Wall clock time and date at job start Fri Apr 10 2020 18:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 109.46896 * 2 1 4 4 C 1.35364 * 126.38243 * 85.34847 * 3 2 1 5 5 C 1.41504 * 105.50178 * 180.12171 * 4 3 2 6 6 C 1.47706 * 126.52513 * 179.84620 * 5 4 3 7 7 O 1.21576 * 119.99384 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00627 * 179.71255 * 6 5 4 9 9 C 1.46503 * 120.00022 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.46165 * 35.02672 * 9 8 6 11 11 C 1.53034 * 109.45997 * 275.06209 * 9 8 6 12 12 C 1.53194 * 109.31710 * 301.34814 * 11 9 8 13 13 N 1.46929 * 108.77384 * 305.36500 * 12 11 9 14 14 C 1.36932 * 120.62945 * 233.62659 * 13 12 11 15 15 H 1.08004 * 119.99929 * 27.66874 * 14 13 12 16 16 C 1.38814 * 120.00115 * 207.66288 * 14 13 12 17 17 N 1.31618 * 119.99574 * 17.36563 * 16 14 13 18 18 Si 1.86795 * 120.00029 * 197.36224 * 16 14 13 19 19 H 1.48505 * 109.47103 * 60.00185 * 18 16 14 20 20 H 1.48505 * 109.47192 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47595 * 300.00281 * 18 16 14 22 22 C 1.46929 * 118.73674 * 53.60567 * 13 12 11 23 23 C 1.53042 * 109.45780 * 154.99802 * 9 8 6 24 24 H 1.08996 * 109.49864 * 178.64145 * 23 9 8 25 25 O 1.42909 * 109.49737 * 298.70342 * 23 9 8 26 26 N 1.31816 * 106.95847 * 359.58068 * 5 4 3 27 27 N 1.28463 * 110.07612 * 0.26348 * 26 5 4 28 28 C 1.46502 * 124.88541 * 180.02562 * 27 26 5 29 29 H 1.08992 * 109.47377 * 299.99862 * 1 2 3 30 30 H 1.08994 * 109.46989 * 60.00452 * 1 2 3 31 31 H 1.08997 * 109.46482 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47377 * 240.00137 * 2 1 3 33 33 H 1.08994 * 109.46989 * 119.99548 * 2 1 3 34 34 H 1.07996 * 127.25556 * 359.97438 * 4 3 2 35 35 H 0.97004 * 119.99693 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.49748 * 61.30125 * 11 9 8 37 37 H 1.08995 * 109.50110 * 181.39272 * 11 9 8 38 38 H 1.08997 * 109.58886 * 185.57501 * 12 11 9 39 39 H 1.09001 * 109.58581 * 65.14877 * 12 11 9 40 40 H 0.96999 * 119.99414 * 179.97438 * 17 16 14 41 41 H 1.09007 * 109.58111 * 186.60723 * 22 13 12 42 42 H 1.09001 * 109.70113 * 66.25127 * 22 13 12 43 43 H 0.96700 * 113.99539 * 180.02562 * 25 23 9 44 44 H 1.09001 * 109.47044 * 89.97854 * 28 27 26 45 45 H 1.08995 * 109.47089 * 209.97899 * 28 27 26 46 46 H 1.09001 * 109.46863 * 329.97610 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2166 2.2074 1.0862 5 6 2.6931 3.4412 0.5833 6 6 3.0430 4.6374 1.3760 7 8 2.9300 4.6189 2.5863 8 7 3.4924 5.7476 0.7581 9 6 3.8389 6.9342 1.5444 10 1 4.2697 6.6256 2.4969 11 6 2.5778 7.7626 1.8000 12 6 1.9559 8.1656 0.4592 13 7 2.9747 8.8509 -0.3477 14 6 2.7299 10.0912 -0.8738 15 1 2.0387 10.7595 -0.3819 16 6 3.3701 10.4895 -2.0393 17 7 3.9325 9.5921 -2.8208 18 14 3.4334 12.2990 -2.4985 19 1 4.1311 13.0570 -1.4289 20 1 4.1680 12.4593 -3.7792 21 1 2.0512 12.8193 -2.6528 22 6 4.2614 8.1802 -0.5789 23 6 4.8574 7.7772 0.7735 24 1 5.0974 8.6723 1.3472 25 8 6.0464 7.0131 0.5620 26 7 2.7709 3.3181 -0.7268 27 7 2.3886 2.1445 -1.0829 28 6 2.3460 1.6606 -2.4651 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.0356 1.9487 2.1190 35 1 3.5865 5.7610 -0.2073 36 1 1.8621 7.1694 2.3693 37 1 2.8387 8.6581 2.3637 38 1 1.1152 8.8371 0.6334 39 1 1.6118 7.2748 -0.0665 40 1 4.3796 9.8704 -3.6354 41 1 4.9420 8.8616 -1.0896 42 1 4.1077 7.2909 -1.1902 43 1 6.7372 7.4864 0.0784 44 1 3.3006 1.1994 -2.7181 45 1 1.5484 0.9250 -2.5680 46 1 2.1572 2.4976 -3.1373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090850496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:56 Heat of formation + Delta-G solvation = -12.685060 kcal Electronic energy + Delta-G solvation = -28203.506897 eV Core-core repulsion = 24322.447900 eV Total energy + Delta-G solvation = -3881.058997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.70305 -41.09722 -39.24782 -36.88063 -35.71192 -35.31411 -34.34600 -33.63865 -31.46365 -30.57163 -30.21788 -28.41032 -27.14864 -24.77797 -24.40100 -23.83828 -23.42196 -21.97952 -20.90426 -20.17542 -18.89004 -18.19376 -18.10219 -17.60354 -17.32806 -16.84471 -16.63468 -16.04196 -15.83304 -15.49202 -15.40805 -15.26809 -14.97475 -14.78358 -14.43181 -14.18990 -13.90438 -13.69406 -13.56041 -13.43133 -13.28060 -13.19889 -12.88414 -12.70743 -12.62607 -12.48176 -12.21484 -12.03775 -12.00152 -11.84330 -11.68547 -11.35862 -11.16134 -10.93921 -10.58486 -10.24098 -9.94664 -9.92194 -8.72701 -7.89681 -5.36065 0.52670 1.11595 1.48613 1.50227 1.57155 1.57548 2.20692 2.37450 2.49928 3.12017 3.26122 3.34984 3.61962 3.63948 3.85783 3.97468 4.12122 4.17762 4.24767 4.32926 4.34376 4.43506 4.44194 4.47270 4.54268 4.63892 4.68293 4.70977 4.81100 4.89299 4.94132 5.04805 5.07392 5.14274 5.19450 5.28604 5.33906 5.40163 5.50462 5.57283 5.64276 5.89682 6.33794 6.44535 6.81551 6.90238 7.10964 7.16486 7.78554 8.31804 9.16067 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003324 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.889517 B = 8422.779351 C = 9065.627351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.027 3.973 4 C -0.200 4.200 5 C -0.043 4.043 6 C 0.599 3.401 7 O -0.572 6.572 8 N -0.690 5.690 9 C 0.164 3.836 10 H 0.080 0.920 11 C -0.131 4.131 12 C 0.147 3.853 13 N -0.601 5.601 14 C -0.268 4.268 15 H 0.069 0.931 16 C -0.045 4.045 17 N -0.930 5.930 18 Si 0.968 3.032 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.278 1.278 22 C 0.160 3.840 23 C 0.084 3.916 24 H 0.070 0.930 25 O -0.575 6.575 26 N -0.285 5.285 27 N -0.276 5.276 28 C 0.071 3.929 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.164 0.836 35 H 0.406 0.594 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.008 0.992 40 H 0.251 0.749 41 H 0.068 0.932 42 H 0.003 0.997 43 H 0.391 0.609 44 H 0.104 0.896 45 H 0.129 0.871 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.030 -19.654 2.276 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.099 4.099 4 C -0.228 4.228 5 C -0.201 4.201 6 C 0.385 3.615 7 O -0.451 6.451 8 N -0.340 5.340 9 C 0.060 3.940 10 H 0.098 0.902 11 C -0.171 4.171 12 C 0.022 3.978 13 N -0.326 5.326 14 C -0.398 4.398 15 H 0.087 0.913 16 C -0.241 4.241 17 N -0.575 5.575 18 Si 0.796 3.204 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.204 1.204 22 C 0.033 3.967 23 C 0.023 3.977 24 H 0.088 0.912 25 O -0.381 6.381 26 N -0.122 5.122 27 N -0.065 5.065 28 C -0.067 4.067 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.181 0.819 35 H 0.242 0.758 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.026 0.974 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.021 0.979 43 H 0.241 0.759 44 H 0.122 0.878 45 H 0.147 0.853 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.061 -19.506 2.187 19.866 hybrid contribution 0.322 1.308 -0.598 1.474 sum -2.739 -18.198 1.589 18.471 Atomic orbital electron populations 1.21765 0.93477 1.03322 1.01906 1.20299 0.96673 0.85945 1.05793 1.21976 1.03970 0.98245 0.85671 1.21672 1.08345 0.92068 1.00738 1.21824 1.10636 0.97121 0.90513 1.17204 0.76400 0.81660 0.86208 1.90699 1.56362 1.83911 1.14147 1.45858 1.64538 1.12239 1.11388 1.20849 0.94348 0.84388 0.94437 0.90214 1.22261 0.96576 0.99684 0.98577 1.20953 0.91654 0.94776 0.90465 1.44165 1.11092 1.17676 1.59636 1.19486 1.25422 0.91002 1.03849 0.91299 1.25771 1.01617 1.01489 0.95198 1.70170 1.41095 1.33314 1.12966 0.85340 0.77775 0.80507 0.76770 1.20290 1.22030 1.20400 1.21168 0.88168 0.95035 0.92322 1.22616 0.84721 0.92741 0.97611 0.91245 1.86411 1.26684 1.45161 1.79867 1.73575 1.19207 1.04595 1.14774 1.45807 1.43825 1.07233 1.09630 1.22614 1.06511 1.02333 0.75259 0.93295 0.93050 0.89470 0.87991 0.87901 0.81862 0.75793 0.90970 0.89864 0.92184 0.97406 0.93957 0.91398 0.97863 0.75946 0.87767 0.85299 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.90 71.98 0.71 -0.76 16 2 C -0.05 -0.52 6.00 29.85 0.18 -0.34 16 3 C 0.03 0.56 6.17 41.40 0.26 0.82 16 4 C -0.20 -5.70 10.73 22.41 0.24 -5.46 16 5 C -0.04 -1.51 7.13 42.45 0.30 -1.20 16 6 C 0.60 23.89 7.79 86.75 0.68 24.56 16 7 O -0.57 -24.74 16.59 -3.96 -0.07 -24.81 16 8 N -0.69 -27.38 4.15 -445.42 -1.85 -29.23 16 9 C 0.16 6.38 2.47 45.02 0.11 6.49 16 10 H 0.08 3.14 7.57 -2.39 -0.02 3.12 16 11 C -0.13 -4.93 5.77 30.67 0.18 -4.76 16 12 C 0.15 6.38 6.26 86.36 0.54 6.93 16 13 N -0.60 -29.83 2.99 -699.07 -2.09 -31.93 16 14 C -0.27 -14.43 9.58 84.03 0.81 -13.63 16 15 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 16 C -0.04 -2.43 4.91 84.86 0.42 -2.02 16 17 N -0.93 -53.19 11.19 21.65 0.24 -52.95 16 18 Si 0.97 43.76 29.59 68.60 2.03 45.79 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 C 0.16 7.50 4.64 86.36 0.40 7.90 16 23 C 0.08 3.29 3.36 30.67 0.10 3.39 16 24 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 25 O -0.57 -20.75 13.21 -148.98 -1.97 -22.72 16 26 N -0.28 -9.38 11.67 -48.17 -0.56 -9.94 16 27 N -0.28 -6.52 3.70 -355.92 -1.32 -7.84 16 28 C 0.07 0.91 10.89 127.77 1.39 2.30 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.58 7.42 -2.39 -0.02 0.56 16 33 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.41 16.96 6.60 -92.71 -0.61 16.34 16 36 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 37 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 39 H 0.01 0.37 7.74 -2.39 -0.02 0.35 16 40 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 41 H 0.07 3.52 6.04 -2.38 -0.01 3.51 16 42 H 0.00 0.18 6.65 -2.39 -0.02 0.16 16 43 H 0.39 11.21 9.08 -74.06 -0.67 10.54 16 44 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.13 0.70 7.45 -2.39 -0.02 0.69 16 46 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -73.73 374.00 0.45 -73.27 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -0.28 Total: 36.12 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 6.31 Total: 24.22 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -5.58 Total: -131.88 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -2.03 Total: -47.53 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -73.73 0.45 -73.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090850496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.588 kcal (2) G-P(sol) polarization free energy of solvation -73.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds