Wall clock time and date at job start Fri Apr 10 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47101 * 2 1 4 4 N 1.46504 * 109.46933 * 119.99852 * 2 1 3 5 5 C 1.35031 * 124.88583 * 274.97651 * 4 2 1 6 6 C 1.35364 * 107.22645 * 179.72811 * 5 4 2 7 7 C 1.41501 * 105.50595 * 0.41140 * 6 5 4 8 8 C 1.47707 * 126.52197 * 179.84502 * 7 6 5 9 9 O 1.21574 * 119.99910 * 359.71418 * 8 7 6 10 10 N 1.34778 * 120.00011 * 179.71094 * 8 7 6 11 11 C 1.46497 * 119.99537 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46576 * 324.97525 * 11 10 8 13 13 C 1.53039 * 109.45201 * 84.94143 * 11 10 8 14 14 C 1.52760 * 109.38854 * 181.24803 * 13 11 10 15 15 N 1.46922 * 109.00877 * 305.58987 * 14 13 11 16 16 C 1.36932 * 120.63376 * 233.58214 * 15 14 13 17 17 H 1.08002 * 120.00663 * 152.17063 * 16 15 14 18 18 C 1.38819 * 119.99763 * 331.89781 * 16 15 14 19 19 N 1.31619 * 119.99653 * 343.16079 * 18 16 15 20 20 Si 1.86799 * 120.00056 * 163.16209 * 18 16 15 21 21 H 1.48498 * 109.47033 * 89.99898 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99748 * 20 18 16 23 23 H 1.48496 * 109.47329 * 330.00182 * 20 18 16 24 24 C 1.46930 * 118.73694 * 53.30539 * 15 14 13 25 25 C 1.53042 * 109.45737 * 205.00145 * 11 10 8 26 26 H 1.09002 * 109.49778 * 298.58124 * 25 11 10 27 27 O 1.42897 * 109.50086 * 58.67800 * 25 11 10 28 28 N 1.28473 * 124.88113 * 94.97355 * 4 2 1 29 29 H 1.09004 * 109.47070 * 59.99842 * 1 2 3 30 30 H 1.08995 * 109.47734 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47062 * 300.00268 * 1 2 3 32 32 H 1.08993 * 109.47063 * 239.99735 * 2 1 3 33 33 H 1.09000 * 109.46652 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47282 * 299.99819 * 3 2 1 35 35 H 1.09003 * 109.46709 * 60.00262 * 3 2 1 36 36 H 1.07999 * 126.38605 * 359.97438 * 5 4 2 37 37 H 1.08001 * 127.24989 * 180.26030 * 6 5 4 38 38 H 0.96996 * 120.00185 * 0.02562 * 10 8 7 39 39 H 1.08996 * 109.49950 * 301.33222 * 13 11 10 40 40 H 1.09007 * 109.49637 * 61.39055 * 13 11 10 41 41 H 1.08996 * 109.51085 * 185.70306 * 14 13 11 42 42 H 1.09005 * 109.42847 * 65.42406 * 14 13 11 43 43 H 0.97007 * 119.99830 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58541 * 66.43258 * 24 15 14 45 45 H 1.09000 * 109.58371 * 186.85719 * 24 15 14 46 46 H 0.96698 * 114.00308 * 179.83885 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1851 -0.1150 2.4063 6 6 2.6428 -1.0729 3.2461 7 6 2.7466 -2.2459 2.4615 8 6 3.2064 -3.5724 2.9203 9 8 3.5473 -3.7313 4.0764 10 7 3.2481 -4.6068 2.0572 11 6 3.7036 -5.9226 2.5124 12 1 4.4918 -5.7973 3.2549 13 6 2.5300 -6.6800 3.1377 14 6 3.0135 -8.0393 3.6398 15 7 3.6717 -8.7509 2.5357 16 6 3.2802 -10.0166 2.1896 17 1 3.4061 -10.3622 1.1741 18 6 2.7268 -10.8576 3.1453 19 7 2.8745 -10.5869 4.4249 20 14 1.7725 -12.3735 2.6154 21 1 2.7008 -13.5266 2.4976 22 1 0.7286 -12.6796 3.6262 23 1 1.1297 -12.1194 1.3012 24 6 4.7538 -8.0761 1.8059 25 6 4.2470 -6.7143 1.3207 26 1 3.4526 -6.8614 0.5890 27 8 5.3229 -5.9919 0.7187 28 7 2.3493 -1.9310 1.2448 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.9863 0.9162 2.6581 37 1 2.8813 -0.9641 4.2939 38 1 2.9764 -4.4800 1.1347 39 1 2.1286 -6.1045 3.9718 40 1 1.7515 -6.8269 2.3890 41 1 2.1620 -8.6208 3.9933 42 1 3.7226 -7.8935 4.4548 43 1 2.4875 -11.1744 5.0928 44 1 5.6076 -7.9335 2.4682 45 1 5.0501 -8.6820 0.9496 46 1 5.7179 -6.4371 -0.0434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090617146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:45 Heat of formation + Delta-G solvation = 14.347458 kcal Electronic energy + Delta-G solvation = -27579.921928 eV Core-core repulsion = 23700.035149 eV Total energy + Delta-G solvation = -3879.886779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.77229 -39.45805 -37.77784 -36.12798 -35.34367 -34.19814 -31.95972 -31.01878 -30.67340 -29.66933 -28.43852 -27.87859 -25.41586 -24.03490 -22.78111 -22.21697 -21.48748 -20.48944 -19.79391 -19.32707 -17.90133 -17.12680 -16.70450 -16.43000 -16.11315 -15.71048 -15.01365 -14.78908 -14.34085 -14.23737 -13.92028 -13.86259 -13.57267 -13.38791 -13.28055 -13.08871 -12.84385 -12.70460 -12.62444 -12.21032 -12.01818 -11.89751 -11.69758 -11.50695 -11.08217 -10.95252 -10.83585 -10.62011 -10.27451 -10.22531 -9.93727 -9.84507 -9.65430 -9.39867 -9.32864 -9.13209 -8.63722 -8.38198 -6.72317 -5.80918 -3.24797 1.63486 2.11483 2.22843 3.36639 3.43981 3.45802 3.50065 3.67791 3.95978 4.28546 4.42051 4.47739 4.56428 4.58185 4.66365 4.90099 5.01792 5.09201 5.24312 5.29218 5.36067 5.39205 5.44191 5.53786 5.58751 5.62989 5.65497 5.73296 5.84261 6.04820 6.18718 6.34546 6.41916 6.54574 6.60503 6.65751 6.74444 6.83751 6.97576 7.35377 7.65854 7.72543 7.76734 7.99026 8.01517 8.41931 8.56232 9.17377 9.79903 10.36106 11.27750 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.002637 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.184622 B =10617.143090 C =10690.773879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 C -0.164 4.164 4 N -0.280 5.280 5 C -0.022 4.022 6 C -0.180 4.180 7 C -0.010 4.010 8 C 0.600 3.400 9 O -0.536 6.536 10 N -0.702 5.702 11 C 0.163 3.837 12 H 0.089 0.911 13 C -0.147 4.147 14 C 0.171 3.829 15 N -0.588 5.588 16 C -0.258 4.258 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.899 5.899 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.122 3.878 25 C 0.080 3.920 26 H 0.056 0.944 27 O -0.570 6.570 28 N -0.262 5.262 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.402 0.598 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.024 0.976 43 H 0.255 0.745 44 H 0.030 0.970 45 H 0.060 0.940 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 24.167 -10.308 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 C -0.222 4.222 4 N -0.069 5.069 5 C -0.165 4.165 6 C -0.208 4.208 7 C -0.170 4.170 8 C 0.384 3.616 9 O -0.411 6.411 10 N -0.351 5.351 11 C 0.059 3.941 12 H 0.107 0.893 13 C -0.187 4.187 14 C 0.045 3.955 15 N -0.312 5.312 16 C -0.388 4.388 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.543 5.543 20 Si 0.733 3.267 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.006 4.006 25 C 0.019 3.981 26 H 0.074 0.926 27 O -0.374 6.374 28 N -0.097 5.097 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.195 0.805 37 H 0.179 0.821 38 H 0.236 0.764 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.622 23.961 -10.019 26.223 hybrid contribution -0.431 -0.712 -0.316 0.890 sum -4.053 23.249 -10.336 25.764 Atomic orbital electron populations 1.22233 0.92874 1.03823 1.03430 1.21568 0.95514 0.93305 0.85547 1.22194 1.02569 0.93527 1.03936 1.45724 1.45670 1.06019 1.09467 1.22705 1.07392 1.00735 0.85620 1.21789 1.06587 0.91127 1.01287 1.22090 1.07803 0.96428 0.90717 1.16886 0.77709 0.81760 0.85251 1.90794 1.49069 1.83568 1.17657 1.45931 1.65985 1.09679 1.13505 1.21039 0.97214 0.80182 0.95684 0.89296 1.22541 0.96791 0.99144 1.00216 1.20743 0.97906 0.87944 0.88890 1.44025 1.36081 1.13920 1.37198 1.19144 1.37074 0.89118 0.93437 0.91599 1.25073 1.01609 0.97691 0.95094 1.70040 1.46216 1.38814 0.99182 0.86287 0.79776 0.82873 0.77754 1.21346 1.21487 1.20471 1.21531 0.91766 0.90872 0.96453 1.22773 0.88527 0.92952 0.93823 0.92608 1.86498 1.51828 1.49662 1.49420 1.73511 1.16196 0.97700 1.22312 0.90061 0.91244 0.91599 0.87283 0.91215 0.89663 0.91222 0.80519 0.82136 0.76428 0.91798 0.92364 0.88883 0.95777 0.93461 0.95250 0.92189 0.78103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 9.52 37.16 0.35 -0.51 16 2 C 0.14 0.88 3.80 -67.93 -0.26 0.62 16 3 C -0.16 -0.61 8.80 37.16 0.33 -0.28 16 4 N -0.28 -2.85 3.22 -54.83 -0.18 -3.02 16 5 C -0.02 -0.21 10.54 -17.17 -0.18 -0.39 16 6 C -0.18 -2.31 10.81 -39.36 -0.43 -2.73 16 7 C -0.01 -0.15 7.13 -82.77 -0.59 -0.74 16 8 C 0.60 10.99 7.79 -12.39 -0.10 10.90 16 9 O -0.54 -11.45 16.59 5.30 0.09 -11.36 16 10 N -0.70 -12.23 4.92 -54.75 -0.27 -12.50 16 11 C 0.16 3.16 2.12 -67.89 -0.14 3.01 16 12 H 0.09 1.95 7.58 -51.93 -0.39 1.55 16 13 C -0.15 -3.05 5.63 -26.83 -0.15 -3.20 16 14 C 0.17 4.22 5.28 -3.93 -0.02 4.20 16 15 N -0.59 -14.75 3.00 -172.58 -0.52 -15.27 16 16 C -0.26 -7.02 9.58 -15.06 -0.14 -7.16 16 17 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 18 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 19 N -0.90 -26.20 11.18 55.49 0.62 -25.58 16 20 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.12 2.55 6.14 -3.71 -0.02 2.53 16 25 C 0.08 1.45 3.14 -26.61 -0.08 1.37 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 O -0.57 -9.18 13.16 -35.23 -0.46 -9.64 16 28 N -0.26 -3.57 11.67 33.42 0.39 -3.18 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.07 0.21 7.05 -51.93 -0.37 -0.16 16 36 H 0.18 0.99 7.16 -52.49 -0.38 0.61 16 37 H 0.16 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.40 6.35 8.33 -40.82 -0.34 6.01 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.09 2.52 6.05 -51.93 -0.31 2.21 16 42 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 46 H 0.37 4.34 9.08 45.56 0.41 4.75 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -34.43 376.85 -7.61 -42.04 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.41 Total: 8.68 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.52 Total: 7.64 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.05 Total: -59.55 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.38 Total: -21.01 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.43 -7.61 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090617146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.386 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds