21.51 16 19 C 0.51 14.71 7.11 87.66 0.62 15.33 16 20 O -0.58 -22.77 15.02 -3.04 -0.05 -22.81 16 21 C -0.02 -0.30 3.09 -12.29 -0.04 -0.34 16 22 H 0.13 1.60 8.11 -2.39 -0.02 1.59 16 23 C -0.13 -1.86 8.98 71.98 0.65 -1.22 16 24 C -0.24 -5.31 4.36 -20.14 -0.09 -5.40 16 25 C 0.06 1.73 10.77 85.24 0.92 2.65 16 26 N -0.34 -9.76 12.58 -57.02 -0.72 -10.48 16 27 N -0.38 -7.89 4.01 -369.56 -1.48 -9.38 16 28 C 0.09 0.99 11.47 127.77 1.47 2.46 16 29 C 0.07 1.22 11.38 83.54 0.95 2.17 16 30 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 31 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 33 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H 0.09 4.82 5.88 -2.39 -0.01 4.81 16 35 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.42 8.26 7.98 -92.71 -0.74 7.52 16 39 H 0.05 0.82 8.02 -2.38 -0.02 0.80 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.84 7.57 -2.38 -0.02 0.82 16 42 H 0.17 4.66 8.06 -2.91 -0.02 4.63 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 44 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -82.13 380.43 2.52 -79.61 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.24 Total: 18.92 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 8.38 Total: 24.89 kcal Atomic # 7 Polarization: -125.69 SS G_CDS: -6.51 Total: -132.21 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.61 Total: -38.59 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -82.13 2.52 -79.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082404518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.732 kcal (2) G-P(sol) polarization free energy of solvation -82.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds