Wall clock time and date at job start Fri Apr 10 2020 18:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47330 * 2 1 4 4 N 1.46502 * 109.46696 * 119.99756 * 2 1 3 5 5 C 1.34254 * 125.75754 * 274.99684 * 4 2 1 6 6 C 1.38038 * 107.42040 * 179.97438 * 5 4 2 7 7 C 1.47427 * 126.41476 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00306 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99729 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99930 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.46067 * 325.00093 * 10 9 7 12 12 C 1.53045 * 109.46126 * 84.97109 * 10 9 7 13 13 C 1.53186 * 109.31087 * 181.38499 * 12 10 9 14 14 N 1.46924 * 108.77969 * 305.36557 * 13 12 10 15 15 C 1.36939 * 120.63171 * 233.58906 * 14 13 12 16 16 H 1.08002 * 119.99715 * 151.83473 * 15 14 13 17 17 C 1.38805 * 119.99792 * 331.83057 * 15 14 13 18 18 N 1.31619 * 120.00310 * 343.08024 * 17 15 14 19 19 Si 1.86806 * 119.99520 * 163.07393 * 17 15 14 20 20 H 1.48497 * 109.47469 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46849 * 120.00560 * 19 17 15 22 22 H 1.48500 * 109.47274 * 239.99913 * 19 17 15 23 23 C 1.46923 * 118.73524 * 53.61179 * 14 13 12 24 24 C 1.53043 * 109.46180 * 205.03039 * 10 9 7 25 25 H 1.09002 * 109.49674 * 298.56458 * 24 10 9 26 26 O 1.42896 * 109.49783 * 58.66185 * 24 10 9 27 27 C 1.41292 * 107.17149 * 0.22219 * 6 5 4 28 28 N 1.30447 * 108.01989 * 359.62328 * 27 6 5 29 29 H 1.08997 * 109.47050 * 300.00415 * 1 2 3 30 30 H 1.09003 * 109.46972 * 60.00069 * 1 2 3 31 31 H 1.09000 * 109.47448 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47050 * 239.99585 * 2 1 3 33 33 H 1.08991 * 109.47461 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47036 * 299.99891 * 3 2 1 35 35 H 1.09001 * 109.47109 * 59.99363 * 3 2 1 36 36 H 1.08000 * 126.28848 * 0.02562 * 5 4 2 37 37 H 0.96994 * 120.00356 * 0.27703 * 9 7 6 38 38 H 1.08993 * 109.49708 * 301.34112 * 12 10 9 39 39 H 1.09003 * 109.49413 * 61.43573 * 12 10 9 40 40 H 1.09002 * 109.58479 * 65.15821 * 13 12 10 41 41 H 1.09005 * 109.58385 * 185.58176 * 13 12 10 42 42 H 0.96999 * 119.99443 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.59123 * 66.18069 * 23 14 13 44 44 H 1.09000 * 109.58740 * 186.45986 * 23 14 13 45 45 H 0.96693 * 114.00201 * 180.02562 * 26 24 10 46 46 H 1.07997 * 125.98912 * 179.73828 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1903 -0.1363 2.4069 6 6 2.6620 -1.1224 3.2497 7 6 2.9937 -0.9682 4.6778 8 8 2.8576 0.1115 5.2206 9 7 3.4468 -2.0241 5.3823 10 6 3.7770 -1.8708 6.8014 11 1 4.1953 -0.8787 6.9717 12 6 2.5088 -2.0403 7.6411 13 6 2.8515 -1.8451 9.1213 14 7 3.9401 -2.7643 9.4800 15 6 3.8095 -3.6202 10.5409 16 1 4.3443 -4.5586 10.5467 17 6 2.9899 -3.2818 11.6089 18 7 2.6063 -2.0337 11.7744 19 14 2.4314 -4.5980 12.8111 20 1 2.9966 -5.9102 12.4065 21 1 2.9054 -4.2549 14.1760 22 1 0.9484 -4.6749 12.8070 23 6 5.1717 -2.7472 8.6791 24 6 4.8029 -2.9327 7.2039 25 1 4.3761 -3.9249 7.0573 26 8 5.9749 -2.7931 6.3983 27 6 2.7730 -2.3059 2.4859 28 7 2.3835 -2.0395 1.2699 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.9946 0.8921 2.6727 37 1 3.5586 -2.8845 4.9486 38 1 1.7698 -1.2988 7.3378 39 1 2.1038 -3.0411 7.4904 40 1 3.1711 -0.8167 9.2898 41 1 1.9744 -2.0619 9.7311 42 1 2.0332 -1.7974 12.5205 43 1 5.6807 -1.7924 8.8115 44 1 5.8268 -3.5577 8.9988 45 1 6.6690 -3.4357 6.5990 46 1 3.1180 -3.2638 2.8463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090720956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:26 Heat of formation + Delta-G solvation = 8.767169 kcal Electronic energy + Delta-G solvation = -27475.617601 eV Core-core repulsion = 23595.488843 eV Total energy + Delta-G solvation = -3880.128759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55826 -39.36317 -37.72070 -36.09904 -35.35704 -34.18122 -31.96317 -30.63914 -30.56927 -29.56607 -28.42078 -27.83565 -25.33611 -23.78713 -22.54961 -22.17582 -21.59500 -20.16081 -19.95385 -19.43605 -17.95535 -17.02348 -16.50763 -15.90749 -15.78071 -15.67653 -15.20441 -14.82677 -14.52296 -14.25944 -14.00531 -13.85685 -13.50259 -13.31510 -13.18425 -13.02628 -12.78487 -12.66766 -12.59169 -12.21279 -12.00971 -11.87935 -11.71634 -11.51706 -11.16131 -11.07233 -10.87200 -10.60667 -10.27004 -10.21747 -9.92489 -9.74932 -9.73344 -9.65298 -9.35648 -8.85649 -8.60028 -8.37428 -6.73766 -5.82562 -3.26968 1.48257 2.08083 2.13653 3.35369 3.43315 3.45217 3.56331 3.69974 4.03056 4.34532 4.40512 4.52488 4.54453 4.56755 4.65006 4.95886 5.02257 5.13375 5.19169 5.25873 5.33810 5.34397 5.37027 5.52351 5.57538 5.61650 5.62273 5.69319 5.82897 6.03718 6.18241 6.28648 6.40587 6.53105 6.61213 6.67008 6.73185 6.82082 6.98491 7.33664 7.40072 7.64604 7.75691 7.91600 7.97427 8.40537 8.62708 9.15836 9.78231 10.34438 11.25948 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024230 B = 0.002557 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.308839 B =10946.061876 C =11340.263852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.358 5.358 5 C 0.125 3.875 6 C -0.286 4.286 7 C 0.592 3.408 8 O -0.553 6.553 9 N -0.712 5.712 10 C 0.165 3.835 11 H 0.087 0.913 12 C -0.146 4.146 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.258 4.258 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.899 5.899 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.288 1.288 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.056 0.944 26 O -0.570 6.570 27 C 0.081 3.919 28 N -0.301 5.301 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.184 0.816 37 H 0.394 0.606 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.024 0.976 41 H 0.092 0.908 42 H 0.255 0.745 43 H 0.029 0.971 44 H 0.059 0.941 45 H 0.373 0.627 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.335 2.384 -23.732 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.051 3.949 3 C -0.227 4.227 4 N -0.138 5.138 5 C -0.026 4.026 6 C -0.301 4.301 7 C 0.379 3.621 8 O -0.432 6.432 9 N -0.360 5.360 10 C 0.061 3.939 11 H 0.105 0.895 12 C -0.187 4.187 13 C 0.045 3.955 14 N -0.313 5.313 15 C -0.387 4.387 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.542 5.542 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.215 1.215 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.074 0.926 26 O -0.375 6.375 27 C -0.107 4.107 28 N -0.120 5.120 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.201 0.799 37 H 0.227 0.773 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.078 0.922 45 H 0.219 0.781 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.112 3.301 -24.761 25.070 hybrid contribution 0.172 -1.215 1.548 1.975 sum -1.940 2.086 -23.213 23.387 Atomic orbital electron populations 1.22261 0.93263 1.03535 1.03397 1.21378 0.95088 0.92903 0.85557 1.22246 1.02586 0.93772 1.04057 1.48737 1.49104 1.07493 1.08484 1.22849 0.95651 0.99617 0.84486 1.20372 1.19027 0.94579 0.96082 1.17201 0.76581 0.83992 0.84359 1.90767 1.54608 1.26465 1.71375 1.45833 1.66597 1.12262 1.11332 1.20974 0.94514 0.99767 0.78616 0.89450 1.22600 0.95797 1.01273 0.98982 1.20830 0.93223 0.92343 0.89091 1.44053 1.10630 1.44176 1.32392 1.19194 1.27056 0.96949 0.95504 0.91531 1.25081 1.01803 0.95739 0.96849 1.70047 1.37944 1.15359 1.30898 0.86217 0.78397 0.81281 0.80805 1.20234 1.21672 1.21477 1.21529 0.90612 0.99646 0.88908 1.22775 0.85109 0.97519 0.92692 0.92614 1.86492 1.28119 1.60476 1.62367 1.24056 0.97309 0.98938 0.90360 1.77133 1.21216 0.92917 1.20743 0.91602 0.90242 0.91455 0.87657 0.91237 0.89696 0.91141 0.79856 0.77264 0.91890 0.92384 0.95810 0.88958 0.93512 0.95336 0.92211 0.78092 0.79485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 9.52 37.16 0.35 -0.59 16 2 C 0.15 1.01 3.91 -67.93 -0.27 0.74 16 3 C -0.17 -0.82 8.82 37.15 0.33 -0.49 16 4 N -0.36 -3.69 3.50 -54.32 -0.19 -3.88 16 5 C 0.12 1.44 10.39 -16.57 -0.17 1.27 16 6 C -0.29 -3.85 6.13 -105.07 -0.64 -4.50 16 7 C 0.59 9.82 7.78 -12.52 -0.10 9.73 16 8 O -0.55 -11.18 16.56 5.27 0.09 -11.09 16 9 N -0.71 -11.11 4.91 -54.83 -0.27 -11.38 16 10 C 0.17 3.04 2.12 -67.88 -0.14 2.90 16 11 H 0.09 1.86 7.58 -51.92 -0.39 1.46 16 12 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 13 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 14 N -0.59 -14.48 2.99 -172.32 -0.52 -15.00 16 15 C -0.26 -6.90 9.58 -15.06 -0.14 -7.05 16 16 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 17 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 18 N -0.90 -25.95 11.20 55.49 0.62 -25.33 16 19 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 C 0.12 2.47 6.14 -3.71 -0.02 2.45 16 24 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 O -0.57 -8.63 13.16 -35.23 -0.46 -9.09 16 27 C 0.08 0.95 11.50 -16.98 -0.20 0.75 16 28 N -0.30 -3.63 12.50 30.86 0.39 -3.25 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.34 7.13 -51.93 -0.37 -0.03 16 36 H 0.18 1.80 7.23 -52.49 -0.38 1.42 16 37 H 0.39 5.07 7.55 -40.82 -0.31 4.76 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 45 H 0.37 4.04 9.08 45.56 0.41 4.45 16 46 H 0.19 1.65 7.50 -52.49 -0.39 1.25 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -34.34 376.46 -7.40 -41.74 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.36 Total: 7.69 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.34 Total: 7.58 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.03 Total: -58.83 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.38 Total: -20.18 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.34 -7.40 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090720956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.512 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds