Wall clock time and date at job start Fri Apr 10 2020 18:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47330 * 2 1 4 4 N 1.46502 * 109.46696 * 119.99756 * 2 1 3 5 5 C 1.34254 * 125.75754 * 274.99684 * 4 2 1 6 6 C 1.38038 * 107.42040 * 179.97438 * 5 4 2 7 7 C 1.47427 * 126.41476 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00306 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99729 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99930 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.46067 * 325.00093 * 10 9 7 12 12 C 1.53045 * 109.46126 * 84.97109 * 10 9 7 13 13 C 1.53186 * 109.31087 * 181.38499 * 12 10 9 14 14 N 1.46924 * 108.77969 * 305.36557 * 13 12 10 15 15 C 1.36939 * 120.63171 * 233.58906 * 14 13 12 16 16 H 1.08002 * 119.99715 * 151.83473 * 15 14 13 17 17 C 1.38805 * 119.99792 * 331.83057 * 15 14 13 18 18 N 1.31619 * 120.00310 * 343.08024 * 17 15 14 19 19 Si 1.86806 * 119.99520 * 163.07393 * 17 15 14 20 20 H 1.48497 * 109.47469 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46849 * 120.00560 * 19 17 15 22 22 H 1.48500 * 109.47274 * 239.99913 * 19 17 15 23 23 C 1.46923 * 118.73524 * 53.61179 * 14 13 12 24 24 C 1.53043 * 109.46180 * 205.03039 * 10 9 7 25 25 H 1.09002 * 109.49674 * 298.56458 * 24 10 9 26 26 O 1.42896 * 109.49783 * 58.66185 * 24 10 9 27 27 C 1.41292 * 107.17149 * 0.22219 * 6 5 4 28 28 N 1.30447 * 108.01989 * 359.62328 * 27 6 5 29 29 H 1.08997 * 109.47050 * 300.00415 * 1 2 3 30 30 H 1.09003 * 109.46972 * 60.00069 * 1 2 3 31 31 H 1.09000 * 109.47448 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47050 * 239.99585 * 2 1 3 33 33 H 1.08991 * 109.47461 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47036 * 299.99891 * 3 2 1 35 35 H 1.09001 * 109.47109 * 59.99363 * 3 2 1 36 36 H 1.08000 * 126.28848 * 0.02562 * 5 4 2 37 37 H 0.96994 * 120.00356 * 0.27703 * 9 7 6 38 38 H 1.08993 * 109.49708 * 301.34112 * 12 10 9 39 39 H 1.09003 * 109.49413 * 61.43573 * 12 10 9 40 40 H 1.09002 * 109.58479 * 65.15821 * 13 12 10 41 41 H 1.09005 * 109.58385 * 185.58176 * 13 12 10 42 42 H 0.96999 * 119.99443 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.59123 * 66.18069 * 23 14 13 44 44 H 1.09000 * 109.58740 * 186.45986 * 23 14 13 45 45 H 0.96693 * 114.00201 * 180.02562 * 26 24 10 46 46 H 1.07997 * 125.98912 * 179.73828 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1903 -0.1363 2.4069 6 6 2.6620 -1.1224 3.2497 7 6 2.9937 -0.9682 4.6778 8 8 2.8576 0.1115 5.2206 9 7 3.4468 -2.0241 5.3823 10 6 3.7770 -1.8708 6.8014 11 1 4.1953 -0.8787 6.9717 12 6 2.5088 -2.0403 7.6411 13 6 2.8515 -1.8451 9.1213 14 7 3.9401 -2.7643 9.4800 15 6 3.8095 -3.6202 10.5409 16 1 4.3443 -4.5586 10.5467 17 6 2.9899 -3.2818 11.6089 18 7 2.6063 -2.0337 11.7744 19 14 2.4314 -4.5980 12.8111 20 1 2.9966 -5.9102 12.4065 21 1 2.9054 -4.2549 14.1760 22 1 0.9484 -4.6749 12.8070 23 6 5.1717 -2.7472 8.6791 24 6 4.8029 -2.9327 7.2039 25 1 4.3761 -3.9249 7.0573 26 8 5.9749 -2.7931 6.3983 27 6 2.7730 -2.3059 2.4859 28 7 2.3835 -2.0395 1.2699 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.9946 0.8921 2.6727 37 1 3.5586 -2.8845 4.9486 38 1 1.7698 -1.2988 7.3378 39 1 2.1038 -3.0411 7.4904 40 1 3.1711 -0.8167 9.2898 41 1 1.9744 -2.0619 9.7311 42 1 2.0332 -1.7974 12.5205 43 1 5.6807 -1.7924 8.8115 44 1 5.8268 -3.5577 8.9988 45 1 6.6690 -3.4357 6.5990 46 1 3.1180 -3.2638 2.8463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090720956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:25 Heat of formation + Delta-G solvation = -17.408697 kcal Electronic energy + Delta-G solvation = -27476.752672 eV Core-core repulsion = 23595.488843 eV Total energy + Delta-G solvation = -3881.263829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45280 -40.76075 -39.19444 -36.94518 -36.72372 -35.68046 -33.77365 -32.02869 -31.46223 -30.89791 -29.99476 -28.25833 -27.09714 -24.96931 -23.92913 -23.46279 -23.03903 -21.32664 -20.98365 -20.83726 -19.15267 -18.61643 -17.97278 -17.25396 -16.93548 -16.65925 -16.50361 -15.98879 -15.69150 -15.55658 -15.54010 -15.05719 -14.94562 -14.75177 -14.44120 -13.90684 -13.85151 -13.80085 -13.53766 -13.25428 -13.21043 -13.10377 -12.93978 -12.74446 -12.41749 -12.36934 -12.30308 -12.06475 -12.02434 -11.95826 -11.85698 -11.32914 -11.06187 -10.82904 -10.58435 -10.55627 -10.07082 -9.62700 -8.74384 -7.88650 -5.36483 0.53292 1.17021 1.33932 1.48723 1.50643 1.61180 2.30159 2.50133 2.50590 3.16386 3.28581 3.41463 3.65881 3.75186 3.84140 3.89296 3.94100 4.05884 4.11076 4.12602 4.26090 4.35195 4.43077 4.57062 4.60887 4.64460 4.71162 4.76568 4.79745 4.86789 4.88964 5.01124 5.06833 5.14835 5.15681 5.19163 5.39107 5.42623 5.56714 5.62839 5.67907 5.89110 6.35877 6.50600 6.70944 6.92870 7.11486 7.36905 7.79718 8.32765 9.18839 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024230 B = 0.002557 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.308839 B =10946.061876 C =11340.263852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 C -0.165 4.165 4 N -0.350 5.350 5 C 0.131 3.869 6 C -0.312 4.312 7 C 0.591 3.409 8 O -0.598 6.598 9 N -0.699 5.699 10 C 0.173 3.827 11 H 0.054 0.946 12 C -0.128 4.128 13 C 0.181 3.819 14 N -0.604 5.604 15 C -0.263 4.263 16 H 0.077 0.923 17 C -0.052 4.052 18 N -0.937 5.937 19 Si 0.970 3.030 20 H -0.261 1.261 21 H -0.295 1.295 22 H -0.292 1.292 23 C 0.117 3.883 24 C 0.103 3.897 25 H 0.075 0.925 26 O -0.570 6.570 27 C 0.087 3.913 28 N -0.319 5.319 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.197 0.803 37 H 0.411 0.589 38 H 0.056 0.944 39 H 0.070 0.930 40 H -0.009 1.009 41 H 0.062 0.938 42 H 0.250 0.750 43 H 0.011 0.989 44 H 0.076 0.924 45 H 0.396 0.604 46 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 0.735 -26.184 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 C -0.222 4.222 4 N -0.129 5.129 5 C -0.022 4.022 6 C -0.327 4.327 7 C 0.380 3.620 8 O -0.480 6.480 9 N -0.349 5.349 10 C 0.067 3.933 11 H 0.073 0.927 12 C -0.169 4.169 13 C 0.054 3.946 14 N -0.328 5.328 15 C -0.392 4.392 16 H 0.095 0.905 17 C -0.248 4.248 18 N -0.583 5.583 19 Si 0.798 3.202 20 H -0.185 1.185 21 H -0.222 1.222 22 H -0.218 1.218 23 C -0.009 4.009 24 C 0.042 3.958 25 H 0.093 0.907 26 O -0.377 6.377 27 C -0.100 4.100 28 N -0.138 5.138 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.214 0.786 37 H 0.248 0.752 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.009 0.991 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.029 0.971 44 H 0.095 0.905 45 H 0.246 0.754 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -1.818 1.593 -27.287 27.394 hybrid contribution 0.149 -0.627 2.205 2.297 sum -1.669 0.967 -25.082 25.156 Atomic orbital electron populations 1.22241 0.92313 1.02909 1.04472 1.21783 0.95816 0.93709 0.84395 1.22258 1.02041 0.92628 1.05320 1.49104 1.47819 1.07031 1.08993 1.23075 0.94435 0.99945 0.84742 1.20182 1.21596 0.96287 0.94633 1.17634 0.75588 0.83289 0.85495 1.90744 1.56561 1.28162 1.72534 1.45573 1.66236 1.13082 1.09985 1.20611 0.93888 0.98683 0.80078 0.92737 1.22320 0.96650 1.01593 0.96305 1.20540 0.92134 0.90620 0.91298 1.44264 1.12113 1.43802 1.32653 1.19600 1.26444 0.97483 0.95706 0.90492 1.25898 1.02441 0.97516 0.98912 1.70215 1.39016 1.17414 1.31644 0.85165 0.77450 0.79387 0.78159 1.18469 1.22185 1.21839 1.21703 0.89221 0.99366 0.90657 1.22300 0.85622 0.97566 0.90326 0.90693 1.86464 1.28163 1.61721 1.61391 1.24418 0.96486 0.99338 0.89786 1.77108 1.21776 0.93944 1.20966 0.92176 0.87532 0.92875 0.86856 0.92050 0.87108 0.91233 0.78649 0.75247 0.92557 0.91164 0.99110 0.91955 0.94063 0.97109 0.90537 0.75436 0.76994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.52 71.98 0.69 -0.81 16 2 C 0.14 1.60 3.91 44.99 0.18 1.78 16 3 C -0.16 -1.23 8.82 71.98 0.64 -0.59 16 4 N -0.35 -6.66 3.50 -325.76 -1.14 -7.80 16 5 C 0.13 2.89 10.39 84.28 0.88 3.76 16 6 C -0.31 -8.09 6.13 -20.15 -0.12 -8.22 16 7 C 0.59 19.46 7.78 86.66 0.67 20.13 16 8 O -0.60 -24.75 16.56 -4.05 -0.07 -24.82 16 9 N -0.70 -21.03 4.91 -445.64 -2.19 -23.22 16 10 C 0.17 6.32 2.12 45.02 0.10 6.42 16 11 H 0.05 2.39 7.58 -2.38 -0.02 2.37 16 12 C -0.13 -5.22 5.65 30.67 0.17 -5.04 16 13 C 0.18 9.08 5.30 86.36 0.46 9.54 16 14 N -0.60 -30.00 2.99 -699.11 -2.09 -32.09 16 15 C -0.26 -14.02 9.58 84.03 0.81 -13.21 16 16 H 0.08 3.89 7.89 -2.91 -0.02 3.87 16 17 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 18 N -0.94 -55.97 11.20 21.65 0.24 -55.73 16 19 Si 0.97 44.17 29.59 68.60 2.03 46.20 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 23 C 0.12 4.71 6.14 86.36 0.53 5.24 16 24 C 0.10 3.35 3.14 30.67 0.10 3.44 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 26 O -0.57 -15.68 13.16 -148.98 -1.96 -17.65 16 27 C 0.09 1.87 11.50 85.65 0.99 2.85 16 28 N -0.32 -7.11 12.50 -56.28 -0.70 -7.82 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.07 0.55 7.13 -2.39 -0.02 0.53 16 36 H 0.20 3.70 7.23 -2.91 -0.02 3.67 16 37 H 0.41 9.55 7.55 -92.71 -0.70 8.85 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.06 3.50 6.06 -2.38 -0.01 3.48 16 42 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.08 2.79 7.93 -2.39 -0.02 2.77 16 45 H 0.40 7.14 9.08 -74.06 -0.67 6.46 16 46 H 0.21 3.12 7.50 -2.91 -0.02 3.10 16 Total: -1.00 -76.60 376.46 0.23 -76.37 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.37 Total: 23.73 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 6.48 Total: 22.82 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -5.88 Total: -126.66 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -2.03 Total: -42.46 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -76.60 0.23 -76.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090720956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.962 kcal (2) G-P(sol) polarization free energy of solvation -76.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds