Wall clock time and date at job start Fri Apr 10 2020 18:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 109.46896 * 2 1 4 4 C 1.35364 * 126.38243 * 85.34847 * 3 2 1 5 5 C 1.41504 * 105.50178 * 180.12171 * 4 3 2 6 6 C 1.47706 * 126.52513 * 179.84620 * 5 4 3 7 7 O 1.21576 * 119.99384 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00627 * 179.71255 * 6 5 4 9 9 C 1.46503 * 120.00022 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.46165 * 35.02672 * 9 8 6 11 11 C 1.53034 * 109.45997 * 275.06209 * 9 8 6 12 12 C 1.53194 * 109.31710 * 301.34814 * 11 9 8 13 13 N 1.46929 * 108.77384 * 305.36500 * 12 11 9 14 14 C 1.36932 * 120.62945 * 233.62659 * 13 12 11 15 15 H 1.08004 * 119.99929 * 27.66874 * 14 13 12 16 16 C 1.38814 * 120.00115 * 207.66288 * 14 13 12 17 17 N 1.31618 * 119.99574 * 17.36563 * 16 14 13 18 18 Si 1.86795 * 120.00029 * 197.36224 * 16 14 13 19 19 H 1.48505 * 109.47103 * 60.00185 * 18 16 14 20 20 H 1.48505 * 109.47192 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47595 * 300.00281 * 18 16 14 22 22 C 1.46929 * 118.73674 * 53.60567 * 13 12 11 23 23 C 1.53042 * 109.45780 * 154.99802 * 9 8 6 24 24 H 1.08996 * 109.49864 * 178.64145 * 23 9 8 25 25 O 1.42909 * 109.49737 * 298.70342 * 23 9 8 26 26 N 1.31816 * 106.95847 * 359.58068 * 5 4 3 27 27 N 1.28463 * 110.07612 * 0.26348 * 26 5 4 28 28 C 1.46502 * 124.88541 * 180.02562 * 27 26 5 29 29 H 1.08992 * 109.47377 * 299.99862 * 1 2 3 30 30 H 1.08994 * 109.46989 * 60.00452 * 1 2 3 31 31 H 1.08997 * 109.46482 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47377 * 240.00137 * 2 1 3 33 33 H 1.08994 * 109.46989 * 119.99548 * 2 1 3 34 34 H 1.07996 * 127.25556 * 359.97438 * 4 3 2 35 35 H 0.97004 * 119.99693 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.49748 * 61.30125 * 11 9 8 37 37 H 1.08995 * 109.50110 * 181.39272 * 11 9 8 38 38 H 1.08997 * 109.58886 * 185.57501 * 12 11 9 39 39 H 1.09001 * 109.58581 * 65.14877 * 12 11 9 40 40 H 0.96999 * 119.99414 * 179.97438 * 17 16 14 41 41 H 1.09007 * 109.58111 * 186.60723 * 22 13 12 42 42 H 1.09001 * 109.70113 * 66.25127 * 22 13 12 43 43 H 0.96700 * 113.99539 * 180.02562 * 25 23 9 44 44 H 1.09001 * 109.47044 * 89.97854 * 28 27 26 45 45 H 1.08995 * 109.47089 * 209.97899 * 28 27 26 46 46 H 1.09001 * 109.46863 * 329.97610 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2166 2.2074 1.0862 5 6 2.6931 3.4412 0.5833 6 6 3.0430 4.6374 1.3760 7 8 2.9300 4.6189 2.5863 8 7 3.4924 5.7476 0.7581 9 6 3.8389 6.9342 1.5444 10 1 4.2697 6.6256 2.4969 11 6 2.5778 7.7626 1.8000 12 6 1.9559 8.1656 0.4592 13 7 2.9747 8.8509 -0.3477 14 6 2.7299 10.0912 -0.8738 15 1 2.0387 10.7595 -0.3819 16 6 3.3701 10.4895 -2.0393 17 7 3.9325 9.5921 -2.8208 18 14 3.4334 12.2990 -2.4985 19 1 4.1311 13.0570 -1.4289 20 1 4.1680 12.4593 -3.7792 21 1 2.0512 12.8193 -2.6528 22 6 4.2614 8.1802 -0.5789 23 6 4.8574 7.7772 0.7735 24 1 5.0974 8.6723 1.3472 25 8 6.0464 7.0131 0.5620 26 7 2.7709 3.3181 -0.7268 27 7 2.3886 2.1445 -1.0829 28 6 2.3460 1.6606 -2.4651 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.0356 1.9487 2.1190 35 1 3.5865 5.7610 -0.2073 36 1 1.8621 7.1694 2.3693 37 1 2.8387 8.6581 2.3637 38 1 1.1152 8.8371 0.6334 39 1 1.6118 7.2748 -0.0665 40 1 4.3796 9.8704 -3.6354 41 1 4.9420 8.8616 -1.0896 42 1 4.1077 7.2909 -1.1902 43 1 6.7372 7.4864 0.0784 44 1 3.3006 1.1994 -2.7181 45 1 1.5484 0.9250 -2.5680 46 1 2.1572 2.4976 -3.1373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090850496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:57 Heat of formation + Delta-G solvation = 12.206158 kcal Electronic energy + Delta-G solvation = -28202.427533 eV Core-core repulsion = 24322.447900 eV Total energy + Delta-G solvation = -3879.979633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.66033 -39.53008 -37.63350 -35.21956 -34.60508 -33.95971 -33.40255 -31.85449 -29.78209 -29.31522 -28.81907 -27.38621 -25.30302 -23.92010 -23.24279 -22.18516 -21.66542 -20.86468 -19.62432 -18.55712 -17.33149 -16.82589 -16.53162 -16.39169 -16.30654 -15.17924 -14.91567 -14.81569 -14.47640 -14.31208 -13.96182 -13.66617 -13.58548 -13.54487 -13.30947 -13.00049 -12.76556 -12.71340 -12.44548 -12.17265 -11.87078 -11.76931 -11.60878 -11.44384 -11.03638 -10.95929 -10.79106 -10.68710 -10.40961 -10.17591 -9.95087 -9.76838 -9.50807 -9.27013 -9.07531 -8.92566 -8.58630 -8.43446 -6.73667 -5.85018 -3.27955 1.74584 2.14948 2.44246 3.34982 3.40860 3.42333 3.61593 3.77036 4.29900 4.37378 4.43611 4.64469 4.67927 4.86056 4.94841 4.98326 5.15171 5.22989 5.29527 5.32910 5.45804 5.47210 5.52633 5.63242 5.69935 5.78142 5.85900 5.90681 5.96144 6.00120 6.10977 6.32677 6.44011 6.52693 6.53687 6.75643 6.77248 6.89996 7.05253 7.12848 7.47630 7.73690 7.85351 8.14663 8.16548 8.38546 8.65464 9.13439 9.76600 10.33043 11.22959 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003324 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.889517 B = 8422.779351 C = 9065.627351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C 0.006 3.994 4 C -0.178 4.178 5 C -0.009 4.009 6 C 0.602 3.398 7 O -0.548 6.548 8 N -0.690 5.690 9 C 0.164 3.836 10 H 0.080 0.920 11 C -0.145 4.145 12 C 0.145 3.855 13 N -0.587 5.587 14 C -0.254 4.254 15 H 0.068 0.932 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.904 3.096 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.146 3.854 23 C 0.067 3.933 24 H 0.062 0.938 25 O -0.572 6.572 26 N -0.254 5.254 27 N -0.282 5.282 28 C 0.085 3.915 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.159 0.841 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.021 0.979 40 H 0.255 0.745 41 H 0.092 0.908 42 H 0.026 0.974 43 H 0.375 0.625 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -18.147 2.439 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.118 4.118 4 C -0.206 4.206 5 C -0.169 4.169 6 C 0.386 3.614 7 O -0.424 6.424 8 N -0.341 5.341 9 C 0.060 3.940 10 H 0.098 0.902 11 C -0.185 4.185 12 C 0.019 3.981 13 N -0.312 5.312 14 C -0.384 4.384 15 H 0.085 0.915 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.733 3.267 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.019 3.981 23 C 0.006 3.994 24 H 0.080 0.920 25 O -0.376 6.376 26 N -0.090 5.090 27 N -0.070 5.070 28 C -0.056 4.056 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.177 0.823 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.044 0.956 43 H 0.222 0.778 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.659 -17.999 2.347 18.345 hybrid contribution 0.230 0.964 -0.564 1.140 sum -2.429 -17.035 1.783 17.299 Atomic orbital electron populations 1.21774 0.94116 1.02020 1.02750 1.20076 0.96361 0.88887 1.03693 1.21348 1.06560 0.96925 0.86991 1.21459 1.07205 0.92454 0.99450 1.21981 1.08221 0.96878 0.89807 1.16860 0.77136 0.81166 0.86241 1.90739 1.55189 1.83332 1.13164 1.45858 1.64381 1.12038 1.11794 1.20852 0.94309 0.84299 0.94560 0.90186 1.22407 0.96761 0.99227 1.00084 1.20925 0.91887 0.95524 0.89792 1.43955 1.09969 1.17834 1.59407 1.19170 1.25473 0.90022 1.03703 0.91462 1.25051 1.01591 0.97813 0.95170 1.70022 1.40223 1.31683 1.12698 0.86351 0.77856 0.85105 0.77349 1.20996 1.21648 1.20851 1.21393 0.88898 0.96838 0.90958 1.22934 0.84319 0.92344 0.99791 0.91973 1.86431 1.26736 1.44874 1.79595 1.73651 1.17850 1.02380 1.15088 1.45314 1.45713 1.08285 1.07733 1.22147 1.03937 1.01653 0.77836 0.91818 0.92751 0.91862 0.90849 0.89227 0.82313 0.75220 0.91624 0.91056 0.92505 0.96133 0.93536 0.88974 0.95638 0.77837 0.89782 0.88915 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.90 37.16 0.37 -0.60 16 2 C -0.05 -0.36 6.00 -27.88 -0.17 -0.53 16 3 C 0.01 0.07 6.17 -82.21 -0.51 -0.44 16 4 C -0.18 -2.54 10.73 -39.36 -0.42 -2.96 16 5 C -0.01 -0.15 7.13 -82.76 -0.59 -0.74 16 6 C 0.60 11.65 7.79 -12.40 -0.10 11.55 16 7 O -0.55 -11.57 16.59 5.30 0.09 -11.48 16 8 N -0.69 -13.32 4.15 -54.75 -0.23 -13.54 16 9 C 0.16 3.17 2.47 -67.89 -0.17 3.01 16 10 H 0.08 1.58 7.57 -51.93 -0.39 1.19 16 11 C -0.14 -2.74 5.77 -26.61 -0.15 -2.89 16 12 C 0.14 3.11 6.26 -3.71 -0.02 3.09 16 13 N -0.59 -14.39 2.99 -172.31 -0.52 -14.90 16 14 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 15 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 16 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 17 N -0.90 -25.34 11.19 55.49 0.62 -24.72 16 18 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.15 3.35 4.64 -3.71 -0.02 3.33 16 23 C 0.07 1.31 3.36 -26.61 -0.09 1.22 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 O -0.57 -10.40 13.21 -35.23 -0.47 -10.87 16 26 N -0.25 -4.15 11.67 33.42 0.39 -3.76 16 27 N -0.28 -3.51 3.70 -63.85 -0.24 -3.75 16 28 C 0.08 0.64 10.89 59.85 0.65 1.29 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.39 7.42 -51.93 -0.39 0.00 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 35 H 0.41 8.24 6.60 -40.82 -0.27 7.97 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 39 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 42 H 0.03 0.63 6.65 -51.93 -0.35 0.28 16 43 H 0.38 5.46 9.08 45.56 0.41 5.87 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.44 7.45 -51.93 -0.39 0.05 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -33.51 374.00 -7.45 -40.97 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -6.27 Total: 11.87 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -1.45 Total: 8.35 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.03 Total: -60.67 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.38 Total: -22.35 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.51 -7.45 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090850496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.172 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds