Wall clock time and date at job start Fri Apr 10 2020 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47101 * 2 1 4 4 N 1.46504 * 109.46933 * 119.99852 * 2 1 3 5 5 C 1.35031 * 124.88583 * 274.97651 * 4 2 1 6 6 C 1.35364 * 107.22645 * 179.72811 * 5 4 2 7 7 C 1.41501 * 105.50595 * 0.41140 * 6 5 4 8 8 C 1.47707 * 126.52197 * 179.84502 * 7 6 5 9 9 O 1.21574 * 119.99910 * 359.71418 * 8 7 6 10 10 N 1.34778 * 120.00011 * 179.71094 * 8 7 6 11 11 C 1.46497 * 119.99537 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46576 * 324.97525 * 11 10 8 13 13 C 1.53039 * 109.45201 * 84.94143 * 11 10 8 14 14 C 1.52760 * 109.38854 * 181.24803 * 13 11 10 15 15 N 1.46922 * 109.00877 * 305.58987 * 14 13 11 16 16 C 1.36932 * 120.63376 * 233.58214 * 15 14 13 17 17 H 1.08002 * 120.00663 * 152.17063 * 16 15 14 18 18 C 1.38819 * 119.99763 * 331.89781 * 16 15 14 19 19 N 1.31619 * 119.99653 * 343.16079 * 18 16 15 20 20 Si 1.86799 * 120.00056 * 163.16209 * 18 16 15 21 21 H 1.48498 * 109.47033 * 89.99898 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99748 * 20 18 16 23 23 H 1.48496 * 109.47329 * 330.00182 * 20 18 16 24 24 C 1.46930 * 118.73694 * 53.30539 * 15 14 13 25 25 C 1.53042 * 109.45737 * 205.00145 * 11 10 8 26 26 H 1.09002 * 109.49778 * 298.58124 * 25 11 10 27 27 O 1.42897 * 109.50086 * 58.67800 * 25 11 10 28 28 N 1.28473 * 124.88113 * 94.97355 * 4 2 1 29 29 H 1.09004 * 109.47070 * 59.99842 * 1 2 3 30 30 H 1.08995 * 109.47734 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47062 * 300.00268 * 1 2 3 32 32 H 1.08993 * 109.47063 * 239.99735 * 2 1 3 33 33 H 1.09000 * 109.46652 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47282 * 299.99819 * 3 2 1 35 35 H 1.09003 * 109.46709 * 60.00262 * 3 2 1 36 36 H 1.07999 * 126.38605 * 359.97438 * 5 4 2 37 37 H 1.08001 * 127.24989 * 180.26030 * 6 5 4 38 38 H 0.96996 * 120.00185 * 0.02562 * 10 8 7 39 39 H 1.08996 * 109.49950 * 301.33222 * 13 11 10 40 40 H 1.09007 * 109.49637 * 61.39055 * 13 11 10 41 41 H 1.08996 * 109.51085 * 185.70306 * 14 13 11 42 42 H 1.09005 * 109.42847 * 65.42406 * 14 13 11 43 43 H 0.97007 * 119.99830 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58541 * 66.43258 * 24 15 14 45 45 H 1.09000 * 109.58371 * 186.85719 * 24 15 14 46 46 H 0.96698 * 114.00308 * 179.83885 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1851 -0.1150 2.4063 6 6 2.6428 -1.0729 3.2461 7 6 2.7466 -2.2459 2.4615 8 6 3.2064 -3.5724 2.9203 9 8 3.5473 -3.7313 4.0764 10 7 3.2481 -4.6068 2.0572 11 6 3.7036 -5.9226 2.5124 12 1 4.4918 -5.7973 3.2549 13 6 2.5300 -6.6800 3.1377 14 6 3.0135 -8.0393 3.6398 15 7 3.6717 -8.7509 2.5357 16 6 3.2802 -10.0166 2.1896 17 1 3.4061 -10.3622 1.1741 18 6 2.7268 -10.8576 3.1453 19 7 2.8745 -10.5869 4.4249 20 14 1.7725 -12.3735 2.6154 21 1 2.7008 -13.5266 2.4976 22 1 0.7286 -12.6796 3.6262 23 1 1.1297 -12.1194 1.3012 24 6 4.7538 -8.0761 1.8059 25 6 4.2470 -6.7143 1.3207 26 1 3.4526 -6.8614 0.5890 27 8 5.3229 -5.9919 0.7187 28 7 2.3493 -1.9310 1.2448 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.9863 0.9162 2.6581 37 1 2.8813 -0.9641 4.2939 38 1 2.9764 -4.4800 1.1347 39 1 2.1286 -6.1045 3.9718 40 1 1.7515 -6.8269 2.3890 41 1 2.1620 -8.6208 3.9933 42 1 3.7226 -7.8935 4.4548 43 1 2.4875 -11.1744 5.0928 44 1 5.6076 -7.9335 2.4682 45 1 5.0501 -8.6820 0.9496 46 1 5.7179 -6.4371 -0.0434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090617146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:44 Heat of formation + Delta-G solvation = -12.189088 kcal Electronic energy + Delta-G solvation = -27581.072639 eV Core-core repulsion = 23700.035149 eV Total energy + Delta-G solvation = -3881.037490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.67404 -40.97255 -39.34962 -37.00074 -36.71960 -35.79781 -33.82305 -32.09251 -31.89046 -31.06282 -30.09616 -28.21352 -27.19474 -25.28479 -24.04132 -23.70842 -23.01924 -21.54493 -21.13413 -20.70463 -19.09617 -18.62198 -18.03903 -17.71335 -17.34038 -16.97443 -16.73648 -15.88075 -15.72988 -15.67853 -15.35098 -15.03277 -14.98586 -14.67635 -14.54345 -14.05158 -13.91802 -13.81703 -13.61383 -13.29415 -13.24721 -13.04964 -12.98603 -12.71089 -12.40932 -12.34505 -12.14396 -12.12192 -12.08622 -11.90417 -11.88851 -11.49755 -11.19107 -11.03508 -10.57585 -10.30558 -10.11795 -9.93546 -8.77068 -7.90198 -5.37794 0.53245 1.20447 1.47991 1.49645 1.50201 1.59776 2.14273 2.37155 2.49356 3.10045 3.26582 3.32038 3.61373 3.73814 3.84925 3.89041 3.93190 4.03515 4.07372 4.19619 4.23596 4.36847 4.52085 4.64872 4.66488 4.67190 4.76613 4.77212 4.82688 4.84425 4.89057 4.92454 5.00322 5.10675 5.18948 5.24271 5.32949 5.37210 5.44143 5.59504 5.65047 5.92491 6.33618 6.44899 6.87088 6.93142 7.09182 7.17730 7.77324 8.30723 9.17559 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.002637 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.184622 B =10617.143090 C =10690.773879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.269 5.269 5 C 0.003 3.997 6 C -0.205 4.205 7 C -0.045 4.045 8 C 0.597 3.403 9 O -0.577 6.577 10 N -0.692 5.692 11 C 0.169 3.831 12 H 0.059 0.941 13 C -0.129 4.129 14 C 0.181 3.819 15 N -0.603 5.603 16 C -0.266 4.266 17 H 0.077 0.923 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.972 3.028 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.266 1.266 24 C 0.119 3.881 25 C 0.103 3.897 26 H 0.071 0.929 27 O -0.571 6.571 28 N -0.273 5.273 29 H 0.108 0.892 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.224 0.776 37 H 0.161 0.839 38 H 0.412 0.588 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.065 0.935 42 H -0.007 1.007 43 H 0.251 0.749 44 H 0.014 0.986 45 H 0.078 0.922 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 26.617 -13.285 30.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 C -0.217 4.217 4 N -0.059 5.059 5 C -0.140 4.140 6 C -0.233 4.233 7 C -0.203 4.203 8 C 0.383 3.617 9 O -0.456 6.456 10 N -0.342 5.342 11 C 0.064 3.936 12 H 0.077 0.923 13 C -0.169 4.169 14 C 0.055 3.945 15 N -0.328 5.328 16 C -0.396 4.396 17 H 0.095 0.905 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.800 3.200 21 H -0.210 1.210 22 H -0.221 1.221 23 H -0.191 1.191 24 C -0.007 4.007 25 C 0.041 3.959 26 H 0.089 0.911 27 O -0.378 6.378 28 N -0.111 5.111 29 H 0.126 0.874 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.240 0.760 37 H 0.178 0.822 38 H 0.248 0.752 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.011 0.989 43 H 0.060 0.940 44 H 0.032 0.968 45 H 0.096 0.904 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.589 26.428 -13.078 29.841 hybrid contribution -0.084 -1.340 0.523 1.441 sum -4.673 25.088 -12.555 28.441 Atomic orbital electron populations 1.22227 0.91798 1.02833 1.05040 1.22033 0.96314 0.94527 0.83959 1.22219 1.02046 0.91583 1.05829 1.46262 1.43657 1.05079 1.10895 1.23273 1.04491 1.01835 0.84368 1.21990 1.08107 0.91247 1.01931 1.21747 1.10594 0.95677 0.92296 1.17347 0.76795 0.82908 0.84684 1.90759 1.50955 1.84479 1.19366 1.45730 1.65770 1.08732 1.13923 1.20733 0.95725 0.81315 0.95816 0.92259 1.22267 0.97467 0.96988 1.00218 1.20449 0.96086 0.89438 0.88529 1.44233 1.37354 1.13902 1.37317 1.19563 1.36416 0.89725 0.93874 0.90515 1.25911 1.02852 1.00889 0.95062 1.70211 1.47560 1.40127 1.00313 0.85211 0.78081 0.79201 0.77532 1.21032 1.22135 1.19050 1.21682 0.90282 0.92493 0.96276 1.22312 0.89307 0.90831 0.93407 0.91098 1.86470 1.51284 1.49506 1.50580 1.73433 1.16558 0.99630 1.21451 0.87378 0.93499 0.91088 0.87316 0.92013 0.87283 0.89878 0.75970 0.82186 0.75194 0.92427 0.91412 0.91709 0.98857 0.93992 0.96784 0.90364 0.75394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.52 71.98 0.69 -0.49 16 2 C 0.13 1.22 3.80 44.99 0.17 1.39 16 3 C -0.16 -0.52 8.80 71.98 0.63 0.11 16 4 N -0.27 -4.86 3.22 -327.38 -1.05 -5.92 16 5 C 0.00 0.05 10.54 83.54 0.88 0.94 16 6 C -0.20 -5.12 10.81 22.41 0.24 -4.88 16 7 C -0.04 -1.39 7.13 42.46 0.30 -1.09 16 8 C 0.60 22.54 7.79 86.75 0.68 23.22 16 9 O -0.58 -25.98 16.59 -3.95 -0.07 -26.05 16 10 N -0.69 -24.35 4.92 -445.41 -2.19 -26.54 16 11 C 0.17 6.70 2.12 45.02 0.10 6.79 16 12 H 0.06 2.73 7.58 -2.39 -0.02 2.71 16 13 C -0.13 -5.55 5.63 30.53 0.17 -5.38 16 14 C 0.18 9.37 5.28 86.22 0.45 9.83 16 15 N -0.60 -30.78 3.00 -699.93 -2.10 -32.88 16 16 C -0.27 -14.48 9.58 84.04 0.81 -13.67 16 17 H 0.08 3.94 7.88 -2.91 -0.02 3.92 16 18 C -0.05 -2.89 4.92 84.86 0.42 -2.48 16 19 N -0.94 -56.52 11.18 21.65 0.24 -56.27 16 20 Si 0.97 44.67 29.59 68.60 2.03 46.69 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 24 C 0.12 4.98 6.14 86.36 0.53 5.51 16 25 C 0.10 3.62 3.14 30.67 0.10 3.71 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 27 O -0.57 -17.35 13.16 -148.98 -1.96 -19.31 16 28 N -0.27 -7.17 11.67 -48.18 -0.56 -7.74 16 29 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.08 0.08 7.05 -2.39 -0.02 0.06 16 36 H 0.22 1.42 7.16 -2.91 -0.02 1.40 16 37 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 38 H 0.41 12.75 8.33 -92.71 -0.77 11.98 16 39 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 41 H 0.06 3.70 6.05 -2.39 -0.01 3.69 16 42 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 43 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 44 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 2.95 7.93 -2.39 -0.02 2.93 16 46 H 0.40 8.08 9.08 -74.06 -0.67 7.41 16 Total: -1.00 -78.40 376.85 0.06 -78.34 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.44 Total: 26.16 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.16 Total: 23.51 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -5.66 Total: -129.35 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -2.03 Total: -45.36 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -78.40 0.06 -78.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090617146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.152 kcal (2) G-P(sol) polarization free energy of solvation -78.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds