Wall clock time and date at job start Fri Apr 10 2020 18:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47382 * 2 1 4 4 C 1.50698 * 109.47141 * 120.00312 * 2 1 3 5 5 O 1.21283 * 120.00219 * 125.06420 * 4 2 1 6 6 N 1.34787 * 119.99731 * 305.06125 * 4 2 1 7 7 C 1.46490 * 119.99852 * 180.02562 * 6 4 2 8 8 H 1.09005 * 109.45369 * 34.96482 * 7 6 4 9 9 C 1.53049 * 109.45974 * 275.00010 * 7 6 4 10 10 C 1.53190 * 109.33631 * 301.36126 * 9 7 6 11 11 N 1.46924 * 108.77661 * 305.34907 * 10 9 7 12 12 C 1.36937 * 120.62973 * 233.58661 * 11 10 9 13 13 H 1.07998 * 119.99954 * 30.62500 * 12 11 10 14 14 C 1.38812 * 120.00202 * 210.62673 * 12 11 10 15 15 N 1.31630 * 119.99735 * 16.30662 * 14 12 11 16 16 Si 1.86796 * 120.00341 * 196.30363 * 14 12 11 17 17 H 1.48498 * 109.47138 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47163 * 119.99962 * 16 14 12 19 19 H 1.48497 * 109.47377 * 240.00046 * 16 14 12 20 20 C 1.46929 * 118.73976 * 53.60983 * 11 10 9 21 21 C 1.53102 * 109.45095 * 154.98078 * 7 6 4 22 22 H 1.09004 * 109.49505 * 178.60432 * 21 7 6 23 23 O 1.42896 * 109.51432 * 298.67767 * 21 7 6 24 24 C 1.50701 * 109.47191 * 239.99900 * 2 1 3 25 25 C 1.34676 * 126.59282 * 125.63442 * 24 2 1 26 26 N 1.34122 * 108.01897 * 179.87829 * 25 24 2 27 27 C 1.30497 * 109.25892 * 0.39223 * 26 25 24 28 28 N 1.35039 * 108.70158 * 359.76347 * 27 26 25 29 29 H 0.97002 * 126.39967 * 180.02562 * 28 27 26 30 30 H 1.08997 * 109.47016 * 300.00235 * 1 2 3 31 31 H 1.09010 * 109.46856 * 60.00044 * 1 2 3 32 32 H 1.09002 * 109.47170 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47314 * 180.02562 * 3 2 1 34 34 H 1.09010 * 109.47089 * 299.99814 * 3 2 1 35 35 H 1.08997 * 109.47237 * 59.99900 * 3 2 1 36 36 H 0.96997 * 119.99644 * 359.97438 * 6 4 2 37 37 H 1.09000 * 109.49586 * 181.39743 * 9 7 6 38 38 H 1.08997 * 109.49747 * 61.33149 * 9 7 6 39 39 H 1.08997 * 109.58786 * 65.13587 * 10 9 7 40 40 H 1.09000 * 109.58590 * 185.56145 * 10 9 7 41 41 H 0.96997 * 119.99514 * 179.97438 * 15 14 12 42 42 H 1.09002 * 109.58426 * 66.18015 * 20 11 10 43 43 H 1.09000 * 109.58379 * 186.59838 * 20 11 10 44 44 H 0.96704 * 113.99767 * 179.87113 * 23 21 7 45 45 H 1.08003 * 125.98574 * 0.02562 * 25 24 2 46 46 H 1.08004 * 125.64959 * 179.73631 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.8034 -1.6403 1.1215 6 7 1.6247 -0.3125 2.4520 7 6 2.1135 -1.0027 3.6481 8 1 3.1453 -1.3165 3.4900 9 6 1.2427 -2.2318 3.9190 10 6 -0.2125 -1.7912 4.1062 11 7 -0.2656 -0.7703 5.1615 12 6 -1.1059 -0.9172 6.2327 13 1 -1.3522 -1.9046 6.5943 14 6 -1.6410 0.2029 6.8538 15 7 -1.6141 1.3693 6.2443 16 14 -2.3995 0.0551 8.5544 17 1 -2.3049 -1.3525 9.0180 18 1 -1.6698 0.9373 9.5002 19 1 -3.8262 0.4631 8.4974 20 6 0.5997 0.4115 5.0453 21 6 2.0458 -0.0538 4.8477 22 1 2.3860 -0.5744 5.7429 23 8 2.8828 1.0792 4.6078 24 6 2.0323 -0.7104 -1.2305 25 6 2.8939 -0.2228 -2.1435 26 7 3.0851 -1.1653 -3.0784 27 6 2.3684 -2.2154 -2.7839 28 7 1.6960 -1.9732 -1.6381 29 1 1.0886 -2.5807 -1.1877 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.0084 0.4314 2.5390 37 1 1.5904 -2.7319 4.8230 38 1 1.3093 -2.9182 3.0749 39 1 -0.5904 -1.3725 3.1734 40 1 -0.8195 -2.6487 4.3965 41 1 -1.9884 2.1519 6.6782 42 1 0.2881 1.0098 4.1891 43 1 0.5286 1.0072 5.9553 44 1 2.8869 1.7247 5.3279 45 1 3.3525 0.7549 -2.1248 46 1 2.3206 -3.1269 -3.3611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090728490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:32 Heat of formation + Delta-G solvation = -34.007219 kcal Electronic energy + Delta-G solvation = -29006.455609 eV Core-core repulsion = 25124.472014 eV Total energy + Delta-G solvation = -3881.983595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.11126 -41.30739 -39.47756 -36.85105 -36.40452 -35.65640 -33.62664 -33.29336 -31.34096 -30.49684 -29.51167 -28.24271 -27.21605 -25.06377 -24.01778 -23.51375 -22.79362 -22.00899 -20.91810 -20.21068 -19.29157 -18.66795 -18.08115 -17.72925 -16.90560 -16.74374 -16.21988 -15.96090 -15.68020 -15.50507 -15.21583 -15.19487 -14.98743 -14.90358 -14.39051 -14.37069 -13.92774 -13.63317 -13.51231 -13.31770 -13.23130 -13.05695 -12.88294 -12.70016 -12.69205 -12.58394 -12.22720 -12.13892 -11.98785 -11.84372 -11.26005 -11.04180 -10.94747 -10.89123 -10.67759 -10.59345 -10.01622 -9.31370 -8.67065 -7.90523 -5.38193 1.10343 1.45973 1.50735 1.58880 1.61645 2.13419 2.27637 2.36890 2.49476 3.13527 3.27106 3.46774 3.66226 3.69137 3.86632 3.91710 3.95423 4.07268 4.13730 4.25945 4.35720 4.45663 4.52788 4.63950 4.66134 4.67145 4.71108 4.81186 4.89489 4.91739 4.94699 5.07960 5.13982 5.14021 5.17156 5.30972 5.35623 5.53560 5.58123 5.66292 5.79038 6.36444 6.51400 6.58307 6.82906 7.13080 7.14431 7.21802 7.79830 8.32640 9.14933 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023241 B = 0.003356 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.502235 B = 8340.633591 C = 8453.470521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.002 3.998 3 C -0.136 4.136 4 C 0.520 3.480 5 O -0.577 6.577 6 N -0.695 5.695 7 C 0.168 3.832 8 H 0.070 0.930 9 C -0.131 4.131 10 C 0.148 3.852 11 N -0.601 5.601 12 C -0.267 4.267 13 H 0.064 0.936 14 C -0.037 4.037 15 N -0.925 5.925 16 Si 0.960 3.040 17 H -0.270 1.270 18 H -0.290 1.290 19 H -0.294 1.294 20 C 0.161 3.839 21 C 0.083 3.917 22 H 0.059 0.941 23 O -0.573 6.573 24 C 0.004 3.996 25 C -0.038 4.038 26 N -0.533 5.533 27 C 0.188 3.812 28 N -0.552 5.552 29 H 0.426 0.574 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.406 0.594 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.022 0.978 40 H 0.054 0.946 41 H 0.251 0.749 42 H 0.015 0.985 43 H 0.059 0.941 44 H 0.391 0.609 45 H 0.175 0.825 46 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 -2.193 -11.819 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.002 4.002 3 C -0.194 4.194 4 C 0.307 3.693 5 O -0.457 6.457 6 N -0.346 5.346 7 C 0.063 3.937 8 H 0.088 0.912 9 C -0.171 4.171 10 C 0.023 3.977 11 N -0.326 5.326 12 C -0.397 4.397 13 H 0.081 0.919 14 C -0.234 4.234 15 N -0.570 5.570 16 Si 0.789 3.211 17 H -0.195 1.195 18 H -0.216 1.216 19 H -0.221 1.221 20 C 0.035 3.965 21 C 0.022 3.978 22 H 0.077 0.923 23 O -0.379 6.379 24 C -0.113 4.113 25 C -0.186 4.186 26 N -0.253 5.253 27 C -0.096 4.096 28 N -0.154 5.154 29 H 0.265 0.735 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.243 0.757 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.078 0.922 44 H 0.241 0.759 45 H 0.192 0.808 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.560 -2.923 -13.078 14.509 hybrid contribution -1.598 0.296 2.608 3.073 sum 3.962 -2.627 -10.471 11.499 Atomic orbital electron populations 1.21919 0.90430 1.02981 1.04344 1.19199 0.97783 0.96399 0.86838 1.21860 1.01809 0.91007 1.04678 1.20861 0.80116 0.83317 0.85027 1.90662 1.36832 1.31044 1.87155 1.45919 1.47958 1.35879 1.04852 1.20698 0.97629 0.91698 0.83661 0.91214 1.22244 0.96794 0.96353 1.01676 1.20961 0.93999 0.91950 0.90786 1.44114 1.44209 1.21641 1.22586 1.19444 1.21527 0.92583 1.06140 0.91857 1.25723 0.99157 0.96328 1.02204 1.70129 1.49378 1.00005 1.37457 0.85328 0.77367 0.77712 0.80711 1.19503 1.21638 1.22085 1.21149 0.86656 0.89023 0.99721 1.22610 0.91790 0.87238 0.96120 0.92276 1.86397 1.68081 1.34674 1.48777 1.20592 1.04334 0.87510 0.98881 1.22264 1.01722 1.00908 0.93675 1.70241 1.24060 1.02019 1.28969 1.25616 0.94250 1.01003 0.88727 1.43151 1.37056 1.13724 1.21425 0.73497 0.91142 0.89303 0.92391 0.92063 0.88690 0.90679 0.75717 0.90992 0.91104 0.96001 0.92700 0.93938 0.96665 0.92232 0.75933 0.80760 0.74192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.30 71.98 0.60 -2.12 16 2 C 0.00 0.05 0.85 -53.68 -0.05 0.01 16 3 C -0.14 -2.65 7.39 71.98 0.53 -2.12 16 4 C 0.52 15.38 6.44 87.65 0.56 15.95 16 5 O -0.58 -20.86 15.67 -3.04 -0.05 -20.90 16 6 N -0.70 -20.93 3.98 -442.29 -1.76 -22.69 16 7 C 0.17 5.57 2.47 45.04 0.11 5.68 16 8 H 0.07 2.48 7.58 -2.38 -0.02 2.46 16 9 C -0.13 -4.28 5.77 30.67 0.18 -4.10 16 10 C 0.15 5.57 6.26 86.36 0.54 6.11 16 11 N -0.60 -26.82 2.98 -699.10 -2.08 -28.91 16 12 C -0.27 -13.45 9.56 84.03 0.80 -12.64 16 13 H 0.06 3.17 7.88 -2.91 -0.02 3.15 16 14 C -0.04 -1.91 4.91 84.86 0.42 -1.50 16 15 N -0.92 -49.50 11.35 21.65 0.25 -49.26 16 16 Si 0.96 41.77 29.58 68.60 2.03 43.80 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 20 C 0.16 6.67 4.61 86.36 0.40 7.07 16 21 C 0.08 2.87 3.36 30.69 0.10 2.97 16 22 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 23 O -0.57 -17.78 13.21 -148.98 -1.97 -19.74 16 24 C 0.00 0.10 4.91 40.95 0.20 0.30 16 25 C -0.04 -0.99 10.86 83.53 0.91 -0.09 16 26 N -0.53 -14.44 11.25 -200.31 -2.25 -16.70 16 27 C 0.19 3.89 13.04 180.26 2.35 6.24 16 28 N -0.55 -11.59 6.11 -186.49 -1.14 -12.73 16 29 H 0.43 7.30 8.96 -92.71 -0.83 6.47 16 30 H 0.07 1.46 7.30 -2.39 -0.02 1.44 16 31 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.28 7.76 -2.39 -0.02 1.26 16 34 H 0.09 1.45 8.11 -2.38 -0.02 1.43 16 35 H 0.07 1.44 7.93 -2.39 -0.02 1.42 16 36 H 0.41 12.17 5.77 -92.71 -0.54 11.64 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.02 0.82 7.74 -2.39 -0.02 0.80 16 40 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 41 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 42 H 0.02 0.66 6.64 -2.39 -0.02 0.65 16 43 H 0.06 2.82 6.24 -2.39 -0.01 2.80 16 44 H 0.39 9.54 9.08 -74.05 -0.67 8.86 16 45 H 0.18 3.95 7.30 -2.91 -0.02 3.93 16 46 H 0.24 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -67.29 367.50 -0.33 -67.62 By element: Atomic # 1 Polarization: 38.76 SS G_CDS: -1.01 Total: 37.75 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 7.66 Total: 21.76 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -6.99 Total: -130.28 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -2.02 Total: -40.65 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -67.29 -0.33 -67.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090728490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.617 kcal (2) G-P(sol) polarization free energy of solvation -67.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds