Wall clock time and date at job start Fri Apr 10 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47217 * 2 1 4 4 N 1.46495 * 109.46808 * 120.00377 * 2 1 3 5 5 C 1.35042 * 124.88347 * 275.01826 * 4 2 1 6 6 C 1.35358 * 107.22801 * 179.76603 * 5 4 2 7 7 C 1.41504 * 105.50469 * 0.35944 * 6 5 4 8 8 C 1.47711 * 126.51714 * 179.90078 * 7 6 5 9 9 O 1.21575 * 120.00046 * 359.70972 * 8 7 6 10 10 N 1.34768 * 119.99991 * 179.71451 * 8 7 6 11 11 C 1.46501 * 120.00125 * 180.27653 * 10 8 7 12 12 H 1.09000 * 109.46056 * 34.75172 * 11 10 8 13 13 C 1.53034 * 109.46034 * 274.79138 * 11 10 8 14 14 C 1.53191 * 109.31363 * 178.61552 * 13 11 10 15 15 N 1.46924 * 108.77778 * 54.63506 * 14 13 11 16 16 C 1.36936 * 120.63391 * 126.41612 * 15 14 13 17 17 H 1.08002 * 120.00002 * 332.60224 * 16 15 14 18 18 C 1.38807 * 120.00164 * 152.60501 * 16 15 14 19 19 N 1.31625 * 120.00217 * 159.34245 * 18 16 15 20 20 Si 1.86806 * 120.00145 * 339.34163 * 18 16 15 21 21 H 1.48505 * 109.46695 * 92.94397 * 20 18 16 22 22 H 1.48493 * 109.47415 * 212.94419 * 20 18 16 23 23 H 1.48494 * 109.46766 * 332.94587 * 20 18 16 24 24 C 1.46930 * 118.73532 * 306.38968 * 15 14 13 25 25 C 1.53049 * 109.46071 * 154.72058 * 11 10 8 26 26 H 1.08997 * 109.49570 * 61.40374 * 25 11 10 27 27 O 1.42899 * 109.49493 * 301.33758 * 25 11 10 28 28 N 1.28465 * 124.89213 * 95.02385 * 4 2 1 29 29 H 1.08999 * 109.46802 * 300.00421 * 1 2 3 30 30 H 1.08999 * 109.46648 * 59.99588 * 1 2 3 31 31 H 1.08994 * 109.47035 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46451 * 239.99968 * 2 1 3 33 33 H 1.08991 * 109.47280 * 60.00090 * 3 2 1 34 34 H 1.08998 * 109.46925 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46849 * 300.00057 * 3 2 1 36 36 H 1.08004 * 126.38317 * 359.96814 * 5 4 2 37 37 H 1.08007 * 127.24862 * 180.23976 * 6 5 4 38 38 H 0.97002 * 119.99869 * 359.97438 * 10 8 7 39 39 H 1.09007 * 109.49716 * 298.56430 * 13 11 10 40 40 H 1.08999 * 109.50360 * 58.65886 * 13 11 10 41 41 H 1.08993 * 109.58502 * 294.84315 * 14 13 11 42 42 H 1.09004 * 109.58861 * 174.41852 * 14 13 11 43 43 H 0.96999 * 120.00305 * 180.02562 * 19 18 16 44 44 H 1.08995 * 109.58778 * 293.82088 * 24 15 14 45 45 H 1.09004 * 109.70181 * 173.46386 * 24 15 14 46 46 H 0.96700 * 113.99798 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1844 -0.1153 2.4065 6 6 2.6431 -1.0729 3.2460 7 6 2.7472 -2.2457 2.4613 8 6 3.2070 -3.5723 2.9201 9 8 3.5477 -3.7313 4.0762 10 7 3.2491 -4.6065 2.0570 11 6 3.6994 -5.9238 2.5135 12 1 3.3793 -6.0801 3.5436 13 6 5.2263 -5.9949 2.4380 14 6 5.6957 -7.3609 2.9485 15 7 5.0044 -8.4123 2.1900 16 6 5.7142 -9.3988 1.5591 17 1 6.7242 -9.2092 1.2268 18 6 5.1357 -10.6425 1.3464 19 7 5.6160 -11.4417 0.4174 20 14 3.6754 -11.1822 2.3789 21 1 2.4153 -10.8224 1.6803 22 1 3.7275 -12.6526 2.5797 23 1 3.7226 -10.5006 3.6973 24 6 3.5369 -8.3855 2.1219 25 6 3.0917 -7.0081 1.6205 26 1 3.4311 -6.8667 0.5944 27 8 1.6662 -6.9211 1.6678 28 7 2.3502 -1.9308 1.2446 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.9849 0.9158 2.6585 37 1 2.8816 -0.9641 4.2938 38 1 2.9770 -4.4798 1.1346 39 1 5.5460 -5.8635 1.4042 40 1 5.6582 -5.2076 3.0557 41 1 5.4565 -7.4570 4.0075 42 1 6.7721 -7.4545 2.8049 43 1 5.2115 -12.3107 0.2685 44 1 3.1218 -8.5652 3.1135 45 1 3.1869 -9.1553 1.4341 46 1 1.2137 -7.5804 1.1240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090617148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:48 Heat of formation + Delta-G solvation = -8.196455 kcal Electronic energy + Delta-G solvation = -27707.348814 eV Core-core repulsion = 23826.484457 eV Total energy + Delta-G solvation = -3880.864356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.67438 -41.04366 -39.49280 -37.06435 -36.72669 -35.89745 -34.11571 -32.21251 -31.88841 -31.14914 -30.53471 -28.22364 -27.15539 -25.27944 -24.49977 -23.62579 -23.01140 -21.53218 -21.24714 -20.78268 -19.17405 -18.61227 -18.33570 -17.70916 -17.68190 -17.00111 -16.69134 -16.13851 -15.82314 -15.66057 -15.31111 -15.13349 -15.01388 -14.70318 -14.64365 -14.36231 -14.06278 -13.94322 -13.84619 -13.66479 -13.25397 -13.10226 -13.05445 -12.72242 -12.51846 -12.38008 -12.35256 -12.14186 -12.03002 -11.90236 -11.74286 -11.48475 -11.24687 -11.13095 -10.69835 -10.32539 -10.13254 -9.95624 -9.03547 -8.19440 -5.53388 0.53376 1.20809 1.25603 1.41331 1.49142 1.50100 2.11263 2.37218 2.37627 2.86358 3.11551 3.31175 3.31572 3.71021 3.77068 3.88028 3.92818 3.97436 4.03691 4.06590 4.21376 4.23307 4.32603 4.53468 4.64883 4.66390 4.66597 4.72343 4.77288 4.78827 4.83690 4.87592 4.88572 4.89876 4.99448 5.17950 5.23503 5.28053 5.33623 5.42017 5.81092 5.92158 6.10063 6.42978 6.69395 6.85890 6.92476 7.15850 7.54828 7.95093 8.99843 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023985 B = 0.002787 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.104531 B =10045.912971 C =10372.625072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.270 5.270 5 C 0.002 3.998 6 C -0.203 4.203 7 C -0.046 4.046 8 C 0.600 3.400 9 O -0.573 6.573 10 N -0.694 5.694 11 C 0.167 3.833 12 H 0.071 0.929 13 C -0.127 4.127 14 C 0.145 3.855 15 N -0.614 5.614 16 C -0.251 4.251 17 H 0.060 0.940 18 C -0.029 4.029 19 N -0.951 5.951 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.309 1.309 23 H -0.269 1.269 24 C 0.099 3.901 25 C 0.097 3.903 26 H 0.068 0.932 27 O -0.570 6.570 28 N -0.276 5.276 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.223 0.777 37 H 0.163 0.837 38 H 0.411 0.589 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.263 0.737 44 H 0.034 0.966 45 H 0.067 0.933 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 29.552 -2.091 32.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.217 4.217 4 N -0.060 5.060 5 C -0.141 4.141 6 C -0.231 4.231 7 C -0.204 4.204 8 C 0.386 3.614 9 O -0.451 6.451 10 N -0.343 5.343 11 C 0.062 3.938 12 H 0.089 0.911 13 C -0.167 4.167 14 C 0.020 3.980 15 N -0.339 5.339 16 C -0.380 4.380 17 H 0.078 0.922 18 C -0.224 4.224 19 N -0.597 5.597 20 Si 0.769 3.231 21 H -0.193 1.193 22 H -0.238 1.238 23 H -0.194 1.194 24 C -0.027 4.027 25 C 0.036 3.964 26 H 0.086 0.914 27 O -0.377 6.377 28 N -0.113 5.113 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.065 0.935 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.239 0.761 37 H 0.180 0.820 38 H 0.247 0.753 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.125 29.387 -2.126 31.861 hybrid contribution -0.437 -1.298 0.441 1.439 sum -12.562 28.090 -1.685 30.817 Atomic orbital electron populations 1.22222 0.91811 1.02809 1.05030 1.22017 0.96316 0.94521 0.84005 1.22213 1.02046 0.91591 1.05814 1.46241 1.43716 1.05118 1.10880 1.23291 1.04538 1.01894 0.84387 1.21989 1.08004 0.91136 1.01941 1.21784 1.10569 0.95812 0.92226 1.17260 0.76681 0.82833 0.84591 1.90748 1.50999 1.84262 1.19077 1.45732 1.65914 1.08636 1.14066 1.20777 0.94062 0.80656 0.98317 0.91069 1.22249 0.93653 0.98378 1.02429 1.21090 0.96937 0.86233 0.93718 1.44419 1.00890 1.29224 1.59386 1.18878 0.99161 0.90507 1.29449 0.92211 1.25853 1.01342 0.96189 0.99031 1.69948 1.45440 1.11407 1.32870 0.86028 0.80457 0.75839 0.80818 1.19322 1.23828 1.19416 1.22040 0.84838 0.96592 0.99225 1.22411 0.80958 0.94331 0.98701 0.91401 1.86445 1.17600 1.60163 1.73505 1.73438 1.16551 0.99619 1.21706 0.91010 0.87478 0.93518 0.87461 0.89808 0.92010 0.87393 0.76071 0.81967 0.75289 0.91210 0.90442 0.94818 0.91062 0.92760 0.94831 0.91498 0.75653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.52 71.98 0.69 -0.41 16 2 C 0.13 1.16 3.80 44.99 0.17 1.33 16 3 C -0.16 -0.46 8.81 71.98 0.63 0.18 16 4 N -0.27 -4.60 3.22 -327.37 -1.05 -5.66 16 5 C 0.00 0.03 10.54 83.53 0.88 0.91 16 6 C -0.20 -4.64 10.81 22.41 0.24 -4.39 16 7 C -0.05 -1.31 7.13 42.46 0.30 -1.01 16 8 C 0.60 20.60 7.79 86.75 0.68 21.28 16 9 O -0.57 -23.04 16.59 -3.95 -0.07 -23.10 16 10 N -0.69 -22.41 4.91 -445.41 -2.19 -24.60 16 11 C 0.17 5.93 2.12 45.02 0.10 6.03 16 12 H 0.07 2.85 7.57 -2.39 -0.02 2.83 16 13 C -0.13 -4.48 5.65 30.67 0.17 -4.31 16 14 C 0.15 5.87 6.52 86.36 0.56 6.44 16 15 N -0.61 -29.01 2.77 -699.10 -1.94 -30.95 16 16 C -0.25 -14.05 10.04 84.03 0.84 -13.21 16 17 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 18 C -0.03 -1.66 5.23 84.86 0.44 -1.22 16 19 N -0.95 -58.78 13.97 21.65 0.30 -58.48 16 20 Si 0.94 46.10 24.35 68.60 1.67 47.77 16 21 H -0.27 -11.99 6.62 99.48 0.66 -11.33 16 22 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 23 H -0.27 -13.09 6.63 99.48 0.66 -12.43 16 24 C 0.10 4.23 3.83 86.36 0.33 4.56 16 25 C 0.10 3.46 3.14 30.67 0.10 3.55 16 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 27 O -0.57 -18.10 13.16 -148.98 -1.96 -20.07 16 28 N -0.28 -6.88 11.67 -48.18 -0.56 -7.45 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 0.03 7.05 -2.39 -0.02 0.02 16 34 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.11 -0.11 8.14 -2.38 -0.02 -0.13 16 36 H 0.22 1.15 7.16 -2.91 -0.02 1.13 16 37 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 38 H 0.41 12.07 8.33 -92.71 -0.77 11.30 16 39 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 2.83 7.93 -2.38 -0.02 2.81 16 43 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.03 1.47 7.07 -2.39 -0.02 1.45 16 45 H 0.07 3.00 4.50 -2.38 -0.01 2.99 16 46 H 0.39 9.46 9.08 -74.06 -0.67 8.79 16 Total: -1.00 -77.08 370.46 -0.19 -77.27 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.53 Total: 25.53 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 6.14 Total: 19.73 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -5.44 Total: -127.13 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -2.03 Total: -43.17 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.67 Total: 47.77 kcal Total: -77.08 -0.19 -77.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090617148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.074 kcal (2) G-P(sol) polarization free energy of solvation -77.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds