Wall clock time and date at job start Fri Apr 10 2020 18:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46783 * 2 1 4 4 N 1.46505 * 109.47136 * 179.97438 * 3 2 1 5 5 C 1.34256 * 125.75461 * 125.26241 * 4 3 2 6 6 C 1.38049 * 107.41580 * 180.14778 * 5 4 3 7 7 C 1.47425 * 126.41308 * 179.87007 * 6 5 4 8 8 O 1.21607 * 119.99972 * 359.71936 * 7 6 5 9 9 N 1.34776 * 120.00292 * 179.71251 * 7 6 5 10 10 C 1.46496 * 120.00325 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46088 * 325.00428 * 10 9 7 12 12 C 1.53039 * 109.45911 * 84.97894 * 10 9 7 13 13 C 1.53188 * 109.31193 * 181.38715 * 12 10 9 14 14 N 1.46929 * 108.77797 * 305.35942 * 13 12 10 15 15 C 1.36927 * 120.63358 * 233.59220 * 14 13 12 16 16 H 1.08006 * 120.00237 * 152.79634 * 15 14 13 17 17 C 1.38811 * 120.00049 * 332.79384 * 15 14 13 18 18 N 1.31618 * 119.99957 * 159.75784 * 17 15 14 19 19 Si 1.86799 * 120.00011 * 339.75563 * 17 15 14 20 20 H 1.48503 * 109.46807 * 94.89324 * 19 17 15 21 21 H 1.48502 * 109.47104 * 214.89187 * 19 17 15 22 22 H 1.48493 * 109.47067 * 334.89330 * 19 17 15 23 23 C 1.46927 * 118.73270 * 53.60735 * 14 13 12 24 24 C 1.53048 * 109.46116 * 205.03197 * 10 9 7 25 25 H 1.08999 * 109.49409 * 298.56724 * 24 10 9 26 26 O 1.42892 * 109.49548 * 58.66170 * 24 10 9 27 27 C 1.41291 * 107.17031 * 359.61280 * 6 5 4 28 28 N 1.30446 * 108.02051 * 0.23718 * 27 6 5 29 29 H 1.09002 * 109.47404 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47461 * 299.99712 * 1 2 3 31 31 H 1.08999 * 109.47459 * 60.00383 * 1 2 3 32 32 H 1.09001 * 109.47461 * 240.00288 * 2 1 3 33 33 H 1.08999 * 109.47459 * 119.99617 * 2 1 3 34 34 H 1.08997 * 109.47338 * 60.00059 * 3 2 1 35 35 H 1.09000 * 109.47540 * 299.99887 * 3 2 1 36 36 H 1.08001 * 126.29143 * 0.02562 * 5 4 3 37 37 H 0.97009 * 119.99421 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.49400 * 301.33168 * 12 10 9 39 39 H 1.09000 * 109.50086 * 61.43185 * 12 10 9 40 40 H 1.09004 * 109.59033 * 65.15078 * 13 12 10 41 41 H 1.09004 * 109.58576 * 185.57621 * 13 12 10 42 42 H 0.97009 * 119.99901 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.58824 * 66.18618 * 23 14 13 44 44 H 1.09000 * 109.58279 * 186.46029 * 23 14 13 45 45 H 0.96705 * 114.00101 * 179.97438 * 26 24 10 46 46 H 1.08000 * 125.98494 * 180.21592 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2897 2.0716 -0.8888 6 6 5.6000 1.8182 -0.5355 7 6 6.8042 2.3061 -1.2320 8 8 6.6933 3.0005 -2.2242 9 7 8.0280 1.9828 -0.7692 10 6 9.2246 2.4682 -1.4610 11 1 9.0359 2.5000 -2.5340 12 6 9.5674 3.8736 -0.9617 13 6 10.7984 4.3916 -1.7119 14 7 11.8875 3.4164 -1.5639 15 6 13.1134 3.8056 -1.0942 16 1 13.7451 3.0958 -0.5805 17 6 13.5443 5.1122 -1.2781 18 7 14.4983 5.6039 -0.5163 19 14 12.7704 6.1726 -2.6070 20 1 11.6793 6.9885 -2.0161 21 1 13.8014 7.0704 -3.1868 22 1 12.2153 5.3020 -3.6742 23 6 11.6361 2.0158 -1.9299 24 6 10.3957 1.5246 -1.1770 25 1 10.6010 1.5116 -0.1066 26 8 10.0629 0.2060 -1.6155 27 6 5.5707 1.0086 0.6221 28 7 4.3222 0.7918 0.9316 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6765 1.9564 -0.8900 36 1 3.9571 2.6649 -1.7277 37 1 8.1164 1.4287 0.0222 38 1 8.7239 4.5398 -1.1430 39 1 9.7806 3.8383 0.1067 40 1 10.5582 4.5135 -2.7682 41 1 11.1060 5.3493 -1.2921 42 1 14.7993 6.5172 -0.6446 43 1 11.4642 1.9440 -3.0039 44 1 12.4974 1.4065 -1.6562 45 1 10.7614 -0.4460 -1.4667 46 1 6.4313 0.6345 1.1568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090613139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:41 Heat of formation + Delta-G solvation = -16.507876 kcal Electronic energy + Delta-G solvation = -27264.920078 eV Core-core repulsion = 23383.695311 eV Total energy + Delta-G solvation = -3881.224767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.38842 -40.82621 -39.29624 -37.09070 -36.31904 -35.71307 -34.00787 -32.75864 -32.03352 -31.14134 -30.54031 -27.69923 -26.68470 -24.33873 -24.21944 -23.33503 -22.91858 -21.68524 -21.35529 -20.82169 -19.15359 -18.71297 -18.01922 -17.63010 -17.01583 -16.73516 -16.63047 -16.17260 -16.02444 -15.61100 -15.39388 -15.31021 -15.05340 -14.86817 -14.53390 -14.11125 -13.99961 -13.83717 -13.79411 -13.61922 -13.21915 -13.15581 -12.92216 -12.91339 -12.63887 -12.39600 -12.14617 -12.07640 -11.86148 -11.69832 -11.60479 -11.40895 -11.13398 -10.92572 -10.65022 -10.57766 -10.10604 -9.62767 -8.99794 -8.17715 -5.50839 0.53624 1.17031 1.30004 1.37666 1.41416 1.49333 2.27870 2.40087 2.49523 2.94387 3.14118 3.38033 3.41632 3.77349 3.83069 3.89472 3.95181 4.04413 4.11530 4.13031 4.26247 4.27078 4.31164 4.34693 4.51681 4.56457 4.58720 4.69174 4.77186 4.80917 4.85211 4.90225 4.94136 5.06052 5.11479 5.14922 5.28389 5.35181 5.41204 5.53625 5.83032 5.87293 6.11311 6.49472 6.68793 6.81600 6.94965 7.34573 7.57688 7.97867 9.01210 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.002514 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.569998 B =11134.537273 C =11605.829714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.120 3.880 4 N -0.357 5.357 5 C 0.131 3.869 6 C -0.313 4.313 7 C 0.593 3.407 8 O -0.595 6.595 9 N -0.701 5.701 10 C 0.171 3.829 11 H 0.066 0.934 12 C -0.128 4.128 13 C 0.123 3.877 14 N -0.613 5.613 15 C -0.246 4.246 16 H 0.065 0.935 17 C -0.029 4.029 18 N -0.951 5.951 19 Si 0.935 3.065 20 H -0.279 1.279 21 H -0.309 1.309 22 H -0.264 1.264 23 C 0.119 3.881 24 C 0.100 3.900 25 H 0.072 0.928 26 O -0.568 6.568 27 C 0.086 3.914 28 N -0.317 5.317 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.205 0.795 37 H 0.411 0.589 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.029 0.971 41 H 0.056 0.944 42 H 0.262 0.738 43 H 0.033 0.967 44 H 0.078 0.922 45 H 0.397 0.603 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.430 -12.685 2.212 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.001 3.999 4 N -0.135 5.135 5 C -0.022 4.022 6 C -0.328 4.328 7 C 0.382 3.618 8 O -0.477 6.477 9 N -0.350 5.350 10 C 0.065 3.935 11 H 0.084 0.916 12 C -0.168 4.168 13 C -0.003 4.003 14 N -0.339 5.339 15 C -0.375 4.375 16 H 0.083 0.917 17 C -0.224 4.224 18 N -0.597 5.597 19 Si 0.765 3.235 20 H -0.206 1.206 21 H -0.238 1.238 22 H -0.189 1.189 23 C -0.007 4.007 24 C 0.039 3.961 25 H 0.090 0.910 26 O -0.375 6.375 27 C -0.101 4.101 28 N -0.137 5.137 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.145 0.855 36 H 0.221 0.779 37 H 0.248 0.752 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.096 0.904 45 H 0.247 0.753 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -28.938 -12.417 2.218 31.568 hybrid contribution 1.550 0.864 -0.695 1.906 sum -27.388 -11.553 1.523 29.764 Atomic orbital electron populations 1.21685 0.92690 1.02948 1.03060 1.21730 0.97762 0.94748 1.02641 1.22329 0.71457 0.99921 1.06209 1.48893 1.08004 1.36843 1.19743 1.23301 0.89869 0.94464 0.94560 1.20192 0.93105 1.15063 1.04473 1.17586 0.83026 0.78528 0.82634 1.90739 1.87449 1.41222 1.28330 1.45565 1.04252 1.53427 1.31760 1.20621 0.83635 0.92183 0.97030 0.91557 1.22241 0.97463 0.96029 1.01109 1.21350 0.88212 0.93282 0.97420 1.44401 1.08349 1.04877 1.76255 1.18879 0.93999 0.96150 1.28507 0.91741 1.25806 0.97636 0.98823 1.00172 1.69932 1.33726 1.16031 1.39984 0.86084 0.76671 0.78895 0.81847 1.20579 1.23819 1.18877 1.21754 0.96860 0.84919 0.97128 1.22290 0.93035 0.82562 0.98227 0.91038 1.86465 1.46378 1.18233 1.86424 1.24428 0.95947 0.95349 0.94416 1.77098 1.02140 1.20164 1.14304 0.91872 0.91600 0.91221 0.92206 0.91959 0.88248 0.85540 0.77852 0.75229 0.91295 0.90837 0.95351 0.92563 0.92905 0.94922 0.90357 0.75325 0.77178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 71.98 0.71 -0.06 16 2 C -0.13 -1.23 6.11 30.59 0.19 -1.04 16 3 C 0.12 1.09 6.49 86.38 0.56 1.65 16 4 N -0.36 -6.06 3.65 -346.28 -1.26 -7.33 16 5 C 0.13 2.52 11.25 84.28 0.95 3.47 16 6 C -0.31 -7.33 6.13 -20.15 -0.12 -7.46 16 7 C 0.59 17.60 7.78 86.66 0.67 18.28 16 8 O -0.60 -22.24 16.56 -4.05 -0.07 -22.30 16 9 N -0.70 -18.94 4.91 -445.67 -2.19 -21.13 16 10 C 0.17 5.55 2.12 45.02 0.10 5.64 16 11 H 0.07 2.51 7.57 -2.39 -0.02 2.49 16 12 C -0.13 -4.61 5.65 30.67 0.17 -4.44 16 13 C 0.12 5.35 4.19 86.36 0.36 5.72 16 14 N -0.61 -28.05 2.77 -699.10 -1.94 -29.99 16 15 C -0.25 -13.47 10.04 84.03 0.84 -12.63 16 16 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 17 C -0.03 -1.68 5.24 84.86 0.44 -1.23 16 18 N -0.95 -58.79 13.97 21.65 0.30 -58.48 16 19 Si 0.94 46.95 24.35 68.60 1.67 48.62 16 20 H -0.28 -13.44 6.70 99.48 0.67 -12.78 16 21 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 22 H -0.26 -12.91 6.45 99.48 0.64 -12.27 16 23 C 0.12 4.34 6.14 86.36 0.53 4.87 16 24 C 0.10 2.96 3.14 30.67 0.10 3.06 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 O -0.57 -14.11 13.16 -148.98 -1.96 -16.07 16 27 C 0.09 1.70 11.50 85.65 0.99 2.68 16 28 N -0.32 -6.57 12.33 -56.27 -0.69 -7.27 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.13 0.47 8.06 -2.39 -0.02 0.45 16 36 H 0.20 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.41 8.64 7.56 -92.70 -0.70 7.93 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 40 H 0.03 1.26 6.98 -2.38 -0.02 1.24 16 41 H 0.06 2.68 4.50 -2.39 -0.01 2.67 16 42 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 43 H 0.03 1.21 8.14 -2.38 -0.02 1.20 16 44 H 0.08 2.69 7.93 -2.39 -0.02 2.67 16 45 H 0.40 6.37 9.08 -74.05 -0.67 5.70 16 46 H 0.21 2.83 7.50 -2.91 -0.02 2.81 16 Total: -1.00 -76.78 372.69 -0.12 -76.90 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.47 Total: 18.53 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 6.49 Total: 18.51 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -5.78 Total: -124.20 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -2.03 Total: -38.37 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.67 Total: 48.62 kcal Total: -76.78 -0.12 -76.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090613139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.392 kcal (2) G-P(sol) polarization free energy of solvation -76.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds