Wall clock time and date at job start Fri Apr 10 2020 18:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 C 1.52994 * 109.47133 * 240.00378 * 2 1 3 5 5 C 1.50699 * 109.46999 * 119.99848 * 2 1 3 6 6 N 1.35383 * 126.56806 * 2.28745 * 5 2 1 7 7 H 0.96993 * 126.13268 * 359.97438 * 6 5 2 8 8 C 1.35850 * 107.72835 * 180.23631 * 6 5 2 9 9 N 1.30174 * 109.00408 * 359.76085 * 8 6 5 10 10 C 1.35760 * 108.86591 * 359.97438 * 9 8 6 11 11 C 1.47324 * 126.23296 * 179.97438 * 10 9 8 12 12 O 1.21623 * 119.99932 * 174.71308 * 11 10 9 13 13 N 1.34779 * 120.00070 * 354.72144 * 11 10 9 14 14 C 1.46498 * 119.99807 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.78244 * 36.78776 * 14 13 11 16 16 C 1.54325 * 110.71915 * 273.54169 * 14 13 11 17 17 N 1.47028 * 107.26958 * 219.44808 * 16 14 13 18 18 C 1.36932 * 125.64662 * 178.98001 * 17 16 14 19 19 H 1.07996 * 119.99940 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00025 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99807 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00132 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47134 * 89.99786 * 22 20 18 24 24 H 1.48496 * 109.47014 * 209.99645 * 22 20 18 25 25 H 1.48501 * 109.47014 * 329.99691 * 22 20 18 26 26 C 1.47426 * 108.70189 * 358.93861 * 17 16 14 27 27 C 1.54906 * 104.83433 * 24.13139 * 26 17 16 28 28 H 1.08999 * 111.01037 * 204.91115 * 27 26 17 29 29 O 1.42904 * 111.00275 * 81.06169 * 27 26 17 30 30 H 1.09000 * 109.47035 * 299.99847 * 1 2 3 31 31 H 1.09002 * 109.47294 * 59.99660 * 1 2 3 32 32 H 1.08996 * 109.47210 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46886 * 185.12718 * 3 2 1 34 34 H 1.08994 * 109.47023 * 305.12893 * 3 2 1 35 35 H 1.09000 * 109.46977 * 65.13080 * 3 2 1 36 36 H 1.09006 * 109.46717 * 294.99844 * 4 2 1 37 37 H 1.08997 * 109.47486 * 55.00306 * 4 2 1 38 38 H 1.09001 * 109.47461 * 175.00917 * 4 2 1 39 39 H 1.07999 * 125.49129 * 179.79057 * 8 6 5 40 40 H 0.96996 * 120.00051 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.88050 * 100.03293 * 16 14 13 42 42 H 1.08997 * 109.88188 * 338.86069 * 16 14 13 43 43 H 0.97001 * 120.00024 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.36495 * 142.97081 * 26 17 16 45 45 H 1.09002 * 110.36883 * 265.18163 * 26 17 16 46 46 H 0.96699 * 114.00004 * 61.45688 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.2768 -1.3092 2.1810 7 1 0.3083 -1.3592 2.1943 8 6 2.1184 -1.8225 3.1157 9 7 3.3461 -1.5642 2.7683 10 6 3.3356 -0.8764 1.5979 11 6 4.5163 -0.3913 0.8624 12 8 4.3814 0.1310 -0.2277 13 7 5.7460 -0.5264 1.3974 14 6 6.9201 -0.0445 0.6656 15 1 6.6912 0.8775 0.1312 16 6 7.4389 -1.1249 -0.3066 17 7 8.9079 -1.0835 -0.2615 18 6 9.7512 -1.8997 -0.9670 19 1 9.3470 -2.6540 -1.6256 20 6 11.1258 -1.7575 -0.8355 21 7 11.6185 -0.8378 -0.0331 22 14 12.2763 -2.8714 -1.7973 23 1 12.5872 -2.2480 -3.1088 24 1 13.5333 -3.0649 -1.0308 25 1 11.6229 -4.1868 -2.0168 26 6 9.3225 -0.0171 0.6681 27 6 8.1197 0.1622 1.6278 28 1 8.1082 1.1640 2.0570 29 8 8.1306 -0.8323 2.6539 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1261 1.4439 -0.0918 34 1 1.6036 1.9822 -0.8404 35 1 1.7536 1.9292 0.9324 36 1 1.7516 -1.7714 -1.2056 37 1 1.6054 -0.2616 -2.1369 38 1 3.1263 -0.6444 -1.2951 39 1 1.8174 -2.3588 4.0035 40 1 5.8535 -0.9427 2.2668 41 1 7.0928 -0.9106 -1.3177 42 1 7.0860 -2.1070 0.0081 43 1 12.5790 -0.7381 0.0585 44 1 10.2091 -0.3219 1.2240 45 1 9.5162 0.9070 0.1234 46 1 8.9133 -0.8037 3.2210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083472109.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:31 Heat of formation + Delta-G solvation = -20.088153 kcal Electronic energy + Delta-G solvation = -28434.984609 eV Core-core repulsion = 24553.604590 eV Total energy + Delta-G solvation = -3881.380019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.31171 -40.75830 -39.29710 -37.62997 -36.35151 -35.30245 -33.80994 -33.30489 -30.60942 -29.98874 -28.69756 -28.09760 -28.05634 -26.50992 -24.42906 -23.00135 -22.37399 -21.80286 -21.26569 -20.40576 -19.15169 -18.74725 -18.19078 -17.24406 -16.86363 -16.74155 -16.48120 -16.03552 -15.71506 -15.56158 -15.52103 -15.40435 -14.71406 -14.63082 -14.49719 -14.22527 -14.12677 -13.57037 -13.20721 -13.13773 -13.09964 -12.93188 -12.74041 -12.41017 -12.36875 -12.20626 -12.03700 -11.92659 -11.89541 -11.87527 -11.72268 -11.08637 -11.06086 -10.89690 -10.72102 -10.66964 -9.94946 -9.42993 -8.89583 -7.79876 -5.23127 0.57536 1.46588 1.48516 1.51327 1.57358 1.95935 2.34194 2.50911 2.55841 3.23861 3.31050 3.47565 3.61025 3.72779 3.85564 3.87628 3.98018 4.05511 4.26982 4.33537 4.35657 4.39278 4.50395 4.66209 4.75319 4.78827 4.87657 4.88732 4.91396 4.98776 5.03329 5.10607 5.14731 5.24520 5.34757 5.43196 5.47115 5.47390 5.59971 5.71238 5.83157 6.25793 6.38019 6.65292 6.89750 6.96893 7.09324 7.38107 7.73499 8.37106 9.22368 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021264 B = 0.003118 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.441902 B = 8978.205437 C = 9417.873819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.012 3.988 3 C -0.154 4.154 4 C -0.156 4.156 5 C 0.086 3.914 6 N -0.546 5.546 7 H 0.442 0.558 8 C 0.202 3.798 9 N -0.502 5.502 10 C -0.094 4.094 11 C 0.587 3.413 12 O -0.549 6.549 13 N -0.691 5.691 14 C 0.156 3.844 15 H 0.102 0.898 16 C 0.135 3.865 17 N -0.616 5.616 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.060 4.060 21 N -0.945 5.945 22 Si 0.982 3.018 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.275 1.275 26 C 0.128 3.872 27 C 0.088 3.912 28 H 0.092 0.908 29 O -0.564 6.564 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.259 0.741 40 H 0.415 0.585 41 H 0.015 0.985 42 H 0.014 0.986 43 H 0.250 0.750 44 H 0.091 0.909 45 H 0.004 0.996 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.606 2.317 8.047 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 C -0.212 4.212 4 C -0.213 4.213 5 C -0.038 4.038 6 N -0.151 5.151 7 H 0.284 0.716 8 C -0.084 4.084 9 N -0.221 5.221 10 C -0.221 4.221 11 C 0.376 3.624 12 O -0.430 6.430 13 N -0.341 5.341 14 C 0.050 3.950 15 H 0.120 0.880 16 C 0.009 3.991 17 N -0.342 5.342 18 C -0.371 4.371 19 H 0.090 0.910 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.810 3.190 23 H -0.213 1.213 24 H -0.214 1.214 25 H -0.200 1.200 26 C 0.003 3.997 27 C 0.027 3.973 28 H 0.110 0.890 29 O -0.373 6.373 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.275 0.725 40 H 0.253 0.747 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.060 0.940 44 H 0.109 0.891 45 H 0.022 0.978 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -25.256 2.247 7.443 26.426 hybrid contribution 0.563 -0.471 -0.445 0.859 sum -24.693 1.776 6.999 25.727 Atomic orbital electron populations 1.21992 0.91638 1.02920 1.03843 1.19107 0.96594 0.94588 0.88680 1.22131 1.04126 0.93480 1.01416 1.22148 1.04202 0.98836 0.96114 1.21235 0.90310 0.98529 0.93676 1.43092 1.11582 1.42172 1.18234 0.71559 1.26016 0.83682 1.01433 0.97269 1.70582 1.23600 1.15995 1.11961 1.20163 0.92565 1.11300 0.98082 1.17365 0.82415 0.78042 0.84532 1.90532 1.85586 1.45831 1.21086 1.45553 1.04491 1.60940 1.23088 1.21849 0.83962 0.96839 0.92360 0.88017 1.21609 0.84712 0.96447 0.96374 1.44560 1.00055 1.38832 1.50762 1.19391 0.88049 1.10945 1.18721 0.90999 1.25559 0.97709 1.00695 1.01315 1.69944 1.11312 1.36528 1.41656 0.85033 0.78080 0.78311 0.77593 1.21301 1.21355 1.19987 1.22502 0.96563 0.89598 0.91030 1.23318 0.94231 0.91591 0.88116 0.89009 1.86239 1.48032 1.57242 1.45741 0.91149 0.90485 0.91380 0.91005 0.91222 0.93215 0.93675 0.91249 0.90985 0.72495 0.74745 0.96678 0.96845 0.94027 0.89075 0.97799 0.75586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 7.57 71.98 0.54 -1.10 16 2 C 0.01 0.23 0.75 -52.93 -0.04 0.20 16 3 C -0.15 -3.45 8.19 71.98 0.59 -2.86 16 4 C -0.16 -3.73 8.25 71.98 0.59 -3.13 16 5 C 0.09 1.89 5.59 41.59 0.23 2.12 16 6 N -0.55 -7.19 5.83 -185.90 -1.08 -8.28 16 7 H 0.44 2.08 8.10 -92.71 -0.75 1.33 16 8 C 0.20 3.11 13.04 180.10 2.35 5.46 16 9 N -0.50 -13.30 11.02 -188.81 -2.08 -15.38 16 10 C -0.09 -2.76 6.82 40.50 0.28 -2.48 16 11 C 0.59 20.69 7.51 86.63 0.65 21.34 16 12 O -0.55 -20.55 9.57 -4.10 -0.04 -20.59 16 13 N -0.69 -25.10 5.08 -440.26 -2.24 -27.34 16 14 C 0.16 6.23 3.12 46.18 0.14 6.38 16 15 H 0.10 4.02 7.70 -2.39 -0.02 4.00 16 16 C 0.14 6.54 6.99 86.73 0.61 7.14 16 17 N -0.62 -33.69 3.39 -691.98 -2.35 -36.04 16 18 C -0.24 -14.31 10.27 84.03 0.86 -13.45 16 19 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 20 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 21 N -0.94 -55.69 10.09 21.65 0.22 -55.47 16 22 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 26 C 0.13 6.33 5.62 86.85 0.49 6.81 16 27 C 0.09 3.37 4.28 31.99 0.14 3.51 16 28 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 29 O -0.56 -20.62 12.23 -148.98 -1.82 -22.44 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.59 8.04 -2.39 -0.02 0.57 16 33 H 0.07 2.14 4.55 -2.39 -0.01 2.13 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 2.31 4.64 -2.39 -0.01 2.30 16 39 H 0.26 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.42 15.02 7.29 -92.71 -0.68 14.34 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.01 0.69 8.03 -2.39 -0.02 0.67 16 43 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 44 H 0.09 4.93 5.88 -2.39 -0.01 4.91 16 45 H 0.00 0.21 8.14 -2.39 -0.02 0.20 16 46 H 0.39 11.73 9.11 -74.06 -0.67 11.05 16 Total: -1.00 -76.68 362.38 -0.53 -77.22 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -1.07 Total: 32.68 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 7.90 Total: 26.93 kcal Atomic # 7 Polarization: -134.98 SS G_CDS: -7.53 Total: -142.51 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.86 Total: -43.04 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -76.68 -0.53 -77.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083472109.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.130 kcal (2) G-P(sol) polarization free energy of solvation -76.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds