Wall clock time and date at job start Fri Apr 10 2020 18:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47262 * 2 1 4 4 N 1.46496 * 109.47140 * 120.00353 * 2 1 3 5 5 C 1.34257 * 125.75238 * 274.97531 * 4 2 1 6 6 C 1.38047 * 107.42151 * 179.97438 * 5 4 2 7 7 C 1.47418 * 126.42039 * 180.02562 * 6 5 4 8 8 O 1.21606 * 120.00285 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00268 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00110 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.45781 * 35.00108 * 10 9 7 12 12 C 1.53039 * 109.45880 * 275.02951 * 10 9 7 13 13 C 1.53193 * 109.31204 * 178.61614 * 12 10 9 14 14 N 1.46924 * 108.77618 * 54.63003 * 13 12 10 15 15 C 1.36942 * 120.62856 * 126.36843 * 14 13 12 16 16 H 1.07995 * 120.00457 * 331.83356 * 15 14 13 17 17 C 1.38814 * 119.99850 * 151.83591 * 15 14 13 18 18 N 1.31619 * 119.99953 * 343.08325 * 17 15 14 19 19 Si 1.86794 * 119.99995 * 163.08903 * 17 15 14 20 20 H 1.48497 * 109.47675 * 89.99903 * 19 17 15 21 21 H 1.48508 * 109.46948 * 209.99600 * 19 17 15 22 22 H 1.48501 * 109.47199 * 329.99551 * 19 17 15 23 23 C 1.46924 * 118.74374 * 306.39791 * 14 13 12 24 24 C 1.53041 * 109.45635 * 154.97304 * 10 9 7 25 25 H 1.09003 * 109.49585 * 61.43785 * 24 10 9 26 26 O 1.42894 * 109.49685 * 301.33544 * 24 10 9 27 27 C 1.41301 * 107.16276 * 0.02562 * 6 5 4 28 28 N 1.30440 * 108.02371 * 359.97438 * 27 6 5 29 29 H 1.09009 * 109.47021 * 59.99531 * 1 2 3 30 30 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46918 * 300.00092 * 1 2 3 32 32 H 1.09006 * 109.47068 * 240.00477 * 2 1 3 33 33 H 1.09000 * 109.47324 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47509 * 300.00187 * 3 2 1 35 35 H 1.08997 * 109.47229 * 60.00099 * 3 2 1 36 36 H 1.08005 * 126.29541 * 359.97438 * 5 4 2 37 37 H 0.96997 * 119.99490 * 0.02562 * 9 7 6 38 38 H 1.09007 * 109.49728 * 298.56747 * 12 10 9 39 39 H 1.08994 * 109.50221 * 58.62985 * 12 10 9 40 40 H 1.08999 * 109.58948 * 174.42137 * 13 12 10 41 41 H 1.08999 * 109.58572 * 294.84471 * 13 12 10 42 42 H 0.97004 * 120.00415 * 180.02562 * 18 17 15 43 43 H 1.08991 * 109.58929 * 173.39493 * 23 14 13 44 44 H 1.09002 * 109.58230 * 293.82181 * 23 14 13 45 45 H 0.96704 * 113.99622 * 179.97438 * 26 24 10 46 46 H 1.08003 * 125.98088 * 180.26531 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1907 -0.1362 2.4066 6 6 2.6625 -1.1225 3.2495 7 6 2.9935 -0.9685 4.6778 8 8 2.8577 0.1112 5.2205 9 7 3.4467 -2.0245 5.3822 10 6 3.7751 -1.8716 6.8017 11 1 3.0848 -1.1634 7.2599 12 6 5.2072 -1.3501 6.9404 13 6 5.5352 -1.1586 8.4245 14 7 5.2817 -2.4214 9.1315 15 6 6.2550 -2.9954 9.9051 16 1 7.2967 -2.8284 9.6744 17 6 5.9026 -3.7920 10.9859 18 7 4.6816 -3.7363 11.4742 19 14 7.1613 -4.9430 11.7476 20 1 7.8923 -4.2325 12.8274 21 1 6.4690 -6.1279 12.3152 22 1 8.1233 -5.3837 10.7057 23 6 3.9643 -3.0569 8.9924 24 6 3.6542 -3.2271 7.5018 25 1 4.3621 -3.9288 7.0606 26 8 2.3250 -3.7277 7.3455 27 6 2.7686 -2.3072 2.4868 28 7 2.3835 -2.0395 1.2696 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.9961 0.8924 2.6723 37 1 3.5553 -2.8856 4.9492 38 1 5.9003 -2.0697 6.5045 39 1 5.2989 -0.3962 6.4211 40 1 6.5839 -0.8825 8.5343 41 1 4.9032 -0.3739 8.8401 42 1 4.4354 -4.2926 12.2297 43 1 3.9765 -4.0331 9.4768 44 1 3.2041 -2.4269 9.4543 45 1 2.1762 -4.5862 7.7651 46 1 3.1048 -3.2674 2.8495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090720952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:14 Heat of formation + Delta-G solvation = -17.252302 kcal Electronic energy + Delta-G solvation = -27487.752345 eV Core-core repulsion = 23606.495298 eV Total energy + Delta-G solvation = -3881.257047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44988 -40.75307 -39.18344 -36.86048 -36.71949 -35.73808 -33.93379 -31.76686 -31.45451 -30.71306 -30.28492 -28.25276 -27.09328 -24.98699 -23.94175 -23.40245 -23.02961 -21.28590 -20.98163 -20.83194 -19.18412 -18.54753 -18.07407 -17.28712 -16.88962 -16.61538 -16.50554 -16.00651 -15.63405 -15.57083 -15.47274 -15.07071 -14.91395 -14.82770 -14.37463 -13.91119 -13.82006 -13.78526 -13.47833 -13.33266 -13.20516 -13.09733 -13.01875 -12.63850 -12.51732 -12.39809 -12.33062 -12.05826 -12.00610 -11.95929 -11.84884 -11.33814 -10.98447 -10.79618 -10.58440 -10.58254 -10.07895 -9.62595 -8.73715 -7.89055 -5.36383 0.53942 1.16887 1.34506 1.49481 1.51100 1.60942 2.30315 2.50527 2.51355 3.14860 3.28766 3.42047 3.66303 3.75650 3.84574 3.89886 3.97089 4.06457 4.10887 4.13909 4.34463 4.35660 4.45762 4.49086 4.61453 4.65388 4.71769 4.77088 4.79968 4.87313 4.95198 5.00183 5.07548 5.15340 5.18988 5.19673 5.36032 5.41282 5.56015 5.59739 5.65626 5.89837 6.35347 6.50914 6.70816 6.86056 7.11982 7.36082 7.79457 8.32856 9.17747 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.032534 B = 0.002457 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.419282 B =11394.718486 C =11610.357502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 C -0.164 4.164 4 N -0.351 5.351 5 C 0.132 3.868 6 C -0.312 4.312 7 C 0.592 3.408 8 O -0.596 6.596 9 N -0.700 5.700 10 C 0.173 3.827 11 H 0.055 0.945 12 C -0.122 4.122 13 C 0.142 3.858 14 N -0.605 5.605 15 C -0.265 4.265 16 H 0.072 0.928 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.970 3.030 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.267 1.267 23 C 0.157 3.843 24 C 0.093 3.907 25 H 0.067 0.933 26 O -0.573 6.573 27 C 0.086 3.914 28 N -0.319 5.319 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.199 0.801 37 H 0.410 0.590 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.009 0.991 42 H 0.252 0.748 43 H 0.071 0.929 44 H -0.005 1.005 45 H 0.391 0.609 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 4.808 -25.336 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 C -0.222 4.222 4 N -0.129 5.129 5 C -0.021 4.021 6 C -0.327 4.327 7 C 0.382 3.618 8 O -0.478 6.478 9 N -0.350 5.350 10 C 0.067 3.933 11 H 0.073 0.927 12 C -0.162 4.162 13 C 0.016 3.984 14 N -0.329 5.329 15 C -0.394 4.394 16 H 0.090 0.910 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.798 3.202 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.192 1.192 23 C 0.030 3.970 24 C 0.032 3.968 25 H 0.085 0.915 26 O -0.380 6.380 27 C -0.102 4.102 28 N -0.139 5.139 29 H 0.125 0.875 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.080 0.920 34 H 0.129 0.871 35 H 0.089 0.911 36 H 0.215 0.785 37 H 0.246 0.754 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.027 0.973 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.013 0.987 45 H 0.241 0.759 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.781 5.607 -26.496 27.918 hybrid contribution 0.617 -1.098 2.143 2.486 sum -6.164 4.509 -24.352 25.522 Atomic orbital electron populations 1.22240 0.92323 1.02878 1.04495 1.21785 0.95810 0.93752 0.84388 1.22258 1.02058 0.92546 1.05345 1.49107 1.47765 1.07028 1.09049 1.23090 0.94329 0.99971 0.84681 1.20190 1.21693 0.96148 0.94699 1.17592 0.75378 0.83354 0.85508 1.90731 1.56752 1.27979 1.72352 1.45606 1.66384 1.12974 1.10006 1.20628 0.96247 0.95862 0.80531 0.92681 1.22205 0.95121 1.01276 0.97648 1.21043 0.99234 0.87499 0.90650 1.44255 1.11900 1.21965 1.54809 1.19538 0.88553 1.25685 1.05666 0.90989 1.25851 0.98525 1.03325 0.96735 1.70188 1.20532 1.41745 1.25629 0.85249 0.78507 0.78256 0.78235 1.21433 1.21804 1.19197 1.21224 0.85730 0.98289 0.91761 1.22556 0.83775 0.94028 0.96480 0.91481 1.86407 1.30165 1.41870 1.79539 1.24406 0.96587 0.99332 0.89838 1.77108 1.21831 0.93997 1.20937 0.87529 0.92950 0.92110 0.86940 0.92018 0.87140 0.91143 0.78466 0.75398 0.90707 0.91125 0.91466 0.97326 0.93932 0.91085 0.98739 0.75930 0.77219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.52 71.98 0.69 -0.75 16 2 C 0.14 1.54 3.91 44.99 0.18 1.72 16 3 C -0.16 -1.12 8.82 71.98 0.64 -0.49 16 4 N -0.35 -6.53 3.50 -325.74 -1.14 -7.67 16 5 C 0.13 2.82 10.39 84.28 0.88 3.70 16 6 C -0.31 -7.95 6.13 -20.15 -0.12 -8.07 16 7 C 0.59 19.00 7.78 86.66 0.67 19.67 16 8 O -0.60 -23.62 16.56 -4.05 -0.07 -23.69 16 9 N -0.70 -21.06 4.91 -445.68 -2.19 -23.25 16 10 C 0.17 6.31 2.12 45.02 0.10 6.41 16 11 H 0.05 2.40 7.58 -2.39 -0.02 2.39 16 12 C -0.12 -4.40 5.65 30.67 0.17 -4.23 16 13 C 0.14 6.08 6.52 86.36 0.56 6.64 16 14 N -0.60 -30.10 2.99 -699.11 -2.09 -32.19 16 15 C -0.26 -14.18 9.58 84.03 0.81 -13.38 16 16 H 0.07 3.73 7.88 -2.91 -0.02 3.70 16 17 C -0.05 -2.66 4.92 84.86 0.42 -2.24 16 18 N -0.94 -54.24 11.20 21.65 0.24 -54.00 16 19 Si 0.97 43.55 29.59 68.60 2.03 45.58 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 C 0.16 7.46 4.93 86.36 0.43 7.89 16 24 C 0.09 3.43 3.14 30.67 0.10 3.53 16 25 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 26 O -0.57 -19.26 13.16 -148.98 -1.96 -21.22 16 27 C 0.09 1.85 11.50 85.65 0.99 2.83 16 28 N -0.32 -7.13 12.50 -56.27 -0.70 -7.83 16 29 H 0.11 0.37 8.14 -2.38 -0.02 0.36 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.07 0.50 7.13 -2.39 -0.02 0.48 16 36 H 0.20 3.51 7.23 -2.91 -0.02 3.49 16 37 H 0.41 9.88 7.56 -92.71 -0.70 9.18 16 38 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 41 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 43 H 0.07 3.68 6.06 -2.39 -0.01 3.66 16 44 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.39 10.37 9.08 -74.05 -0.67 9.70 16 46 H 0.21 3.23 7.50 -2.91 -0.02 3.20 16 Total: -1.00 -74.00 376.46 0.23 -73.76 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.37 Total: 27.29 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 6.48 Total: 23.23 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -5.88 Total: -124.95 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -2.03 Total: -44.91 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -74.00 0.23 -73.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090720952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.510 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds