Wall clock time and date at job start Fri Apr 10 2020 18:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47220 * 2 1 4 4 C 1.50705 * 109.47394 * 239.99893 * 2 1 3 5 5 O 1.21272 * 120.00163 * 243.43780 * 4 2 1 6 6 N 1.34780 * 119.99518 * 63.43648 * 4 2 1 7 7 C 1.46497 * 119.99573 * 180.02562 * 6 4 2 8 8 H 1.09002 * 109.46358 * 34.96714 * 7 6 4 9 9 C 1.53049 * 109.45984 * 274.99625 * 7 6 4 10 10 C 1.53191 * 109.31385 * 178.61311 * 9 7 6 11 11 N 1.46927 * 108.77486 * 54.63675 * 10 9 7 12 12 C 1.36940 * 120.62879 * 126.36189 * 11 10 9 13 13 H 1.07995 * 120.00018 * 208.43209 * 12 11 10 14 14 C 1.38805 * 119.99842 * 28.44447 * 12 11 10 15 15 N 1.31625 * 120.00222 * 15.44904 * 14 12 11 16 16 Si 1.86806 * 120.00018 * 195.45267 * 14 12 11 17 17 H 1.48503 * 109.46991 * 59.99834 * 16 14 12 18 18 H 1.48501 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46873 * 300.00069 * 16 14 12 20 20 C 1.46930 * 118.73912 * 306.39558 * 11 10 9 21 21 C 1.53034 * 109.46133 * 154.93226 * 7 6 4 22 22 H 1.09006 * 109.50006 * 61.43223 * 21 7 6 23 23 O 1.42899 * 109.49638 * 301.33498 * 21 7 6 24 24 C 1.50696 * 109.47120 * 119.99970 * 2 1 3 25 25 C 1.34671 * 126.58976 * 6.12199 * 24 2 1 26 26 N 1.34125 * 108.02018 * 179.69760 * 25 24 2 27 27 C 1.30499 * 109.25882 * 0.26706 * 26 25 24 28 28 N 1.35037 * 108.70008 * 359.97438 * 27 26 25 29 29 H 0.97006 * 126.40259 * 180.02562 * 28 27 26 30 30 H 1.09000 * 109.47426 * 300.00098 * 1 2 3 31 31 H 1.08997 * 109.46927 * 60.00222 * 1 2 3 32 32 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47188 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47160 * 300.00200 * 3 2 1 35 35 H 1.09000 * 109.47001 * 59.99641 * 3 2 1 36 36 H 0.96997 * 120.00474 * 0.02562 * 6 4 2 37 37 H 1.08994 * 109.49853 * 298.57079 * 9 7 6 38 38 H 1.09004 * 109.49286 * 58.66071 * 9 7 6 39 39 H 1.09003 * 109.58249 * 174.42250 * 10 9 7 40 40 H 1.09001 * 109.58992 * 294.84757 * 10 9 7 41 41 H 0.96998 * 119.99718 * 180.02562 * 15 14 12 42 42 H 1.08996 * 109.58584 * 173.39640 * 20 11 10 43 43 H 1.09004 * 109.58102 * 293.67542 * 20 11 10 44 44 H 0.96707 * 114.00182 * 179.97438 * 23 21 7 45 45 H 1.07999 * 125.99191 * 359.96270 * 25 24 2 46 46 H 1.08004 * 125.65317 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.6773 -1.7315 -1.1203 6 7 1.7649 -0.2109 -2.4534 7 6 2.2528 -0.9018 -3.6495 8 1 2.2319 -1.9785 -3.4810 9 6 3.6882 -0.4597 -3.9439 10 6 4.2071 -1.2098 -5.1747 11 7 3.2705 -0.9985 -6.2868 12 6 3.7144 -0.5233 -7.4920 13 1 3.0519 0.0498 -8.1236 14 6 5.0157 -0.7786 -7.9019 15 7 5.7236 -1.7122 -7.3020 16 14 5.7626 0.2029 -9.3049 17 1 5.7749 1.6446 -8.9489 18 1 7.1533 -0.2587 -9.5466 19 1 4.9537 0.0034 -10.5341 20 6 1.8485 -1.3059 -6.0811 21 6 1.3562 -0.5548 -4.8401 22 1 1.3960 0.5187 -5.0250 23 8 0.0106 -0.9402 -4.5521 24 6 2.0323 -0.7104 1.2304 25 6 1.2863 -1.3679 2.1386 26 7 2.1111 -1.8626 3.0733 27 6 3.3395 -1.5320 2.7820 28 7 3.3344 -0.8097 1.6411 29 1 4.1091 -0.4345 1.1938 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.2494 0.6060 -2.5415 37 1 3.7061 0.6128 -4.1371 38 1 4.3216 -0.6859 -3.0861 39 1 5.1907 -0.8276 -5.4476 40 1 4.2754 -2.2746 -4.9518 41 1 6.6331 -1.8903 -7.5883 42 1 1.2761 -0.9873 -6.9522 43 1 1.7243 -2.3789 -5.9347 44 1 -0.6145 -0.7491 -5.2648 45 1 0.2124 -1.4809 2.1157 46 1 4.2152 -1.7934 3.3576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090728489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:29 Heat of formation + Delta-G solvation = -11.522407 kcal Electronic energy + Delta-G solvation = -28425.960366 eV Core-core repulsion = 24544.951785 eV Total energy + Delta-G solvation = -3881.008581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.23801 -39.98386 -38.13010 -35.52957 -35.40183 -34.35667 -32.46812 -31.91423 -30.05426 -28.88407 -28.43046 -27.54878 -25.37906 -23.90271 -22.51759 -22.12462 -21.48802 -20.80537 -19.89420 -19.46713 -18.15581 -17.16902 -16.69873 -16.53121 -15.97774 -15.06458 -15.01707 -14.74183 -14.40358 -14.23461 -14.16653 -13.95004 -13.71428 -13.54740 -13.29694 -12.97864 -12.76927 -12.50496 -12.39961 -12.31966 -12.08663 -11.86751 -11.61526 -11.47787 -11.15021 -10.91583 -10.73452 -10.39889 -10.32427 -10.09597 -10.00605 -10.00116 -9.84214 -9.74178 -9.42943 -8.80939 -8.51033 -8.42751 -6.81808 -5.89676 -3.35638 1.96925 2.73481 3.06553 3.08571 3.30592 3.37000 3.37550 3.39323 4.27171 4.31259 4.45254 4.55805 4.63061 4.69393 4.88478 5.22976 5.25433 5.27794 5.29845 5.34625 5.41957 5.44890 5.49168 5.50243 5.64243 5.71580 5.77401 5.85991 5.90314 6.04955 6.17619 6.24549 6.42350 6.45649 6.58742 6.66629 6.71735 6.80021 7.22764 7.31238 7.55085 7.66595 7.67088 7.86516 8.01137 8.32842 8.36422 9.08094 9.69954 10.25905 11.18687 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.003110 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.999725 B = 9001.545369 C = 9659.023351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.007 4.007 3 C -0.142 4.142 4 C 0.517 3.483 5 O -0.533 6.533 6 N -0.711 5.711 7 C 0.163 3.837 8 H 0.087 0.913 9 C -0.145 4.145 10 C 0.171 3.829 11 N -0.588 5.588 12 C -0.261 4.261 13 H 0.067 0.933 14 C 0.006 3.994 15 N -0.900 5.900 16 Si 0.906 3.094 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.282 1.282 20 C 0.120 3.880 21 C 0.081 3.919 22 H 0.056 0.944 23 O -0.570 6.570 24 C 0.011 3.989 25 C -0.020 4.020 26 N -0.496 5.496 27 C 0.183 3.817 28 N -0.553 5.553 29 H 0.418 0.582 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.395 0.605 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.023 0.977 41 H 0.256 0.744 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.374 0.626 45 H 0.167 0.833 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 7.908 14.786 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.012 4.012 3 C -0.199 4.199 4 C 0.302 3.698 5 O -0.409 6.409 6 N -0.361 5.361 7 C 0.059 3.941 8 H 0.105 0.895 9 C -0.185 4.185 10 C 0.045 3.955 11 N -0.312 5.312 12 C -0.390 4.390 13 H 0.084 0.916 14 C -0.194 4.194 15 N -0.544 5.544 16 Si 0.735 3.265 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.208 1.208 20 C -0.007 4.007 21 C 0.020 3.980 22 H 0.074 0.926 23 O -0.375 6.375 24 C -0.106 4.106 25 C -0.169 4.169 26 N -0.215 5.215 27 C -0.101 4.101 28 N -0.154 5.154 29 H 0.256 0.744 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.229 0.771 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.220 0.780 45 H 0.184 0.816 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.113 6.412 16.077 19.115 hybrid contribution 0.698 1.581 -2.289 2.868 sum -7.415 7.993 13.788 17.577 Atomic orbital electron populations 1.21820 0.90662 1.03629 1.03262 1.19253 0.97874 0.95062 0.88980 1.21910 1.01389 0.93238 1.03410 1.20323 0.80113 0.85036 0.84346 1.90730 1.39582 1.24098 1.86524 1.46063 1.55809 1.28628 1.05568 1.21012 0.93184 0.98094 0.81822 0.89498 1.22596 0.93953 1.01252 1.00749 1.20836 0.95138 0.96154 0.83349 1.44023 1.01011 1.75863 1.10287 1.19120 0.97007 1.26925 0.95970 0.91577 1.25103 0.98808 0.97088 0.98354 1.70008 1.10542 1.30422 1.43392 0.86325 0.78335 0.79814 0.81990 1.20944 1.21519 1.20785 1.21532 0.88084 0.96865 0.94251 1.22758 0.81103 0.98261 0.95906 0.92637 1.86483 1.18453 1.86896 1.45652 1.20469 0.84332 1.06992 0.98785 1.21999 0.99624 1.01828 0.93420 1.70257 1.00241 1.23129 1.27887 1.24877 0.98068 0.97981 0.89135 1.43109 1.08479 1.42260 1.21600 0.74435 0.90823 0.91054 0.91230 0.92406 0.91094 0.90944 0.77096 0.92391 0.92227 0.88774 0.95883 0.93345 0.92158 0.95313 0.77966 0.81581 0.77772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 7.38 37.16 0.27 -0.89 16 2 C -0.01 -0.07 0.85 -156.81 -0.13 -0.21 16 3 C -0.14 -1.15 8.32 37.16 0.31 -0.84 16 4 C 0.52 7.48 6.44 -10.98 -0.07 7.41 16 5 O -0.53 -10.07 15.66 5.56 0.09 -9.98 16 6 N -0.71 -9.80 4.71 -53.77 -0.25 -10.06 16 7 C 0.16 2.81 2.12 -67.89 -0.14 2.66 16 8 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 9 C -0.15 -2.74 5.65 -26.61 -0.15 -2.89 16 10 C 0.17 4.01 5.29 -3.71 -0.02 3.99 16 11 N -0.59 -14.08 2.99 -172.32 -0.52 -14.60 16 12 C -0.26 -6.84 9.59 -15.06 -0.14 -6.98 16 13 H 0.07 1.68 7.88 -52.49 -0.41 1.26 16 14 C 0.01 0.15 4.95 -17.43 -0.09 0.07 16 15 N -0.90 -25.49 11.12 55.49 0.62 -24.87 16 16 Si 0.91 20.92 29.58 -169.99 -5.03 15.89 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.12 2.38 6.14 -3.71 -0.02 2.36 16 21 C 0.08 1.31 3.14 -26.62 -0.08 1.23 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 O -0.57 -8.07 13.16 -35.23 -0.46 -8.53 16 24 C 0.01 0.14 4.91 -81.60 -0.40 -0.27 16 25 C -0.02 -0.26 10.87 -17.81 -0.19 -0.46 16 26 N -0.50 -6.86 11.25 -14.67 -0.17 -7.02 16 27 C 0.18 2.03 13.04 -90.38 -1.18 0.85 16 28 N -0.55 -6.06 6.09 -10.30 -0.06 -6.13 16 29 H 0.42 3.81 8.96 -40.82 -0.37 3.44 16 30 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 31 H 0.07 0.54 7.79 -51.93 -0.40 0.13 16 32 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.49 7.38 -51.93 -0.38 0.11 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.40 4.41 7.47 -40.82 -0.31 4.11 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 2.45 6.03 -51.93 -0.31 2.14 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.37 3.73 9.09 45.56 0.41 4.15 16 45 H 0.17 1.82 7.30 -52.49 -0.38 1.44 16 46 H 0.21 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -34.33 371.21 -8.54 -42.87 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -6.30 Total: 10.80 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -2.04 Total: 6.04 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.38 Total: -62.68 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.38 Total: -18.52 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.33 -8.54 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090728489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.343 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds