Wall clock time and date at job start Fri Apr 10 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46783 * 2 1 4 4 N 1.46505 * 109.47136 * 179.97438 * 3 2 1 5 5 C 1.34256 * 125.75461 * 125.26241 * 4 3 2 6 6 C 1.38049 * 107.41580 * 180.14778 * 5 4 3 7 7 C 1.47425 * 126.41308 * 179.87007 * 6 5 4 8 8 O 1.21607 * 119.99972 * 359.71936 * 7 6 5 9 9 N 1.34776 * 120.00292 * 179.71251 * 7 6 5 10 10 C 1.46496 * 120.00325 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46088 * 325.00428 * 10 9 7 12 12 C 1.53039 * 109.45911 * 84.97894 * 10 9 7 13 13 C 1.53188 * 109.31193 * 181.38715 * 12 10 9 14 14 N 1.46929 * 108.77797 * 305.35942 * 13 12 10 15 15 C 1.36927 * 120.63358 * 233.59220 * 14 13 12 16 16 H 1.08006 * 120.00237 * 152.79634 * 15 14 13 17 17 C 1.38811 * 120.00049 * 332.79384 * 15 14 13 18 18 N 1.31618 * 119.99957 * 159.75784 * 17 15 14 19 19 Si 1.86799 * 120.00011 * 339.75563 * 17 15 14 20 20 H 1.48503 * 109.46807 * 94.89324 * 19 17 15 21 21 H 1.48502 * 109.47104 * 214.89187 * 19 17 15 22 22 H 1.48493 * 109.47067 * 334.89330 * 19 17 15 23 23 C 1.46927 * 118.73270 * 53.60735 * 14 13 12 24 24 C 1.53048 * 109.46116 * 205.03197 * 10 9 7 25 25 H 1.08999 * 109.49409 * 298.56724 * 24 10 9 26 26 O 1.42892 * 109.49548 * 58.66170 * 24 10 9 27 27 C 1.41291 * 107.17031 * 359.61280 * 6 5 4 28 28 N 1.30446 * 108.02051 * 0.23718 * 27 6 5 29 29 H 1.09002 * 109.47404 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47461 * 299.99712 * 1 2 3 31 31 H 1.08999 * 109.47459 * 60.00383 * 1 2 3 32 32 H 1.09001 * 109.47461 * 240.00288 * 2 1 3 33 33 H 1.08999 * 109.47459 * 119.99617 * 2 1 3 34 34 H 1.08997 * 109.47338 * 60.00059 * 3 2 1 35 35 H 1.09000 * 109.47540 * 299.99887 * 3 2 1 36 36 H 1.08001 * 126.29143 * 0.02562 * 5 4 3 37 37 H 0.97009 * 119.99421 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.49400 * 301.33168 * 12 10 9 39 39 H 1.09000 * 109.50086 * 61.43185 * 12 10 9 40 40 H 1.09004 * 109.59033 * 65.15078 * 13 12 10 41 41 H 1.09004 * 109.58576 * 185.57621 * 13 12 10 42 42 H 0.97009 * 119.99901 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.58824 * 66.18618 * 23 14 13 44 44 H 1.09000 * 109.58279 * 186.46029 * 23 14 13 45 45 H 0.96705 * 114.00101 * 179.97438 * 26 24 10 46 46 H 1.08000 * 125.98494 * 180.21592 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2897 2.0716 -0.8888 6 6 5.6000 1.8182 -0.5355 7 6 6.8042 2.3061 -1.2320 8 8 6.6933 3.0005 -2.2242 9 7 8.0280 1.9828 -0.7692 10 6 9.2246 2.4682 -1.4610 11 1 9.0359 2.5000 -2.5340 12 6 9.5674 3.8736 -0.9617 13 6 10.7984 4.3916 -1.7119 14 7 11.8875 3.4164 -1.5639 15 6 13.1134 3.8056 -1.0942 16 1 13.7451 3.0958 -0.5805 17 6 13.5443 5.1122 -1.2781 18 7 14.4983 5.6039 -0.5163 19 14 12.7704 6.1726 -2.6070 20 1 11.6793 6.9885 -2.0161 21 1 13.8014 7.0704 -3.1868 22 1 12.2153 5.3020 -3.6742 23 6 11.6361 2.0158 -1.9299 24 6 10.3957 1.5246 -1.1770 25 1 10.6010 1.5116 -0.1066 26 8 10.0629 0.2060 -1.6155 27 6 5.5707 1.0086 0.6221 28 7 4.3222 0.7918 0.9316 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6765 1.9564 -0.8900 36 1 3.9571 2.6649 -1.7277 37 1 8.1164 1.4287 0.0222 38 1 8.7239 4.5398 -1.1430 39 1 9.7806 3.8383 0.1067 40 1 10.5582 4.5135 -2.7682 41 1 11.1060 5.3493 -1.2921 42 1 14.7993 6.5172 -0.6446 43 1 11.4642 1.9440 -3.0039 44 1 12.4974 1.4065 -1.6562 45 1 10.7614 -0.4460 -1.4667 46 1 6.4313 0.6345 1.1568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090613139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:42 Heat of formation + Delta-G solvation = 11.338213 kcal Electronic energy + Delta-G solvation = -27263.712581 eV Core-core repulsion = 23383.695311 eV Total energy + Delta-G solvation = -3880.017270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56429 -39.52874 -37.91861 -35.79571 -35.61093 -34.33448 -32.27502 -31.84855 -30.71563 -29.92840 -29.09933 -26.94362 -25.12013 -22.98816 -22.71392 -22.69194 -21.60240 -20.89318 -20.04553 -19.65200 -18.05662 -17.13836 -16.64373 -16.26540 -16.04258 -15.86467 -15.23720 -14.96468 -14.75082 -14.48735 -14.37837 -13.99076 -13.76633 -13.61928 -13.23591 -13.01321 -12.78493 -12.77090 -12.47629 -12.45166 -12.19667 -11.97340 -11.91557 -11.51438 -11.48630 -11.16695 -11.10602 -10.96924 -10.16634 -10.11879 -9.94634 -9.83293 -9.81896 -9.59838 -9.50053 -8.94514 -8.67736 -8.59925 -7.05122 -5.98464 -3.36263 1.39398 2.04482 2.05868 3.33641 3.42689 3.49608 3.53205 3.58516 4.00096 4.30017 4.33497 4.48517 4.51197 4.54734 4.69294 4.79436 4.92756 4.94482 5.04435 5.10259 5.20346 5.25141 5.35524 5.45360 5.46114 5.52862 5.58865 5.60645 5.70329 5.80211 5.85125 6.09356 6.19747 6.29431 6.35123 6.44246 6.55085 6.57070 6.60918 6.79111 6.85079 7.31137 7.77684 7.81209 7.94089 8.27531 8.49563 8.87287 9.66852 10.02402 11.16855 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.002514 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.569998 B =11134.537273 C =11605.829714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.130 3.870 4 N -0.363 5.363 5 C 0.124 3.876 6 C -0.287 4.287 7 C 0.593 3.407 8 O -0.554 6.554 9 N -0.711 5.711 10 C 0.165 3.835 11 H 0.089 0.911 12 C -0.141 4.141 13 C 0.126 3.874 14 N -0.602 5.602 15 C -0.265 4.265 16 H 0.087 0.913 17 C 0.026 3.974 18 N -0.906 5.906 19 Si 0.881 3.119 20 H -0.287 1.287 21 H -0.302 1.302 22 H -0.268 1.268 23 C 0.124 3.876 24 C 0.079 3.921 25 H 0.061 0.939 26 O -0.569 6.569 27 C 0.082 3.918 28 N -0.297 5.297 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.187 0.813 37 H 0.396 0.604 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.263 0.737 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.375 0.625 46 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.818 -11.475 2.142 27.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.142 5.142 5 C -0.027 4.027 6 C -0.302 4.302 7 C 0.380 3.620 8 O -0.433 6.433 9 N -0.360 5.360 10 C 0.061 3.939 11 H 0.107 0.893 12 C -0.181 4.181 13 C 0.000 4.000 14 N -0.327 5.327 15 C -0.392 4.392 16 H 0.104 0.896 17 C -0.174 4.174 18 N -0.549 5.549 19 Si 0.712 3.288 20 H -0.215 1.215 21 H -0.231 1.231 22 H -0.193 1.193 23 C -0.003 4.003 24 C 0.018 3.982 25 H 0.079 0.921 26 O -0.373 6.373 27 C -0.106 4.106 28 N -0.117 5.117 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.204 0.796 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.222 0.778 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -26.273 -11.131 2.122 28.613 hybrid contribution 0.827 0.625 -0.684 1.242 sum -25.447 -10.506 1.438 27.568 Atomic orbital electron populations 1.21712 0.94277 1.02649 1.02200 1.21805 0.96504 0.95173 1.03992 1.21931 0.73513 0.99389 1.04270 1.48578 1.06852 1.38059 1.20728 1.22979 0.90161 0.95155 0.94412 1.20340 0.93575 1.13032 1.03226 1.17204 0.82252 0.79341 0.83159 1.90765 1.86888 1.39245 1.26430 1.45778 1.05194 1.53509 1.31508 1.20910 0.82236 0.92639 0.98150 0.89289 1.22430 0.99261 0.94942 1.01474 1.21384 0.87200 0.94086 0.97297 1.44316 1.09360 1.02973 1.76054 1.18883 0.93119 0.96904 1.30343 0.89574 1.25264 0.96544 0.97264 0.98312 1.69828 1.31371 1.15572 1.38097 0.86970 0.77493 0.80259 0.84128 1.21502 1.23054 1.19278 1.21551 0.94890 0.87153 0.96727 1.22730 0.95262 0.81824 0.98343 0.92081 1.86489 1.45385 1.18924 1.86513 1.24079 0.95294 0.96163 0.95036 1.77118 1.01796 1.19390 1.13389 0.91839 0.92223 0.92338 0.91255 0.90224 0.89335 0.88285 0.79635 0.77000 0.91404 0.91303 0.95047 0.90501 0.92679 0.94842 0.91209 0.77799 0.79401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.91 37.15 0.37 -0.19 16 2 C -0.14 -0.76 6.11 -26.73 -0.16 -0.93 16 3 C 0.13 0.75 6.49 -4.04 -0.03 0.73 16 4 N -0.36 -3.48 3.65 -60.80 -0.22 -3.70 16 5 C 0.12 1.32 11.25 -16.56 -0.19 1.13 16 6 C -0.29 -3.60 6.13 -105.07 -0.64 -4.25 16 7 C 0.59 9.20 7.78 -12.52 -0.10 9.11 16 8 O -0.55 -10.53 16.56 5.27 0.09 -10.44 16 9 N -0.71 -10.29 4.91 -54.84 -0.27 -10.56 16 10 C 0.16 2.81 2.12 -67.89 -0.14 2.66 16 11 H 0.09 1.73 7.57 -51.93 -0.39 1.33 16 12 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 13 C 0.13 2.79 4.19 -3.71 -0.02 2.77 16 14 N -0.60 -13.97 2.77 -172.32 -0.48 -14.45 16 15 C -0.26 -7.21 10.04 -15.06 -0.15 -7.36 16 16 H 0.09 2.48 8.06 -52.48 -0.42 2.05 16 17 C 0.03 0.73 5.24 -17.43 -0.09 0.64 16 18 N -0.91 -27.42 13.97 55.49 0.78 -26.65 16 19 Si 0.88 22.41 24.35 -169.99 -4.14 18.28 16 20 H -0.29 -7.11 6.70 56.52 0.38 -6.73 16 21 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 22 H -0.27 -6.73 6.45 56.52 0.36 -6.37 16 23 C 0.12 2.35 6.14 -3.71 -0.02 2.33 16 24 C 0.08 1.27 3.14 -26.61 -0.08 1.18 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 O -0.57 -7.93 13.16 -35.23 -0.46 -8.40 16 27 C 0.08 0.90 11.50 -16.98 -0.20 0.70 16 28 N -0.30 -3.36 12.33 30.86 0.38 -2.98 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.35 8.06 -51.93 -0.42 -0.07 16 36 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.40 4.69 7.56 -40.82 -0.31 4.38 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.03 0.71 6.98 -51.93 -0.36 0.34 16 41 H 0.08 1.84 4.50 -51.93 -0.23 1.61 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 45 H 0.38 3.67 9.08 45.56 0.41 4.09 16 46 H 0.19 1.51 7.50 -52.49 -0.39 1.12 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -35.27 372.69 -6.69 -41.96 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.38 Total: 5.56 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.60 Total: 5.76 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.19 Total: -58.34 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.38 Total: -18.84 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.14 Total: 18.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.27 -6.69 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090613139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.296 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds