Wall clock time and date at job start Fri Apr 10 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46975 * 2 1 4 4 N 1.46494 * 109.47698 * 120.00146 * 2 1 3 5 5 C 1.35043 * 124.88337 * 275.02251 * 4 2 1 6 6 C 1.35370 * 107.22784 * 179.72470 * 5 4 2 7 7 C 1.41504 * 105.49943 * 0.35002 * 6 5 4 8 8 C 1.47717 * 126.51475 * 179.90436 * 7 6 5 9 9 O 1.21570 * 119.99641 * 359.71198 * 8 7 6 10 10 N 1.34772 * 119.99849 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99842 * 179.72675 * 10 8 7 12 12 H 1.09000 * 109.46009 * 324.99237 * 11 10 8 13 13 C 1.53039 * 109.46415 * 84.96957 * 11 10 8 14 14 C 1.53189 * 109.31155 * 181.39869 * 13 11 10 15 15 N 1.46922 * 108.76509 * 305.34162 * 14 13 11 16 16 C 1.36941 * 120.62981 * 233.59552 * 15 14 13 17 17 H 1.08002 * 120.00076 * 27.69270 * 16 15 14 18 18 C 1.38814 * 119.99878 * 207.69412 * 16 15 14 19 19 N 1.31621 * 120.00083 * 17.36503 * 18 16 15 20 20 Si 1.86800 * 119.99973 * 197.36758 * 18 16 15 21 21 H 1.48497 * 109.47219 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47116 * 120.00059 * 20 18 16 23 23 H 1.48507 * 109.47107 * 239.99881 * 20 18 16 24 24 C 1.46924 * 118.74091 * 53.61875 * 15 14 13 25 25 C 1.53048 * 109.45642 * 205.02516 * 11 10 8 26 26 H 1.08994 * 109.50071 * 58.66536 * 25 11 10 27 27 O 1.42896 * 109.49669 * 298.56285 * 25 11 10 28 28 N 1.28463 * 124.88674 * 94.96825 * 4 2 1 29 29 H 1.09007 * 109.46559 * 299.99870 * 1 2 3 30 30 H 1.08999 * 109.47238 * 59.99763 * 1 2 3 31 31 H 1.08995 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47112 * 240.00593 * 2 1 3 33 33 H 1.09002 * 109.46717 * 60.00351 * 3 2 1 34 34 H 1.08998 * 109.46931 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.46908 * 299.99880 * 3 2 1 36 36 H 1.07994 * 126.38499 * 359.95187 * 5 4 2 37 37 H 1.07995 * 127.24768 * 180.26346 * 6 5 4 38 38 H 0.96997 * 120.00022 * 359.72043 * 10 8 7 39 39 H 1.08997 * 109.49409 * 301.33636 * 13 11 10 40 40 H 1.08999 * 109.49575 * 61.42989 * 13 11 10 41 41 H 1.09001 * 109.58332 * 185.56590 * 14 13 11 42 42 H 1.09001 * 109.59918 * 65.13257 * 14 13 11 43 43 H 0.96998 * 119.99807 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.58935 * 186.59642 * 24 15 14 45 45 H 1.09008 * 109.70122 * 66.24840 * 24 15 14 46 46 H 0.96696 * 113.99841 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1845 -0.1152 2.4064 6 6 2.6427 -1.0729 3.2462 7 6 2.7460 -2.2460 2.4616 8 6 3.2050 -3.5729 2.9206 9 8 3.5453 -3.7318 4.0768 10 7 3.2514 -4.6059 2.0563 11 6 3.7123 -5.9204 2.5100 12 1 4.4993 -5.7926 3.2533 13 6 2.5416 -6.6841 3.1332 14 6 3.0349 -8.0437 3.6379 15 7 3.6933 -8.7487 2.5296 16 6 3.3084 -10.0162 2.1823 17 1 2.2963 -10.3436 2.3693 18 6 4.2191 -10.8802 1.5899 19 7 5.5091 -10.6306 1.6669 20 14 3.6138 -12.3972 0.6834 21 1 2.1308 -12.4490 0.7403 22 1 4.0523 -12.3348 -0.7340 23 1 4.1770 -13.6136 1.3226 24 6 4.7728 -8.0682 1.8015 25 6 4.2602 -6.7081 1.3177 26 1 5.0787 -6.1527 0.8599 27 8 3.2203 -6.9044 0.3574 28 7 2.3495 -1.9309 1.2447 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.9852 0.9159 2.6584 37 1 2.8806 -0.9642 4.2940 38 1 2.9796 -4.4791 1.1338 39 1 2.1368 -6.1115 3.9677 40 1 1.7648 -6.8340 2.3835 41 1 2.1879 -8.6310 3.9926 42 1 3.7459 -7.8960 4.4508 43 1 6.1455 -11.2346 1.2532 44 1 5.0726 -8.6716 0.9447 45 1 5.6272 -7.9226 2.4626 46 1 3.4971 -7.3981 -0.4266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090617151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:52 Heat of formation + Delta-G solvation = -9.558987 kcal Electronic energy + Delta-G solvation = -27713.921738 eV Core-core repulsion = 23832.998298 eV Total energy + Delta-G solvation = -3880.923440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.67006 -40.96163 -39.37144 -36.72100 -36.50481 -35.75149 -33.92873 -31.88514 -31.81007 -30.88855 -30.49330 -28.21698 -27.16224 -25.27363 -24.05470 -23.67588 -22.99499 -21.45498 -21.02688 -20.68218 -19.22255 -18.68365 -17.70213 -17.51917 -17.10280 -17.01299 -16.72828 -15.89233 -15.75864 -15.43716 -15.41817 -15.23285 -15.02261 -14.67457 -14.50469 -14.06076 -13.88389 -13.74396 -13.66183 -13.24971 -13.14790 -13.05533 -12.80473 -12.65522 -12.36920 -12.35196 -12.26414 -12.13681 -12.02407 -11.89627 -11.82158 -11.50980 -11.18707 -10.76316 -10.59031 -10.30033 -10.10786 -9.92465 -8.68408 -7.87396 -5.31206 0.53528 1.21169 1.47104 1.50006 1.50395 1.60813 2.15938 2.37130 2.52139 3.24367 3.31661 3.39054 3.62980 3.75589 3.85668 3.88972 3.93947 3.99902 4.07196 4.24644 4.33447 4.37814 4.59385 4.65281 4.67016 4.70663 4.76880 4.78289 4.82936 4.87858 4.89033 4.94492 5.05826 5.16823 5.18448 5.23991 5.35444 5.41652 5.47054 5.55328 5.65642 5.92960 6.37198 6.47342 6.90047 6.94056 7.14509 7.17434 7.82282 8.35903 9.19501 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.002676 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.679460 B =10462.583116 C =11018.852555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 C -0.158 4.158 4 N -0.270 5.270 5 C 0.002 3.998 6 C -0.202 4.202 7 C -0.046 4.046 8 C 0.597 3.403 9 O -0.574 6.574 10 N -0.697 5.697 11 C 0.167 3.833 12 H 0.078 0.922 13 C -0.119 4.119 14 C 0.146 3.854 15 N -0.598 5.598 16 C -0.253 4.253 17 H 0.062 0.938 18 C -0.048 4.048 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.295 1.295 24 C 0.152 3.848 25 C 0.091 3.909 26 H 0.066 0.934 27 O -0.561 6.561 28 N -0.276 5.276 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.224 0.776 37 H 0.163 0.837 38 H 0.413 0.587 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.251 0.749 44 H 0.075 0.925 45 H 0.006 0.994 46 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 27.763 -6.506 29.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.216 4.216 4 N -0.059 5.059 5 C -0.141 4.141 6 C -0.230 4.230 7 C -0.205 4.205 8 C 0.383 3.617 9 O -0.452 6.452 10 N -0.346 5.346 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.160 4.160 14 C 0.020 3.980 15 N -0.321 5.321 16 C -0.383 4.383 17 H 0.080 0.920 18 C -0.243 4.243 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.222 1.222 24 C 0.025 3.975 25 C 0.030 3.970 26 H 0.084 0.916 27 O -0.368 6.368 28 N -0.114 5.114 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.240 0.760 37 H 0.181 0.819 38 H 0.250 0.750 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.024 0.976 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.594 27.472 -6.488 29.507 hybrid contribution 0.497 -1.313 -0.130 1.410 sum -8.098 26.159 -6.617 28.172 Atomic orbital electron populations 1.22223 0.91831 1.02781 1.05056 1.22022 0.96310 0.94548 0.83999 1.22215 1.02047 0.91529 1.05832 1.46250 1.43695 1.05084 1.10906 1.23298 1.04523 1.01897 0.84359 1.21993 1.08001 0.91095 1.01944 1.21795 1.10627 0.95797 0.92239 1.17337 0.76851 0.82804 0.84709 1.90748 1.50909 1.84488 1.19028 1.45882 1.65750 1.08809 1.14207 1.20799 0.96721 0.80891 0.95304 0.90409 1.22081 0.97871 0.96302 0.99704 1.20967 0.95642 0.91849 0.89576 1.44110 1.40591 1.13407 1.33989 1.19461 0.94163 0.89336 1.35351 0.92046 1.25711 0.95044 1.00412 1.03131 1.70174 1.00869 1.39521 1.47647 0.85198 0.77916 0.79119 0.78100 1.19595 1.21214 1.22242 1.21310 0.89007 0.90586 0.96618 1.22511 0.89520 0.95997 0.88976 0.91605 1.86337 1.38610 1.78556 1.33310 1.73461 1.16578 0.99622 1.21702 0.90981 0.87433 0.93598 0.87488 0.89791 0.91992 0.87363 0.75997 0.81941 0.75036 0.92404 0.91936 0.92374 0.96720 0.93982 0.90715 0.97551 0.76509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.52 71.98 0.69 -0.53 16 2 C 0.13 1.24 3.80 45.00 0.17 1.41 16 3 C -0.16 -0.51 8.81 71.99 0.63 0.12 16 4 N -0.27 -4.80 3.22 -327.37 -1.05 -5.86 16 5 C 0.00 0.03 10.54 83.54 0.88 0.91 16 6 C -0.20 -4.79 10.81 22.41 0.24 -4.55 16 7 C -0.05 -1.38 7.13 42.46 0.30 -1.08 16 8 C 0.60 21.40 7.79 86.75 0.68 22.08 16 9 O -0.57 -23.97 16.59 -3.94 -0.07 -24.04 16 10 N -0.70 -24.04 5.05 -445.39 -2.25 -26.29 16 11 C 0.17 6.46 2.20 45.02 0.10 6.56 16 12 H 0.08 3.25 7.58 -2.39 -0.02 3.23 16 13 C -0.12 -4.85 5.51 30.67 0.17 -4.68 16 14 C 0.15 6.67 6.52 86.36 0.56 7.23 16 15 N -0.60 -30.74 2.94 -699.09 -2.05 -32.80 16 16 C -0.25 -14.06 9.59 84.03 0.81 -13.25 16 17 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 18 C -0.05 -2.66 4.91 84.86 0.42 -2.24 16 19 N -0.94 -54.53 11.19 21.65 0.24 -54.29 16 20 Si 0.97 44.78 29.59 68.60 2.03 46.81 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 24 C 0.15 7.24 4.95 86.36 0.43 7.67 16 25 C 0.09 3.49 3.38 30.67 0.10 3.59 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 O -0.56 -20.55 12.08 -148.98 -1.80 -22.35 16 28 N -0.28 -7.20 11.67 -48.17 -0.56 -7.76 16 29 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 0.06 7.05 -2.39 -0.02 0.04 16 34 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.22 1.26 7.16 -2.91 -0.02 1.24 16 37 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 38 H 0.41 13.32 7.98 -92.71 -0.74 12.58 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 2.64 7.61 -2.39 -0.02 2.62 16 41 H 0.06 2.59 7.93 -2.39 -0.02 2.58 16 42 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 44 H 0.07 3.88 6.04 -2.39 -0.01 3.87 16 45 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 46 H 0.39 12.12 9.08 -74.06 -0.67 11.45 16 Total: -1.00 -74.32 375.19 0.26 -74.06 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.41 Total: 29.25 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 6.18 Total: 23.26 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -5.67 Total: -126.99 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -1.87 Total: -46.39 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -74.32 0.26 -74.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090617151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.502 kcal (2) G-P(sol) polarization free energy of solvation -74.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds