Wall clock time and date at job start Fri Apr 10 2020 18:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00258 * 2 1 4 4 H 1.09010 * 109.46776 * 29.99635 * 3 2 1 5 5 C 1.50701 * 109.47226 * 270.00026 * 3 2 1 6 6 O 1.21287 * 119.99507 * 354.99885 * 5 3 2 7 7 N 1.34772 * 120.00387 * 174.99480 * 5 3 2 8 8 C 1.47428 * 125.64908 * 180.02562 * 7 5 3 9 9 C 1.54900 * 104.83449 * 204.09618 * 8 7 5 10 10 H 1.09011 * 111.00318 * 81.06450 * 9 8 7 11 11 C 1.52996 * 111.00779 * 204.91826 * 9 8 7 12 12 C 1.55161 * 101.58443 * 322.99535 * 9 8 7 13 13 H 1.09001 * 110.86964 * 277.07237 * 12 9 8 14 14 N 1.46499 * 110.72445 * 153.86349 * 12 9 8 15 15 C 1.36935 * 119.99938 * 160.02467 * 14 12 9 16 16 H 1.07999 * 120.00083 * 0.02562 * 15 14 12 17 17 C 1.38812 * 119.99632 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99535 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00187 * 0.27829 * 17 15 14 20 20 H 1.48501 * 109.46922 * 269.71949 * 19 17 15 21 21 H 1.48496 * 109.47354 * 29.72145 * 19 17 15 22 22 H 1.48501 * 109.47428 * 149.72253 * 19 17 15 23 23 C 1.47017 * 125.64569 * 359.97438 * 7 5 3 24 24 C 1.50695 * 109.47444 * 149.99664 * 3 2 1 25 25 C 1.39877 * 126.04037 * 40.02441 * 24 3 2 26 26 N 1.30835 * 108.20202 * 179.97438 * 25 24 3 27 27 N 1.40088 * 108.20728 * 359.97438 * 26 25 24 28 28 C 1.46499 * 126.03970 * 179.97438 * 27 26 25 29 29 C 1.34950 * 107.92665 * 359.76309 * 27 26 25 30 30 H 1.09000 * 109.47478 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47432 * 300.00178 * 1 2 3 32 32 H 1.08996 * 109.47061 * 60.00066 * 1 2 3 33 33 H 1.09005 * 110.36611 * 322.94125 * 8 7 5 34 34 H 1.09004 * 110.36164 * 85.14898 * 8 7 5 35 35 H 1.08998 * 109.47394 * 172.19820 * 11 9 8 36 36 H 1.08996 * 109.46838 * 292.19667 * 11 9 8 37 37 H 1.09000 * 109.46980 * 52.19595 * 11 9 8 38 38 H 0.97004 * 119.99469 * 340.02536 * 14 12 9 39 39 H 0.97005 * 119.99717 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.88548 * 59.56087 * 23 7 5 41 41 H 1.08995 * 110.01292 * 298.45786 * 23 7 5 42 42 H 1.07996 * 125.89550 * 359.97438 * 25 24 3 43 43 H 1.09000 * 109.46534 * 90.02779 * 28 27 26 44 44 H 1.08992 * 109.47568 * 210.03151 * 28 27 26 45 45 H 1.09004 * 109.46862 * 330.03273 * 28 27 26 46 46 H 1.08004 * 126.13320 * 180.23565 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6588 3.0124 -1.6686 8 6 2.9011 3.5889 -3.0037 9 6 3.9365 4.7165 -2.7668 10 1 4.9465 4.3118 -2.7000 11 6 3.8464 5.7824 -3.8606 12 6 3.4728 5.2829 -1.3987 13 1 2.6589 5.9960 -1.5294 14 7 4.5936 5.9028 -0.6876 15 6 4.3538 6.8041 0.3150 16 1 3.3384 7.0576 0.5818 17 6 5.4158 7.3911 0.9892 18 7 5.1852 8.2578 1.9526 19 14 7.1720 6.9574 0.5234 20 1 7.6278 5.8002 1.3348 21 1 7.2292 6.6046 -0.9179 22 1 8.0552 8.1226 0.7833 23 6 2.9811 4.0247 -0.6524 24 6 3.3386 1.2639 0.7104 25 6 4.2925 0.2456 0.6129 26 7 5.3096 0.5643 1.3717 27 7 5.0349 1.7977 1.9765 28 6 5.9115 2.5170 2.9041 29 6 3.8222 2.2084 1.5502 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.3098 2.8333 -3.6747 34 1 1.9779 3.9992 -3.4129 35 1 4.4833 6.6271 -3.5981 36 1 4.1773 5.3588 -4.8088 37 1 2.8144 6.1207 -3.9542 38 1 5.5055 5.6748 -0.9270 39 1 5.9274 8.6683 2.4235 40 1 3.7672 3.6530 0.0050 41 1 2.0921 4.2635 -0.0687 42 1 4.2047 -0.6492 0.0146 43 1 6.5675 3.1819 2.3422 44 1 5.3062 3.1030 3.5956 45 1 6.5131 1.8013 3.4644 46 1 3.3252 3.1252 1.8313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082667077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:21 Heat of formation + Delta-G solvation = 8.602896 kcal Electronic energy + Delta-G solvation = -29015.158037 eV Core-core repulsion = 25135.022155 eV Total energy + Delta-G solvation = -3880.135882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.48301 -41.08157 -39.43874 -38.02233 -35.92658 -34.50535 -33.96852 -32.98789 -32.12907 -29.67850 -29.14896 -27.74790 -27.20738 -26.05084 -25.38381 -22.95341 -22.13851 -21.82296 -21.57965 -20.31674 -19.47462 -18.64670 -17.77804 -17.75127 -17.05379 -16.74952 -16.39084 -16.29669 -16.08028 -15.49873 -15.30098 -15.22146 -14.85257 -14.60489 -14.40836 -14.26783 -14.03358 -13.74864 -13.72259 -13.61801 -13.34993 -13.15704 -13.00733 -12.92674 -12.88517 -12.42975 -12.20925 -12.16121 -11.92603 -11.77015 -11.69371 -11.60957 -11.40774 -10.97544 -10.52073 -10.42122 -9.63887 -9.46636 -9.30044 -7.97548 -5.31507 0.80717 1.38804 1.40273 1.42879 1.48410 1.56162 1.72640 1.90100 2.50140 2.84079 3.32658 3.33264 3.61100 3.64202 3.75326 3.83585 3.86903 4.02492 4.10486 4.14365 4.26669 4.35183 4.37196 4.41703 4.53345 4.57417 4.59293 4.66104 4.67096 4.76271 4.84040 4.87606 4.89384 4.89607 5.08310 5.10647 5.23679 5.29072 5.47053 5.52847 5.83304 5.94316 6.05683 6.25506 6.49274 6.62507 7.08818 7.11980 7.84984 8.03557 9.22871 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.005470 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.424279 B = 5117.590674 C = 6661.757055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.171 3.829 4 H 0.110 0.890 5 C 0.509 3.491 6 O -0.572 6.572 7 N -0.606 5.606 8 C 0.115 3.885 9 C -0.106 4.106 10 H 0.071 0.929 11 C -0.131 4.131 12 C 0.175 3.825 13 H 0.075 0.925 14 N -0.737 5.737 15 C -0.221 4.221 16 H 0.071 0.929 17 C -0.045 4.045 18 N -0.976 5.976 19 Si 0.933 3.067 20 H -0.276 1.276 21 H -0.262 1.262 22 H -0.304 1.304 23 C 0.073 3.927 24 C -0.256 4.256 25 C 0.069 3.931 26 N -0.325 5.325 27 N -0.371 5.371 28 C 0.094 3.906 29 C 0.091 3.909 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.363 0.637 39 H 0.256 0.744 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.187 0.813 43 H 0.068 0.932 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 -11.681 -3.180 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.290 6.290 3 C 0.108 3.892 4 H 0.128 0.872 5 C 0.298 3.702 6 O -0.451 6.451 7 N -0.340 5.340 8 C -0.008 4.008 9 C -0.126 4.126 10 H 0.090 0.910 11 C -0.188 4.188 12 C 0.066 3.934 13 H 0.093 0.907 14 N -0.379 5.379 15 C -0.352 4.352 16 H 0.088 0.912 17 C -0.238 4.238 18 N -0.626 5.626 19 Si 0.762 3.238 20 H -0.202 1.202 21 H -0.187 1.187 22 H -0.232 1.232 23 C -0.053 4.053 24 C -0.269 4.269 25 C -0.117 4.117 26 N -0.147 5.147 27 N -0.151 5.151 28 C -0.046 4.046 29 C -0.058 4.058 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.197 0.803 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.204 0.796 43 H 0.087 0.913 44 H 0.129 0.871 45 H 0.121 0.879 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.001 -12.457 -2.940 13.741 hybrid contribution 0.413 0.599 -0.284 0.781 sum -4.587 -11.858 -3.224 13.117 Atomic orbital electron populations 1.23051 0.79087 1.04426 1.00605 1.87946 1.21682 1.25066 1.94348 1.19761 0.92719 0.87015 0.89706 0.87244 1.21361 0.76380 0.80019 0.92451 1.90650 1.53169 1.53983 1.47334 1.48514 1.64286 1.12130 1.09062 1.22313 0.98883 0.94931 0.84658 1.22562 0.98479 0.95694 0.95893 0.91043 1.21599 1.02787 0.97309 0.97118 1.21393 0.90681 0.91676 0.89688 0.90723 1.42680 1.03572 1.50293 1.41346 1.19001 0.93776 1.14751 1.07678 0.91151 1.25199 1.00591 0.99381 0.98583 1.69841 1.31464 1.33923 1.27377 0.85751 0.82177 0.77030 0.78802 1.20225 1.18687 1.23154 1.23315 1.00881 0.89164 0.91890 1.19396 0.98895 0.99199 1.09383 1.23830 0.90481 0.99895 0.97501 1.77339 1.24085 0.98433 1.14839 1.48717 1.14768 1.15701 1.35934 1.22156 0.94492 0.96453 0.91504 1.22644 0.87676 0.99625 0.95848 0.87713 0.91848 0.94489 0.91236 0.89823 0.92989 0.91071 0.91304 0.80322 0.93482 0.90809 0.90548 0.79591 0.91333 0.87065 0.87857 0.78617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.81 113.37 1.23 1.70 16 2 O -0.37 -10.14 9.66 -129.99 -1.26 -11.39 16 3 C 0.17 4.52 2.41 29.10 0.07 4.59 16 4 H 0.11 2.36 7.78 -2.38 -0.02 2.34 16 5 C 0.51 15.82 7.18 87.66 0.63 16.45 16 6 O -0.57 -21.32 16.76 15.94 0.27 -21.05 16 7 N -0.61 -17.39 3.33 -811.79 -2.70 -20.09 16 8 C 0.11 3.00 6.37 86.85 0.55 3.56 16 9 C -0.11 -2.86 3.25 -9.40 -0.03 -2.89 16 10 H 0.07 2.07 8.00 -2.38 -0.02 2.05 16 11 C -0.13 -3.01 9.31 71.98 0.67 -2.34 16 12 C 0.18 5.52 3.06 46.18 0.14 5.66 16 13 H 0.07 2.39 8.02 -2.39 -0.02 2.37 16 14 N -0.74 -29.08 4.98 -317.31 -1.58 -30.66 16 15 C -0.22 -10.71 10.46 84.03 0.88 -9.83 16 16 H 0.07 3.70 8.06 -2.91 -0.02 3.68 16 17 C -0.05 -2.35 5.50 84.86 0.47 -1.89 16 18 N -0.98 -56.40 13.97 21.65 0.30 -56.09 16 19 Si 0.93 41.23 27.74 68.60 1.90 43.13 16 20 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.26 -10.75 6.52 99.48 0.65 -10.10 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 23 C 0.07 2.09 5.44 86.73 0.47 2.56 16 24 C -0.26 -7.17 4.55 -20.14 -0.09 -7.26 16 25 C 0.07 2.06 11.71 85.24 1.00 3.06 16 26 N -0.33 -10.24 12.58 -57.02 -0.72 -10.95 16 27 N -0.37 -10.43 4.01 -369.56 -1.48 -11.91 16 28 C 0.09 2.12 11.47 127.77 1.47 3.59 16 29 C 0.09 2.41 8.66 83.54 0.72 3.13 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 31 H 0.06 0.96 8.09 -2.39 -0.02 0.95 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 1.90 8.04 -2.38 -0.02 1.88 16 34 H 0.08 1.95 7.99 -2.38 -0.02 1.93 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 38 H 0.36 14.50 5.57 -92.71 -0.52 13.98 16 39 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 40 H 0.07 2.28 4.49 -2.39 -0.01 2.27 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.19 5.21 8.06 -2.91 -0.02 5.19 16 43 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 46 H 0.20 4.49 7.39 -2.91 -0.02 4.46 16 Total: -1.00 -67.87 376.94 3.31 -64.56 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.41 Total: 34.35 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 8.17 Total: 20.11 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -6.18 Total: -129.71 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.99 Total: -32.44 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.90 Total: 43.13 kcal Total: -67.87 3.31 -64.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082667077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.162 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds