Wall clock time and date at job start Fri Apr 10 2020 18:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47382 * 2 1 4 4 C 1.50698 * 109.47141 * 120.00312 * 2 1 3 5 5 O 1.21283 * 120.00219 * 125.06420 * 4 2 1 6 6 N 1.34787 * 119.99731 * 305.06125 * 4 2 1 7 7 C 1.46490 * 119.99852 * 180.02562 * 6 4 2 8 8 H 1.09005 * 109.45369 * 34.96482 * 7 6 4 9 9 C 1.53049 * 109.45974 * 275.00010 * 7 6 4 10 10 C 1.53190 * 109.33631 * 301.36126 * 9 7 6 11 11 N 1.46924 * 108.77661 * 305.34907 * 10 9 7 12 12 C 1.36937 * 120.62973 * 233.58661 * 11 10 9 13 13 H 1.07998 * 119.99954 * 30.62500 * 12 11 10 14 14 C 1.38812 * 120.00202 * 210.62673 * 12 11 10 15 15 N 1.31630 * 119.99735 * 16.30662 * 14 12 11 16 16 Si 1.86796 * 120.00341 * 196.30363 * 14 12 11 17 17 H 1.48498 * 109.47138 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47163 * 119.99962 * 16 14 12 19 19 H 1.48497 * 109.47377 * 240.00046 * 16 14 12 20 20 C 1.46929 * 118.73976 * 53.60983 * 11 10 9 21 21 C 1.53102 * 109.45095 * 154.98078 * 7 6 4 22 22 H 1.09004 * 109.49505 * 178.60432 * 21 7 6 23 23 O 1.42896 * 109.51432 * 298.67767 * 21 7 6 24 24 C 1.50701 * 109.47191 * 239.99900 * 2 1 3 25 25 C 1.34676 * 126.59282 * 125.63442 * 24 2 1 26 26 N 1.34122 * 108.01897 * 179.87829 * 25 24 2 27 27 C 1.30497 * 109.25892 * 0.39223 * 26 25 24 28 28 N 1.35039 * 108.70158 * 359.76347 * 27 26 25 29 29 H 0.97002 * 126.39967 * 180.02562 * 28 27 26 30 30 H 1.08997 * 109.47016 * 300.00235 * 1 2 3 31 31 H 1.09010 * 109.46856 * 60.00044 * 1 2 3 32 32 H 1.09002 * 109.47170 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47314 * 180.02562 * 3 2 1 34 34 H 1.09010 * 109.47089 * 299.99814 * 3 2 1 35 35 H 1.08997 * 109.47237 * 59.99900 * 3 2 1 36 36 H 0.96997 * 119.99644 * 359.97438 * 6 4 2 37 37 H 1.09000 * 109.49586 * 181.39743 * 9 7 6 38 38 H 1.08997 * 109.49747 * 61.33149 * 9 7 6 39 39 H 1.08997 * 109.58786 * 65.13587 * 10 9 7 40 40 H 1.09000 * 109.58590 * 185.56145 * 10 9 7 41 41 H 0.96997 * 119.99514 * 179.97438 * 15 14 12 42 42 H 1.09002 * 109.58426 * 66.18015 * 20 11 10 43 43 H 1.09000 * 109.58379 * 186.59838 * 20 11 10 44 44 H 0.96704 * 113.99767 * 179.87113 * 23 21 7 45 45 H 1.08003 * 125.98574 * 0.02562 * 25 24 2 46 46 H 1.08004 * 125.64959 * 179.73631 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.8034 -1.6403 1.1215 6 7 1.6247 -0.3125 2.4520 7 6 2.1135 -1.0027 3.6481 8 1 3.1453 -1.3165 3.4900 9 6 1.2427 -2.2318 3.9190 10 6 -0.2125 -1.7912 4.1062 11 7 -0.2656 -0.7703 5.1615 12 6 -1.1059 -0.9172 6.2327 13 1 -1.3522 -1.9046 6.5943 14 6 -1.6410 0.2029 6.8538 15 7 -1.6141 1.3693 6.2443 16 14 -2.3995 0.0551 8.5544 17 1 -2.3049 -1.3525 9.0180 18 1 -1.6698 0.9373 9.5002 19 1 -3.8262 0.4631 8.4974 20 6 0.5997 0.4115 5.0453 21 6 2.0458 -0.0538 4.8477 22 1 2.3860 -0.5744 5.7429 23 8 2.8828 1.0792 4.6078 24 6 2.0323 -0.7104 -1.2305 25 6 2.8939 -0.2228 -2.1435 26 7 3.0851 -1.1653 -3.0784 27 6 2.3684 -2.2154 -2.7839 28 7 1.6960 -1.9732 -1.6381 29 1 1.0886 -2.5807 -1.1877 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.0084 0.4314 2.5390 37 1 1.5904 -2.7319 4.8230 38 1 1.3093 -2.9182 3.0749 39 1 -0.5904 -1.3725 3.1734 40 1 -0.8195 -2.6487 4.3965 41 1 -1.9884 2.1519 6.6782 42 1 0.2881 1.0098 4.1891 43 1 0.5286 1.0072 5.9553 44 1 2.8869 1.7247 5.3279 45 1 3.3525 0.7549 -2.1248 46 1 2.3206 -3.1269 -3.3611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090728490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:33 Heat of formation + Delta-G solvation = -11.415833 kcal Electronic energy + Delta-G solvation = -29005.475973 eV Core-core repulsion = 25124.472014 eV Total energy + Delta-G solvation = -3881.003959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.17724 -40.02501 -38.07378 -35.39909 -35.31727 -34.13129 -32.42269 -31.91200 -29.75557 -29.02770 -28.50193 -27.39653 -25.46380 -23.95781 -22.51116 -22.02337 -21.64741 -20.98613 -19.86446 -18.77321 -18.17195 -17.02469 -16.70196 -16.55699 -15.56138 -15.08964 -15.02342 -14.76911 -14.31679 -14.13475 -14.11311 -13.90568 -13.80736 -13.51145 -13.46777 -12.89981 -12.63558 -12.38690 -12.27975 -12.23086 -11.94295 -11.75030 -11.68661 -11.33332 -11.15010 -11.09793 -10.92033 -10.50436 -10.29314 -10.10543 -10.04576 -9.94691 -9.73080 -9.50184 -9.38416 -8.74238 -8.61577 -8.36462 -6.83591 -5.97894 -3.43806 2.03917 2.82111 3.11989 3.14855 3.25163 3.34606 3.36275 3.51259 4.32545 4.39375 4.51686 4.69288 4.74330 4.78828 5.00870 5.17865 5.32093 5.35637 5.37159 5.46041 5.53439 5.55633 5.61338 5.66987 5.74004 5.78083 5.85001 5.94781 5.97684 5.99430 6.16972 6.25759 6.34125 6.35682 6.61975 6.71112 6.72725 6.87344 6.95154 7.28934 7.36632 7.64400 7.80378 8.02357 8.06178 8.27536 8.45450 9.01263 9.63201 10.20293 11.10256 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023241 B = 0.003356 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.502235 B = 8340.633591 C = 8453.470521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.007 4.007 3 C -0.137 4.137 4 C 0.520 3.480 5 O -0.545 6.545 6 N -0.699 5.699 7 C 0.165 3.835 8 H 0.078 0.922 9 C -0.144 4.144 10 C 0.146 3.854 11 N -0.586 5.586 12 C -0.259 4.259 13 H 0.067 0.933 14 C 0.007 3.993 15 N -0.900 5.900 16 Si 0.903 3.097 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.289 1.289 20 C 0.149 3.851 21 C 0.067 3.933 22 H 0.061 0.939 23 O -0.572 6.572 24 C 0.016 3.984 25 C -0.022 4.022 26 N -0.496 5.496 27 C 0.180 3.820 28 N -0.553 5.553 29 H 0.418 0.582 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.404 0.596 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.056 0.944 41 H 0.255 0.745 42 H 0.025 0.975 43 H 0.088 0.912 44 H 0.376 0.624 45 H 0.167 0.833 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.500 -1.701 -11.207 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.011 4.011 3 C -0.195 4.195 4 C 0.304 3.696 5 O -0.423 6.423 6 N -0.350 5.350 7 C 0.061 3.939 8 H 0.096 0.904 9 C -0.184 4.184 10 C 0.020 3.980 11 N -0.311 5.311 12 C -0.388 4.388 13 H 0.085 0.915 14 C -0.192 4.192 15 N -0.544 5.544 16 Si 0.732 3.268 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.216 1.216 20 C 0.022 3.978 21 C 0.006 3.994 22 H 0.079 0.921 23 O -0.377 6.377 24 C -0.101 4.101 25 C -0.170 4.170 26 N -0.215 5.215 27 C -0.104 4.104 28 N -0.155 5.155 29 H 0.255 0.745 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.241 0.759 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.106 0.894 44 H 0.223 0.777 45 H 0.184 0.816 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.636 -2.433 -12.472 13.901 hybrid contribution -1.647 0.175 2.464 2.969 sum 3.989 -2.258 -10.008 11.008 Atomic orbital electron populations 1.21931 0.91677 1.02713 1.03771 1.19241 0.96966 0.96133 0.88793 1.21832 1.02225 0.91870 1.03554 1.20309 0.80960 0.83833 0.84467 1.90681 1.35371 1.29513 1.86706 1.45965 1.48048 1.35996 1.05001 1.20821 0.98048 0.91756 0.83316 0.90405 1.22399 0.98490 0.96287 1.01251 1.20915 0.92572 0.92833 0.91663 1.43926 1.44124 1.20776 1.22234 1.19207 1.21584 0.92676 1.05330 0.91535 1.25121 0.98206 0.96445 0.99459 1.70019 1.48271 0.99660 1.36432 0.86224 0.78641 0.77729 0.84179 1.20156 1.21465 1.21582 1.21347 0.85018 0.89830 1.01615 1.22947 0.93775 0.86858 0.95845 0.92067 1.86416 1.68825 1.34662 1.47772 1.20511 1.03989 0.86818 0.98773 1.21996 1.01389 1.00288 0.93360 1.70244 1.22450 1.00884 1.27947 1.24844 0.95888 1.00605 0.89036 1.43098 1.37032 1.13976 1.21372 0.74484 0.90656 0.90986 0.92466 0.91357 0.90804 0.90798 0.75899 0.91154 0.91988 0.96310 0.92534 0.93521 0.95717 0.89405 0.77712 0.81572 0.77869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.30 37.16 0.31 -1.22 16 2 C -0.01 -0.08 0.85 -156.82 -0.13 -0.21 16 3 C -0.14 -1.44 7.39 37.16 0.27 -1.16 16 4 C 0.52 7.96 6.44 -10.98 -0.07 7.89 16 5 O -0.55 -10.10 15.67 5.55 0.09 -10.01 16 6 N -0.70 -10.86 3.98 -53.73 -0.21 -11.07 16 7 C 0.17 2.82 2.47 -67.86 -0.17 2.65 16 8 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 9 C -0.14 -2.45 5.77 -26.61 -0.15 -2.60 16 10 C 0.15 2.81 6.26 -3.71 -0.02 2.79 16 11 N -0.59 -13.18 2.98 -172.32 -0.51 -13.69 16 12 C -0.26 -6.54 9.56 -15.06 -0.14 -6.69 16 13 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 14 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 15 N -0.90 -23.95 11.35 55.49 0.63 -23.32 16 16 Si 0.90 20.34 29.58 -169.99 -5.03 15.31 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.15 3.09 4.61 -3.71 -0.02 3.07 16 21 C 0.07 1.17 3.36 -26.58 -0.09 1.08 16 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 23 O -0.57 -9.21 13.21 -35.23 -0.47 -9.67 16 24 C 0.02 0.21 4.91 -81.60 -0.40 -0.19 16 25 C -0.02 -0.30 10.86 -17.81 -0.19 -0.49 16 26 N -0.50 -7.03 11.25 -14.66 -0.16 -7.19 16 27 C 0.18 2.04 13.04 -90.38 -1.18 0.86 16 28 N -0.55 -6.29 6.11 -10.30 -0.06 -6.36 16 29 H 0.42 3.96 8.96 -40.82 -0.37 3.59 16 30 H 0.07 0.83 7.30 -51.93 -0.38 0.45 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.75 7.76 -51.93 -0.40 0.35 16 34 H 0.07 0.64 8.11 -51.92 -0.42 0.22 16 35 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 36 H 0.40 6.24 5.77 -40.82 -0.24 6.01 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.36 7.74 -51.93 -0.40 -0.04 16 40 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 41 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 42 H 0.02 0.54 6.64 -51.93 -0.34 0.19 16 43 H 0.09 2.06 6.24 -51.93 -0.32 1.73 16 44 H 0.38 4.80 9.08 45.56 0.41 5.21 16 45 H 0.17 1.94 7.30 -52.48 -0.38 1.56 16 46 H 0.20 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -31.93 367.50 -8.42 -40.34 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -6.15 Total: 14.27 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.07 Total: 5.86 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.33 Total: -61.63 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.38 Total: -19.69 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.93 -8.42 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090728490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.929 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds