Wall clock time and date at job start Fri Apr 10 2020 18:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 C 1.52994 * 109.47133 * 240.00378 * 2 1 3 5 5 C 1.50699 * 109.46999 * 119.99848 * 2 1 3 6 6 N 1.35383 * 126.56806 * 2.28745 * 5 2 1 7 7 H 0.96993 * 126.13268 * 359.97438 * 6 5 2 8 8 C 1.35850 * 107.72835 * 180.23631 * 6 5 2 9 9 N 1.30174 * 109.00408 * 359.76085 * 8 6 5 10 10 C 1.35760 * 108.86591 * 359.97438 * 9 8 6 11 11 C 1.47324 * 126.23296 * 179.97438 * 10 9 8 12 12 O 1.21623 * 119.99932 * 174.71308 * 11 10 9 13 13 N 1.34779 * 120.00070 * 354.72144 * 11 10 9 14 14 C 1.46498 * 119.99807 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.78244 * 36.78776 * 14 13 11 16 16 C 1.54325 * 110.71915 * 273.54169 * 14 13 11 17 17 N 1.47028 * 107.26958 * 219.44808 * 16 14 13 18 18 C 1.36932 * 125.64662 * 178.98001 * 17 16 14 19 19 H 1.07996 * 119.99940 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00025 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99807 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00132 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47134 * 89.99786 * 22 20 18 24 24 H 1.48496 * 109.47014 * 209.99645 * 22 20 18 25 25 H 1.48501 * 109.47014 * 329.99691 * 22 20 18 26 26 C 1.47426 * 108.70189 * 358.93861 * 17 16 14 27 27 C 1.54906 * 104.83433 * 24.13139 * 26 17 16 28 28 H 1.08999 * 111.01037 * 204.91115 * 27 26 17 29 29 O 1.42904 * 111.00275 * 81.06169 * 27 26 17 30 30 H 1.09000 * 109.47035 * 299.99847 * 1 2 3 31 31 H 1.09002 * 109.47294 * 59.99660 * 1 2 3 32 32 H 1.08996 * 109.47210 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46886 * 185.12718 * 3 2 1 34 34 H 1.08994 * 109.47023 * 305.12893 * 3 2 1 35 35 H 1.09000 * 109.46977 * 65.13080 * 3 2 1 36 36 H 1.09006 * 109.46717 * 294.99844 * 4 2 1 37 37 H 1.08997 * 109.47486 * 55.00306 * 4 2 1 38 38 H 1.09001 * 109.47461 * 175.00917 * 4 2 1 39 39 H 1.07999 * 125.49129 * 179.79057 * 8 6 5 40 40 H 0.96996 * 120.00051 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.88050 * 100.03293 * 16 14 13 42 42 H 1.08997 * 109.88188 * 338.86069 * 16 14 13 43 43 H 0.97001 * 120.00024 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.36495 * 142.97081 * 26 17 16 45 45 H 1.09002 * 110.36883 * 265.18163 * 26 17 16 46 46 H 0.96699 * 114.00004 * 61.45688 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.2768 -1.3092 2.1810 7 1 0.3083 -1.3592 2.1943 8 6 2.1184 -1.8225 3.1157 9 7 3.3461 -1.5642 2.7683 10 6 3.3356 -0.8764 1.5979 11 6 4.5163 -0.3913 0.8624 12 8 4.3814 0.1310 -0.2277 13 7 5.7460 -0.5264 1.3974 14 6 6.9201 -0.0445 0.6656 15 1 6.6912 0.8775 0.1312 16 6 7.4389 -1.1249 -0.3066 17 7 8.9079 -1.0835 -0.2615 18 6 9.7512 -1.8997 -0.9670 19 1 9.3470 -2.6540 -1.6256 20 6 11.1258 -1.7575 -0.8355 21 7 11.6185 -0.8378 -0.0331 22 14 12.2763 -2.8714 -1.7973 23 1 12.5872 -2.2480 -3.1088 24 1 13.5333 -3.0649 -1.0308 25 1 11.6229 -4.1868 -2.0168 26 6 9.3225 -0.0171 0.6681 27 6 8.1197 0.1622 1.6278 28 1 8.1082 1.1640 2.0570 29 8 8.1306 -0.8323 2.6539 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1261 1.4439 -0.0918 34 1 1.6036 1.9822 -0.8404 35 1 1.7536 1.9292 0.9324 36 1 1.7516 -1.7714 -1.2056 37 1 1.6054 -0.2616 -2.1369 38 1 3.1263 -0.6444 -1.2951 39 1 1.8174 -2.3588 4.0035 40 1 5.8535 -0.9427 2.2668 41 1 7.0928 -0.9106 -1.3177 42 1 7.0860 -2.1070 0.0081 43 1 12.5790 -0.7381 0.0585 44 1 10.2091 -0.3219 1.2240 45 1 9.5162 0.9070 0.1234 46 1 8.9133 -0.8037 3.2210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083472109.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:32 Heat of formation + Delta-G solvation = 5.413443 kcal Electronic energy + Delta-G solvation = -28433.878777 eV Core-core repulsion = 24553.604590 eV Total energy + Delta-G solvation = -3880.274187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.45153 -39.33107 -37.78175 -36.72304 -34.60448 -33.77676 -32.75863 -31.52304 -29.42216 -28.39678 -27.40985 -27.16239 -26.87082 -24.61985 -23.18154 -22.15878 -20.83614 -20.47337 -19.74873 -19.22012 -17.93335 -17.19202 -16.59225 -16.04705 -15.51087 -15.38297 -14.78303 -14.75183 -14.73429 -14.49816 -14.24060 -14.01496 -13.60022 -13.37086 -12.88506 -12.82831 -12.50997 -12.45390 -12.26763 -11.82273 -11.52072 -11.41744 -11.20417 -11.05552 -11.03562 -10.92374 -10.78406 -10.47584 -10.27929 -10.21082 -10.16579 -9.94338 -9.77086 -9.45355 -9.15001 -8.64828 -8.62339 -8.36745 -6.78242 -5.63805 -3.03025 1.56538 2.39927 2.76292 3.43622 3.48394 3.50277 3.60604 3.70550 4.26109 4.48736 4.55196 4.60042 4.77051 4.78880 5.00925 5.16975 5.29837 5.36220 5.44535 5.48626 5.49081 5.56530 5.65082 5.74774 5.78973 5.81390 6.00003 6.01787 6.02933 6.04620 6.15332 6.36828 6.38620 6.46287 6.60279 6.79291 6.84458 7.04449 7.13833 7.34104 7.62244 7.65539 7.78065 8.09227 8.24035 8.38893 8.67911 9.24191 9.85254 10.49143 11.41429 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021264 B = 0.003118 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.441902 B = 8978.205437 C = 9417.873819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.013 3.987 3 C -0.157 4.157 4 C -0.158 4.158 5 C 0.078 3.922 6 N -0.565 5.565 7 H 0.421 0.579 8 C 0.179 3.821 9 N -0.457 5.457 10 C -0.056 4.056 11 C 0.595 3.405 12 O -0.536 6.536 13 N -0.690 5.690 14 C 0.143 3.857 15 H 0.100 0.900 16 C 0.132 3.868 17 N -0.597 5.597 18 C -0.214 4.214 19 H 0.078 0.922 20 C -0.014 4.014 21 N -0.928 5.928 22 Si 0.916 3.084 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.127 3.873 27 C 0.067 3.933 28 H 0.058 0.942 29 O -0.560 6.560 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.108 0.892 39 H 0.213 0.787 40 H 0.416 0.584 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.251 0.749 44 H 0.115 0.885 45 H 0.022 0.978 46 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.928 2.692 6.815 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.011 3.989 3 C -0.214 4.214 4 C -0.215 4.215 5 C -0.044 4.044 6 N -0.169 5.169 7 H 0.259 0.741 8 C -0.106 4.106 9 N -0.176 5.176 10 C -0.185 4.185 11 C 0.382 3.618 12 O -0.416 6.416 13 N -0.339 5.339 14 C 0.038 3.962 15 H 0.118 0.882 16 C 0.005 3.995 17 N -0.323 5.323 18 C -0.342 4.342 19 H 0.096 0.904 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.747 3.253 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.001 3.999 27 C 0.007 3.993 28 H 0.076 0.924 29 O -0.366 6.366 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.229 0.771 40 H 0.253 0.747 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.132 0.868 45 H 0.040 0.960 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -22.529 2.618 6.196 23.512 hybrid contribution -0.205 -0.559 -0.065 0.599 sum -22.734 2.058 6.131 23.636 Atomic orbital electron populations 1.22034 0.94874 1.01534 1.02588 1.19074 0.94114 0.95742 0.89936 1.22219 1.06220 0.92388 1.00588 1.22236 1.06511 0.98254 0.94491 1.21176 0.90862 0.99200 0.93144 1.43160 1.10598 1.43533 1.19561 0.74080 1.25118 0.84871 1.03656 0.96921 1.70644 1.20898 1.14370 1.11668 1.20392 0.92503 1.08811 0.96746 1.16906 0.81971 0.78436 0.84471 1.90506 1.85261 1.45402 1.20441 1.45660 1.04733 1.60259 1.23274 1.22154 0.82924 0.98241 0.92905 0.88195 1.21604 0.86030 0.95902 0.95965 1.44298 0.98935 1.38660 1.50435 1.19108 0.87038 1.10185 1.17869 0.90436 1.24748 0.96526 0.99261 1.00310 1.69724 1.11281 1.35677 1.41040 0.86037 0.80325 0.79927 0.79035 1.21682 1.21715 1.20728 1.22614 0.95168 0.91200 0.90931 1.23558 0.97071 0.89848 0.88838 0.92435 1.86261 1.47087 1.57228 1.45978 0.92821 0.91201 0.92846 0.87758 0.92401 0.93872 0.93871 0.92475 0.87391 0.77059 0.74730 0.95325 0.95231 0.93792 0.86793 0.95968 0.77316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 7.57 37.16 0.28 -0.85 16 2 C 0.01 0.14 0.75 -155.66 -0.12 0.02 16 3 C -0.16 -1.82 8.19 37.16 0.30 -1.52 16 4 C -0.16 -1.92 8.25 37.15 0.31 -1.61 16 5 C 0.08 0.92 5.59 -81.68 -0.46 0.46 16 6 N -0.57 -4.70 5.83 -10.11 -0.06 -4.76 16 7 H 0.42 1.95 8.10 -40.82 -0.33 1.62 16 8 C 0.18 1.68 13.04 -89.90 -1.17 0.51 16 9 N -0.46 -6.36 11.02 -11.03 -0.12 -6.48 16 10 C -0.06 -0.83 6.82 -83.09 -0.57 -1.39 16 11 C 0.60 10.17 7.51 -12.56 -0.09 10.08 16 12 O -0.54 -9.56 9.57 5.26 0.05 -9.51 16 13 N -0.69 -12.23 5.08 -53.13 -0.27 -12.50 16 14 C 0.14 2.78 3.12 -66.09 -0.21 2.57 16 15 H 0.10 1.91 7.70 -51.93 -0.40 1.51 16 16 C 0.13 3.04 6.99 -3.06 -0.02 3.02 16 17 N -0.60 -15.73 3.39 -170.07 -0.58 -16.31 16 18 C -0.21 -6.11 10.27 -15.06 -0.15 -6.27 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 21 N -0.93 -26.81 10.09 55.49 0.56 -26.25 16 22 Si 0.92 22.43 29.55 -169.99 -5.02 17.41 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 C 0.13 3.02 5.62 -2.53 -0.01 3.01 16 27 C 0.07 1.29 4.28 -24.58 -0.11 1.18 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 O -0.56 -10.31 12.23 -35.23 -0.43 -10.74 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.34 8.04 -51.93 -0.42 -0.08 16 33 H 0.10 1.51 4.55 -51.93 -0.24 1.28 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.11 1.66 4.64 -51.93 -0.24 1.42 16 39 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.42 7.41 7.29 -40.82 -0.30 7.11 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.72 8.03 -51.93 -0.42 0.30 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.11 2.99 5.88 -51.93 -0.31 2.69 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.38 5.76 9.11 45.56 0.42 6.18 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -33.69 362.38 -8.52 -42.22 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -6.00 Total: 12.73 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -2.11 Total: 8.73 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -0.47 Total: -66.30 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.38 Total: -20.25 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.69 -8.52 -42.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083472109.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.632 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds