Wall clock time and date at job start Fri Apr 10 2020 18:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 C 1.50707 * 109.46968 * 120.00096 * 2 1 3 5 5 C 1.35366 * 126.38708 * 325.32225 * 4 2 1 6 6 C 1.41498 * 105.50346 * 180.13931 * 5 4 2 7 7 C 1.47705 * 126.51967 * 179.84458 * 6 5 4 8 8 O 1.21573 * 119.99897 * 359.71576 * 7 6 5 9 9 N 1.34773 * 120.00318 * 179.72037 * 7 6 5 10 10 C 1.46500 * 120.00200 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.88857 * 34.29247 * 10 9 7 12 12 C 1.54915 * 111.03417 * 270.38731 * 10 9 7 13 13 N 1.47418 * 104.83107 * 204.89999 * 12 10 9 14 14 C 1.36939 * 125.65017 * 204.17029 * 13 12 10 15 15 H 1.07998 * 119.99534 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00342 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99981 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00118 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47103 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46701 * 120.00103 * 18 16 14 21 21 H 1.48494 * 109.47419 * 240.00108 * 18 16 14 22 22 C 1.47029 * 108.70495 * 24.13113 * 13 12 10 23 23 C 1.54327 * 107.26790 * 358.93814 * 22 13 12 24 24 H 1.09004 * 110.71649 * 219.44279 * 23 22 13 25 25 O 1.42898 * 110.86978 * 96.24495 * 23 22 13 26 26 N 1.31807 * 106.96351 * 359.58540 * 6 5 4 27 27 N 1.28470 * 110.07371 * 0.25938 * 26 6 5 28 28 C 1.46494 * 124.88766 * 180.02562 * 27 26 6 29 29 H 1.09007 * 109.47186 * 299.99967 * 1 2 3 30 30 H 1.09003 * 109.47164 * 59.99753 * 1 2 3 31 31 H 1.08995 * 109.47257 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46993 * 239.99887 * 2 1 3 33 33 H 1.09001 * 109.46955 * 60.00657 * 3 2 1 34 34 H 1.08998 * 109.46577 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47011 * 300.00047 * 3 2 1 36 36 H 1.08000 * 127.24566 * 359.97438 * 5 4 2 37 37 H 0.97001 * 119.99748 * 359.97438 * 9 7 6 38 38 H 1.08995 * 110.36257 * 323.74273 * 12 10 9 39 39 H 1.08997 * 110.36405 * 86.05992 * 12 10 9 40 40 H 0.96998 * 120.00328 * 179.97438 * 17 16 14 41 41 H 1.08993 * 109.88066 * 239.51797 * 22 13 12 42 42 H 1.08996 * 110.00664 * 118.42784 * 22 13 12 43 43 H 0.96699 * 114.00256 * 66.38577 * 25 23 22 44 44 H 1.09003 * 109.47229 * 90.02227 * 28 27 26 45 45 H 1.08996 * 109.47504 * 210.02540 * 28 27 26 46 46 H 1.09008 * 109.47172 * 330.02566 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.4551 -0.7014 2.4549 6 6 2.2886 -1.5014 3.2719 7 6 2.0888 -1.8014 4.7043 8 8 1.1323 -1.3383 5.2947 9 7 2.9670 -2.5884 5.3569 10 6 2.7685 -2.8863 6.7775 11 1 1.7071 -2.9589 7.0148 12 6 3.4660 -1.8296 7.6700 13 7 3.7250 -2.5237 8.9445 14 6 3.8850 -1.9208 10.1635 15 1 3.8247 -0.8457 10.2462 16 6 4.1248 -2.6915 11.2929 17 7 4.1988 -4.0017 11.1920 18 14 4.3424 -1.8690 12.9559 19 1 4.2143 -0.3977 12.8011 20 1 3.2990 -2.3605 13.8914 21 1 5.6860 -2.1951 13.4975 22 6 3.7822 -3.9707 8.6901 23 6 3.5191 -4.1819 7.1841 24 1 2.8918 -5.0583 7.0214 25 8 4.7479 -4.3013 6.4646 26 7 3.2741 -1.9326 2.5103 27 7 3.1389 -1.4797 1.3157 28 6 4.0532 -1.7580 0.2055 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6768 1.9563 0.8901 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 0.5504 -0.1891 2.7473 37 1 3.7300 -2.9581 4.8858 38 1 4.4032 -1.5084 7.2156 39 1 2.8087 -0.9750 7.8302 40 1 4.3667 -4.5402 11.9811 41 1 3.0168 -4.4804 9.2752 42 1 4.7672 -4.3568 8.9521 43 1 5.2558 -5.0949 6.6824 44 1 3.7237 -2.6539 -0.3207 45 1 4.0569 -0.9130 -0.4829 46 1 5.0596 -1.9145 0.5941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083453154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:24 Heat of formation + Delta-G solvation = -9.087966 kcal Electronic energy + Delta-G solvation = -27430.963856 eV Core-core repulsion = 23550.060840 eV Total energy + Delta-G solvation = -3880.903015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.74533 -40.90768 -39.35092 -36.69949 -36.48923 -35.46913 -34.45958 -33.55244 -30.75914 -30.32028 -29.14442 -28.06486 -28.00681 -26.42955 -24.35718 -23.52975 -22.35003 -21.73400 -21.41228 -20.46888 -19.19897 -18.44544 -18.22304 -17.47098 -17.30233 -16.93326 -16.63500 -15.91943 -15.70607 -15.62255 -15.35459 -14.93736 -14.78847 -14.69465 -14.48100 -14.30870 -14.00152 -13.89822 -13.52054 -13.40845 -13.20872 -12.98535 -12.83243 -12.78383 -12.58588 -12.31159 -12.10571 -12.08978 -11.97543 -11.88973 -11.77802 -11.74135 -11.30025 -10.89133 -10.78407 -10.28203 -9.97505 -9.93323 -8.96530 -7.89463 -5.25698 0.49205 1.10343 1.44925 1.46251 1.54431 1.57133 2.06024 2.32641 2.48426 3.14373 3.29402 3.30098 3.51673 3.61378 3.78389 3.89030 3.93050 4.10318 4.20896 4.23016 4.37517 4.40625 4.45651 4.48977 4.61435 4.63525 4.66367 4.73320 4.80310 4.84617 4.99444 4.99797 5.02848 5.16577 5.29796 5.34950 5.39707 5.41645 5.45150 5.46695 5.63529 5.86551 6.13067 6.45983 6.84303 6.92401 7.05508 7.15628 7.68786 8.33288 9.20906 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024692 B = 0.002566 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.681908 B =10910.147724 C =11430.518865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.019 4.019 3 C -0.144 4.144 4 C 0.031 3.969 5 C -0.196 4.196 6 C -0.041 4.041 7 C 0.597 3.403 8 O -0.573 6.573 9 N -0.685 5.685 10 C 0.149 3.851 11 H 0.096 0.904 12 C 0.133 3.867 13 N -0.621 5.621 14 C -0.246 4.246 15 H 0.077 0.923 16 C -0.061 4.061 17 N -0.948 5.948 18 Si 0.982 3.018 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.162 3.838 23 C 0.092 3.908 24 H 0.093 0.907 25 O -0.565 6.565 26 N -0.272 5.272 27 N -0.273 5.273 28 C 0.070 3.930 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.156 0.844 37 H 0.419 0.581 38 H 0.021 0.979 39 H 0.030 0.970 40 H 0.250 0.750 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.398 0.602 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 3.626 -30.445 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 C -0.201 4.201 4 C -0.094 4.094 5 C -0.225 4.225 6 C -0.199 4.199 7 C 0.383 3.617 8 O -0.451 6.451 9 N -0.336 5.336 10 C 0.043 3.957 11 H 0.114 0.886 12 C 0.007 3.993 13 N -0.348 5.348 14 C -0.375 4.375 15 H 0.094 0.906 16 C -0.255 4.255 17 N -0.597 5.597 18 Si 0.810 3.190 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.214 1.214 22 C 0.036 3.964 23 C 0.032 3.968 24 H 0.111 0.889 25 O -0.374 6.374 26 N -0.109 5.109 27 N -0.062 5.062 28 C -0.068 4.068 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.174 0.826 37 H 0.257 0.743 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.249 0.751 44 H 0.123 0.877 45 H 0.143 0.857 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.873 3.747 -30.143 30.433 hybrid contribution 0.027 -0.027 1.729 1.730 sum -1.846 3.720 -28.414 28.716 Atomic orbital electron populations 1.21846 0.92796 1.02387 1.03176 1.19851 0.96947 0.95600 0.91476 1.21864 1.01182 0.94032 1.03068 1.21843 0.89973 0.99131 0.98430 1.21584 1.03305 1.05382 0.92183 1.21624 0.97721 1.06363 0.94198 1.17338 0.81809 0.77838 0.84665 1.90759 1.32177 1.53708 1.68489 1.45474 1.28407 1.49823 1.09898 1.22041 0.99308 0.94371 0.79994 0.88605 1.21841 0.96292 0.94629 0.86575 1.44567 1.84487 1.02829 1.02873 1.19455 1.41812 0.91757 0.84466 0.90561 1.25637 1.02040 0.96403 1.01372 1.70117 1.56646 1.04222 1.28724 0.84959 0.77010 0.77875 0.79151 1.19484 1.21489 1.21449 1.21711 0.99212 0.84588 0.90868 1.23155 0.86145 0.96431 0.91091 0.88924 1.86241 1.34462 1.50548 1.66142 1.73502 1.23370 1.21312 0.92726 1.45810 1.19651 1.33122 1.07600 1.22656 0.93184 1.05620 0.85341 0.92901 0.89576 0.92772 0.87257 0.93434 0.92483 0.89453 0.82590 0.74315 0.96116 0.95129 0.94057 0.95373 0.95347 0.75078 0.87676 0.85674 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.78 71.98 0.63 -0.80 16 2 C -0.02 -0.19 2.89 -11.54 -0.03 -0.22 16 3 C -0.14 -1.26 9.18 71.98 0.66 -0.60 16 4 C 0.03 0.58 5.84 41.41 0.24 0.82 16 5 C -0.20 -5.19 9.95 22.41 0.22 -4.96 16 6 C -0.04 -1.30 7.13 42.45 0.30 -1.00 16 7 C 0.60 22.57 7.82 86.75 0.68 23.25 16 8 O -0.57 -25.29 16.62 -3.94 -0.07 -25.36 16 9 N -0.68 -24.83 5.17 -438.95 -2.27 -27.10 16 10 C 0.15 6.10 3.25 46.38 0.15 6.25 16 11 H 0.10 4.12 7.63 -2.39 -0.02 4.10 16 12 C 0.13 6.44 6.92 86.86 0.60 7.04 16 13 N -0.62 -34.19 3.39 -692.00 -2.35 -36.54 16 14 C -0.25 -14.62 10.28 84.03 0.86 -13.76 16 15 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 16 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 17 N -0.95 -57.13 10.31 21.65 0.22 -56.90 16 18 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 22 C 0.16 8.04 5.14 86.73 0.45 8.48 16 23 C 0.09 3.48 4.19 31.78 0.13 3.61 16 24 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 25 O -0.57 -18.72 12.14 -148.98 -1.81 -20.53 16 26 N -0.27 -7.36 11.67 -48.18 -0.56 -7.93 16 27 N -0.27 -5.16 3.70 -355.92 -1.32 -6.48 16 28 C 0.07 0.52 10.89 127.77 1.39 1.91 16 29 H 0.05 0.67 7.35 -2.38 -0.02 0.65 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.11 0.48 7.42 -2.39 -0.02 0.47 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.16 4.06 7.46 -2.91 -0.02 4.04 16 37 H 0.42 14.10 7.29 -92.71 -0.68 13.42 16 38 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.03 1.54 7.38 -2.39 -0.02 1.52 16 42 H 0.03 1.53 7.44 -2.39 -0.02 1.52 16 43 H 0.40 9.88 9.12 -74.06 -0.68 9.21 16 44 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.12 0.15 7.45 -2.39 -0.02 0.14 16 46 H 0.10 0.74 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -80.31 377.74 0.29 -80.02 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -0.35 Total: 24.74 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 6.76 Total: 26.92 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -6.28 Total: -134.94 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -1.87 Total: -45.89 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -80.31 0.29 -80.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083453154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.932 kcal (2) G-P(sol) polarization free energy of solvation -80.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds