Wall clock time and date at job start Fri Apr 10 2020 18:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47262 * 2 1 4 4 N 1.46496 * 109.47140 * 120.00353 * 2 1 3 5 5 C 1.34257 * 125.75238 * 274.97531 * 4 2 1 6 6 C 1.38047 * 107.42151 * 179.97438 * 5 4 2 7 7 C 1.47418 * 126.42039 * 180.02562 * 6 5 4 8 8 O 1.21606 * 120.00285 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00268 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00110 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.45781 * 35.00108 * 10 9 7 12 12 C 1.53039 * 109.45880 * 275.02951 * 10 9 7 13 13 C 1.53193 * 109.31204 * 178.61614 * 12 10 9 14 14 N 1.46924 * 108.77618 * 54.63003 * 13 12 10 15 15 C 1.36942 * 120.62856 * 126.36843 * 14 13 12 16 16 H 1.07995 * 120.00457 * 331.83356 * 15 14 13 17 17 C 1.38814 * 119.99850 * 151.83591 * 15 14 13 18 18 N 1.31619 * 119.99953 * 343.08325 * 17 15 14 19 19 Si 1.86794 * 119.99995 * 163.08903 * 17 15 14 20 20 H 1.48497 * 109.47675 * 89.99903 * 19 17 15 21 21 H 1.48508 * 109.46948 * 209.99600 * 19 17 15 22 22 H 1.48501 * 109.47199 * 329.99551 * 19 17 15 23 23 C 1.46924 * 118.74374 * 306.39791 * 14 13 12 24 24 C 1.53041 * 109.45635 * 154.97304 * 10 9 7 25 25 H 1.09003 * 109.49585 * 61.43785 * 24 10 9 26 26 O 1.42894 * 109.49685 * 301.33544 * 24 10 9 27 27 C 1.41301 * 107.16276 * 0.02562 * 6 5 4 28 28 N 1.30440 * 108.02371 * 359.97438 * 27 6 5 29 29 H 1.09009 * 109.47021 * 59.99531 * 1 2 3 30 30 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46918 * 300.00092 * 1 2 3 32 32 H 1.09006 * 109.47068 * 240.00477 * 2 1 3 33 33 H 1.09000 * 109.47324 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47509 * 300.00187 * 3 2 1 35 35 H 1.08997 * 109.47229 * 60.00099 * 3 2 1 36 36 H 1.08005 * 126.29541 * 359.97438 * 5 4 2 37 37 H 0.96997 * 119.99490 * 0.02562 * 9 7 6 38 38 H 1.09007 * 109.49728 * 298.56747 * 12 10 9 39 39 H 1.08994 * 109.50221 * 58.62985 * 12 10 9 40 40 H 1.08999 * 109.58948 * 174.42137 * 13 12 10 41 41 H 1.08999 * 109.58572 * 294.84471 * 13 12 10 42 42 H 0.97004 * 120.00415 * 180.02562 * 18 17 15 43 43 H 1.08991 * 109.58929 * 173.39493 * 23 14 13 44 44 H 1.09002 * 109.58230 * 293.82181 * 23 14 13 45 45 H 0.96704 * 113.99622 * 179.97438 * 26 24 10 46 46 H 1.08003 * 125.98088 * 180.26531 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1907 -0.1362 2.4066 6 6 2.6625 -1.1225 3.2495 7 6 2.9935 -0.9685 4.6778 8 8 2.8577 0.1112 5.2205 9 7 3.4467 -2.0245 5.3822 10 6 3.7751 -1.8716 6.8017 11 1 3.0848 -1.1634 7.2599 12 6 5.2072 -1.3501 6.9404 13 6 5.5352 -1.1586 8.4245 14 7 5.2817 -2.4214 9.1315 15 6 6.2550 -2.9954 9.9051 16 1 7.2967 -2.8284 9.6744 17 6 5.9026 -3.7920 10.9859 18 7 4.6816 -3.7363 11.4742 19 14 7.1613 -4.9430 11.7476 20 1 7.8923 -4.2325 12.8274 21 1 6.4690 -6.1279 12.3152 22 1 8.1233 -5.3837 10.7057 23 6 3.9643 -3.0569 8.9924 24 6 3.6542 -3.2271 7.5018 25 1 4.3621 -3.9288 7.0606 26 8 2.3250 -3.7277 7.3455 27 6 2.7686 -2.3072 2.4868 28 7 2.3835 -2.0395 1.2696 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.9961 0.8924 2.6723 37 1 3.5553 -2.8856 4.9492 38 1 5.9003 -2.0697 6.5045 39 1 5.2989 -0.3962 6.4211 40 1 6.5839 -0.8825 8.5343 41 1 4.9032 -0.3739 8.8401 42 1 4.4354 -4.2926 12.2297 43 1 3.9765 -4.0331 9.4768 44 1 3.2041 -2.4269 9.4543 45 1 2.1762 -4.5862 7.7651 46 1 3.1048 -3.2674 2.8495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090720952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:15 Heat of formation + Delta-G solvation = 8.137910 kcal Electronic energy + Delta-G solvation = -27486.651343 eV Core-core repulsion = 23606.495298 eV Total energy + Delta-G solvation = -3880.156045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56862 -39.35778 -37.66906 -36.10905 -35.21732 -34.21239 -32.16576 -30.63980 -30.47666 -29.18189 -28.73021 -27.84885 -25.34350 -23.80547 -22.58635 -22.13620 -21.56962 -20.17088 -19.95560 -19.41660 -17.96669 -16.88358 -16.53584 -15.87197 -15.77852 -15.74858 -15.22199 -14.81461 -14.56337 -14.23020 -13.99198 -13.73326 -13.50353 -13.36819 -13.15948 -13.11946 -12.73301 -12.65987 -12.55234 -12.14098 -11.94948 -11.87055 -11.72345 -11.62301 -11.20053 -11.13413 -10.80861 -10.73764 -10.35523 -10.18874 -9.98109 -9.76533 -9.75681 -9.47302 -9.28470 -8.87026 -8.59695 -8.44850 -6.74222 -5.84689 -3.28226 1.46890 2.07095 2.12778 3.34165 3.41710 3.43696 3.55823 3.68184 4.02065 4.33386 4.43591 4.51370 4.54065 4.59947 4.68591 4.94668 5.01207 5.12124 5.17850 5.24840 5.32201 5.33105 5.45313 5.50887 5.56277 5.61099 5.66256 5.70354 5.97322 6.07013 6.14677 6.27689 6.31168 6.51809 6.55962 6.65956 6.75488 6.95214 6.97300 7.16232 7.39262 7.49586 7.74407 7.91184 8.15089 8.39198 8.60715 9.14028 9.76961 10.33573 11.23765 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.032534 B = 0.002457 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.419282 B =11394.718486 C =11610.357502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.358 5.358 5 C 0.125 3.875 6 C -0.286 4.286 7 C 0.592 3.408 8 O -0.556 6.556 9 N -0.711 5.711 10 C 0.165 3.835 11 H 0.088 0.912 12 C -0.139 4.139 13 C 0.145 3.855 14 N -0.589 5.589 15 C -0.254 4.254 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.148 3.852 24 C 0.072 3.928 25 H 0.051 0.949 26 O -0.572 6.572 27 C 0.081 3.919 28 N -0.300 5.300 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.184 0.816 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.024 0.976 42 H 0.255 0.745 43 H 0.093 0.907 44 H 0.030 0.970 45 H 0.375 0.625 46 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 5.176 -22.792 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.051 3.949 3 C -0.226 4.226 4 N -0.138 5.138 5 C -0.026 4.026 6 C -0.301 4.301 7 C 0.379 3.621 8 O -0.435 6.435 9 N -0.359 5.359 10 C 0.061 3.939 11 H 0.106 0.894 12 C -0.179 4.179 13 C 0.018 3.982 14 N -0.313 5.313 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.021 3.979 24 C 0.011 3.989 25 H 0.069 0.931 26 O -0.377 6.377 27 C -0.106 4.106 28 N -0.120 5.120 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.201 0.799 37 H 0.228 0.772 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.048 0.952 45 H 0.222 0.778 46 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.216 6.003 -23.886 25.664 hybrid contribution 0.830 -1.302 1.413 2.093 sum -6.386 4.700 -22.473 23.831 Atomic orbital electron populations 1.22259 0.93265 1.03545 1.03381 1.21379 0.95087 0.92899 0.85575 1.22247 1.02585 0.93774 1.04044 1.48738 1.49059 1.07532 1.08483 1.22846 0.95656 0.99609 0.84518 1.20375 1.19124 0.94524 0.96079 1.17209 0.76336 0.84091 0.84461 1.90755 1.54970 1.26475 1.71289 1.45850 1.66551 1.12149 1.11366 1.20957 0.96987 0.97010 0.78974 0.89431 1.22415 0.94977 1.00556 0.99985 1.20946 0.99099 0.89059 0.89091 1.44007 1.11955 1.20759 1.54614 1.19189 0.87839 1.25837 1.05526 0.91434 1.25086 0.96746 1.01769 0.96063 1.70028 1.18665 1.40851 1.25079 0.86293 0.80746 0.80576 0.79134 1.21304 1.21541 1.20446 1.21413 0.86965 1.00480 0.89002 1.22979 0.82754 0.93375 0.99786 0.93066 1.86427 1.31127 1.40551 1.79554 1.24071 0.97321 0.98920 0.90325 1.77135 1.21239 0.92873 1.20724 0.90242 0.91445 0.91616 0.87643 0.91236 0.89690 0.91166 0.79875 0.77166 0.92058 0.91778 0.92168 0.95836 0.93510 0.88897 0.95238 0.77841 0.79450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 9.52 37.16 0.35 -0.56 16 2 C 0.15 0.99 3.91 -67.93 -0.27 0.72 16 3 C -0.17 -0.78 8.82 37.16 0.33 -0.46 16 4 N -0.36 -3.65 3.50 -54.31 -0.19 -3.84 16 5 C 0.12 1.41 10.39 -16.56 -0.17 1.24 16 6 C -0.29 -3.81 6.13 -105.07 -0.64 -4.46 16 7 C 0.59 9.68 7.78 -12.52 -0.10 9.58 16 8 O -0.56 -10.95 16.56 5.27 0.09 -10.86 16 9 N -0.71 -11.09 4.91 -54.84 -0.27 -11.36 16 10 C 0.16 3.03 2.12 -67.89 -0.14 2.89 16 11 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 12 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 13 C 0.14 3.08 6.52 -3.71 -0.02 3.06 16 14 N -0.59 -14.49 2.99 -172.32 -0.52 -15.00 16 15 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 16 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 17 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -25.58 11.20 55.49 0.62 -24.96 16 19 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.15 3.44 4.93 -3.71 -0.02 3.43 16 24 C 0.07 1.35 3.14 -26.61 -0.08 1.27 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 O -0.57 -9.86 13.16 -35.23 -0.46 -10.33 16 27 C 0.08 0.95 11.50 -16.98 -0.20 0.75 16 28 N -0.30 -3.61 12.50 30.86 0.39 -3.23 16 29 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.33 7.13 -51.93 -0.37 -0.04 16 36 H 0.18 1.75 7.23 -52.48 -0.38 1.37 16 37 H 0.39 5.18 7.56 -40.82 -0.31 4.87 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.37 5.17 9.08 45.56 0.41 5.59 16 46 H 0.19 1.67 7.50 -52.48 -0.39 1.28 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -33.82 376.46 -7.40 -41.22 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.36 Total: 8.79 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -1.34 Total: 7.77 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.03 Total: -58.39 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.38 Total: -21.19 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.82 -7.40 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090720952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.359 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds