Wall clock time and date at job start Fri Apr 10 2020 18:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 C 1.50707 * 109.46968 * 120.00096 * 2 1 3 5 5 C 1.35366 * 126.38708 * 325.32225 * 4 2 1 6 6 C 1.41498 * 105.50346 * 180.13931 * 5 4 2 7 7 C 1.47705 * 126.51967 * 179.84458 * 6 5 4 8 8 O 1.21573 * 119.99897 * 359.71576 * 7 6 5 9 9 N 1.34773 * 120.00318 * 179.72037 * 7 6 5 10 10 C 1.46500 * 120.00200 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.88857 * 34.29247 * 10 9 7 12 12 C 1.54915 * 111.03417 * 270.38731 * 10 9 7 13 13 N 1.47418 * 104.83107 * 204.89999 * 12 10 9 14 14 C 1.36939 * 125.65017 * 204.17029 * 13 12 10 15 15 H 1.07998 * 119.99534 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00342 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99981 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00118 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47103 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46701 * 120.00103 * 18 16 14 21 21 H 1.48494 * 109.47419 * 240.00108 * 18 16 14 22 22 C 1.47029 * 108.70495 * 24.13113 * 13 12 10 23 23 C 1.54327 * 107.26790 * 358.93814 * 22 13 12 24 24 H 1.09004 * 110.71649 * 219.44279 * 23 22 13 25 25 O 1.42898 * 110.86978 * 96.24495 * 23 22 13 26 26 N 1.31807 * 106.96351 * 359.58540 * 6 5 4 27 27 N 1.28470 * 110.07371 * 0.25938 * 26 6 5 28 28 C 1.46494 * 124.88766 * 180.02562 * 27 26 6 29 29 H 1.09007 * 109.47186 * 299.99967 * 1 2 3 30 30 H 1.09003 * 109.47164 * 59.99753 * 1 2 3 31 31 H 1.08995 * 109.47257 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46993 * 239.99887 * 2 1 3 33 33 H 1.09001 * 109.46955 * 60.00657 * 3 2 1 34 34 H 1.08998 * 109.46577 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47011 * 300.00047 * 3 2 1 36 36 H 1.08000 * 127.24566 * 359.97438 * 5 4 2 37 37 H 0.97001 * 119.99748 * 359.97438 * 9 7 6 38 38 H 1.08995 * 110.36257 * 323.74273 * 12 10 9 39 39 H 1.08997 * 110.36405 * 86.05992 * 12 10 9 40 40 H 0.96998 * 120.00328 * 179.97438 * 17 16 14 41 41 H 1.08993 * 109.88066 * 239.51797 * 22 13 12 42 42 H 1.08996 * 110.00664 * 118.42784 * 22 13 12 43 43 H 0.96699 * 114.00256 * 66.38577 * 25 23 22 44 44 H 1.09003 * 109.47229 * 90.02227 * 28 27 26 45 45 H 1.08996 * 109.47504 * 210.02540 * 28 27 26 46 46 H 1.09008 * 109.47172 * 330.02566 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.4551 -0.7014 2.4549 6 6 2.2886 -1.5014 3.2719 7 6 2.0888 -1.8014 4.7043 8 8 1.1323 -1.3383 5.2947 9 7 2.9670 -2.5884 5.3569 10 6 2.7685 -2.8863 6.7775 11 1 1.7071 -2.9589 7.0148 12 6 3.4660 -1.8296 7.6700 13 7 3.7250 -2.5237 8.9445 14 6 3.8850 -1.9208 10.1635 15 1 3.8247 -0.8457 10.2462 16 6 4.1248 -2.6915 11.2929 17 7 4.1988 -4.0017 11.1920 18 14 4.3424 -1.8690 12.9559 19 1 4.2143 -0.3977 12.8011 20 1 3.2990 -2.3605 13.8914 21 1 5.6860 -2.1951 13.4975 22 6 3.7822 -3.9707 8.6901 23 6 3.5191 -4.1819 7.1841 24 1 2.8918 -5.0583 7.0214 25 8 4.7479 -4.3013 6.4646 26 7 3.2741 -1.9326 2.5103 27 7 3.1389 -1.4797 1.3157 28 6 4.0532 -1.7580 0.2055 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6768 1.9563 0.8901 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 0.5504 -0.1891 2.7473 37 1 3.7300 -2.9581 4.8858 38 1 4.4032 -1.5084 7.2156 39 1 2.8087 -0.9750 7.8302 40 1 4.3667 -4.5402 11.9811 41 1 3.0168 -4.4804 9.2752 42 1 4.7672 -4.3568 8.9521 43 1 5.2558 -5.0949 6.6824 44 1 3.7237 -2.6539 -0.3207 45 1 4.0569 -0.9130 -0.4829 46 1 5.0596 -1.9145 0.5941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083453154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:25 Heat of formation + Delta-G solvation = 18.604448 kcal Electronic energy + Delta-G solvation = -27429.763023 eV Core-core repulsion = 23550.060840 eV Total energy + Delta-G solvation = -3879.702182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.81975 -39.35321 -37.70895 -36.10292 -34.76956 -33.85265 -33.58091 -31.58303 -29.81181 -28.61920 -27.73329 -27.55908 -26.71091 -24.53299 -23.26382 -22.66087 -20.61098 -20.32889 -20.01374 -19.31168 -17.61481 -17.18469 -16.65035 -16.43919 -16.34163 -15.20598 -14.92923 -14.71972 -14.45291 -14.34718 -14.05027 -13.90323 -13.78011 -13.43639 -13.05228 -12.96218 -12.90278 -12.64855 -12.53629 -12.49282 -12.12316 -11.95703 -11.61462 -11.27933 -11.23179 -10.90099 -10.83284 -10.80849 -10.44983 -10.37398 -10.07404 -9.80063 -9.75595 -9.24004 -9.19015 -9.02968 -8.63370 -8.52557 -6.81540 -5.69954 -3.02492 1.61030 2.05296 2.30123 3.42205 3.44787 3.49356 3.52091 3.65375 4.10236 4.20949 4.45081 4.53638 4.64518 4.67261 4.74826 4.86156 4.92411 5.03571 5.22029 5.27433 5.37368 5.38811 5.41882 5.46494 5.48933 5.60967 5.65688 5.71001 5.79200 5.83431 5.95214 5.98371 6.15350 6.30542 6.35788 6.62494 6.70958 6.75022 7.03760 7.39781 7.50610 7.73271 7.79198 8.04761 8.16065 8.25089 8.57061 9.23211 9.83299 10.48329 11.42507 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024692 B = 0.002566 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.681908 B =10910.147724 C =11430.518865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.022 4.022 3 C -0.145 4.145 4 C 0.012 3.988 5 C -0.173 4.173 6 C -0.007 4.007 7 C 0.598 3.402 8 O -0.537 6.537 9 N -0.694 5.694 10 C 0.138 3.862 11 H 0.105 0.895 12 C 0.131 3.869 13 N -0.601 5.601 14 C -0.221 4.221 15 H 0.080 0.920 16 C -0.011 4.011 17 N -0.927 5.927 18 Si 0.914 3.086 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.155 3.845 23 C 0.068 3.932 24 H 0.061 0.939 25 O -0.566 6.566 26 N -0.260 5.260 27 N -0.284 5.284 28 C 0.085 3.915 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.160 0.840 37 H 0.413 0.587 38 H 0.026 0.974 39 H 0.045 0.955 40 H 0.251 0.749 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.378 0.622 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.695 3.395 -27.404 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.203 4.203 4 C -0.112 4.112 5 C -0.201 4.201 6 C -0.168 4.168 7 C 0.382 3.618 8 O -0.412 6.412 9 N -0.345 5.345 10 C 0.033 3.967 11 H 0.123 0.877 12 C 0.004 3.996 13 N -0.328 5.328 14 C -0.349 4.349 15 H 0.098 0.902 16 C -0.207 4.207 17 N -0.576 5.576 18 Si 0.745 3.255 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.029 3.971 23 C 0.008 3.992 24 H 0.079 0.921 25 O -0.372 6.372 26 N -0.095 5.095 27 N -0.072 5.072 28 C -0.055 4.055 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.178 0.822 37 H 0.249 0.751 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.226 0.774 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.476 3.534 -27.060 27.402 hybrid contribution 0.145 0.018 0.924 0.936 sum -2.331 3.552 -26.135 26.478 Atomic orbital electron populations 1.21827 0.93007 1.02612 1.02662 1.19652 0.96826 0.95375 0.92404 1.21865 1.01025 0.94638 1.02766 1.21337 0.91044 1.00597 0.98177 1.21457 1.02887 1.04718 0.91051 1.21973 0.95668 1.03838 0.95283 1.16932 0.82615 0.78808 0.83453 1.90794 1.30750 1.52396 1.67261 1.45632 1.28110 1.49704 1.11041 1.22382 1.00116 0.95031 0.79193 0.87714 1.21839 0.96646 0.94167 0.86940 1.44294 1.84517 1.01502 1.02457 1.19151 1.41230 0.91488 0.83023 0.90205 1.24791 1.02251 0.95671 0.97975 1.69926 1.56428 1.03180 1.28022 0.85993 0.77274 0.78393 0.83840 1.20459 1.21750 1.21817 1.21853 1.01542 0.86143 0.87527 1.23505 0.85022 0.95911 0.94755 0.92128 1.86277 1.34940 1.48926 1.67041 1.73582 1.23748 1.20769 0.91383 1.45285 1.19364 1.34708 1.07796 1.22133 0.93878 1.03134 0.86375 0.91606 0.91828 0.92157 0.90298 0.91685 0.92746 0.91731 0.82222 0.75091 0.95591 0.93627 0.93827 0.92623 0.92915 0.77399 0.89814 0.88903 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.78 37.16 0.33 -0.55 16 2 C -0.02 -0.15 2.89 -91.77 -0.27 -0.41 16 3 C -0.15 -0.85 9.18 37.16 0.34 -0.51 16 4 C 0.01 0.13 5.84 -82.20 -0.48 -0.35 16 5 C -0.17 -2.28 9.95 -39.36 -0.39 -2.67 16 6 C -0.01 -0.11 7.13 -82.77 -0.59 -0.70 16 7 C 0.60 10.98 7.82 -12.39 -0.10 10.88 16 8 O -0.54 -11.33 16.62 5.30 0.09 -11.24 16 9 N -0.69 -12.45 5.17 -52.71 -0.27 -12.73 16 10 C 0.14 2.78 3.25 -65.78 -0.21 2.57 16 11 H 0.10 2.19 7.63 -51.93 -0.40 1.79 16 12 C 0.13 3.06 6.92 -2.53 -0.02 3.04 16 13 N -0.60 -16.03 3.39 -170.08 -0.58 -16.60 16 14 C -0.22 -6.37 10.28 -15.06 -0.15 -6.53 16 15 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 17 N -0.93 -27.36 10.31 55.49 0.57 -26.78 16 18 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 22 C 0.15 3.75 5.14 -3.06 -0.02 3.74 16 23 C 0.07 1.30 4.19 -24.90 -0.10 1.20 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 O -0.57 -9.75 12.14 -35.23 -0.43 -10.17 16 26 N -0.26 -3.64 11.67 33.42 0.39 -3.25 16 27 N -0.28 -3.01 3.70 -63.85 -0.24 -3.24 16 28 C 0.09 0.48 10.89 59.84 0.65 1.13 16 29 H 0.06 0.44 7.35 -51.92 -0.38 0.06 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.38 7.42 -51.93 -0.39 -0.01 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.16 1.98 7.46 -52.49 -0.39 1.58 16 37 H 0.41 7.03 7.29 -40.82 -0.30 6.73 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.06 1.47 7.38 -51.93 -0.38 1.09 16 42 H 0.05 1.39 7.44 -51.93 -0.39 1.00 16 43 H 0.38 5.05 9.12 45.56 0.42 5.46 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.29 7.45 -51.93 -0.39 -0.10 16 46 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -35.61 377.74 -7.27 -42.88 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.37 Total: 7.44 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -1.11 Total: 10.40 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.12 Total: -62.61 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.34 Total: -21.41 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.61 -7.27 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083453154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.483 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds