Wall clock time and date at job start Fri Apr 10 2020 18:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35854 * 116.99858 * 2 1 4 4 N 1.30805 * 126.05931 * 0.19649 * 3 2 1 5 5 N 1.39924 * 108.87849 * 180.23951 * 4 3 2 6 6 C 1.46497 * 125.68582 * 179.74091 * 5 4 3 7 7 C 1.34162 * 108.62270 * 359.73608 * 5 4 3 8 8 C 1.38127 * 107.50777 * 359.97438 * 7 5 4 9 9 C 1.47254 * 126.44897 * 179.97438 * 8 7 5 10 10 O 1.21616 * 120.00080 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99665 * 0.02872 * 9 8 7 12 12 C 1.46502 * 120.00402 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47471 * 180.02562 * 12 11 9 14 14 H 1.08995 * 110.78123 * 51.75530 * 13 12 11 15 15 C 1.54324 * 110.71832 * 288.51656 * 13 12 11 16 16 N 1.47017 * 107.27525 * 219.44392 * 15 13 12 17 17 C 1.36938 * 125.64989 * 178.89435 * 16 15 13 18 18 H 1.07992 * 120.00364 * 341.52442 * 17 16 15 19 19 C 1.38817 * 119.99454 * 161.51996 * 17 16 15 20 20 N 1.31618 * 119.99422 * 157.64618 * 19 17 16 21 21 Si 1.86797 * 120.00283 * 337.64192 * 19 17 16 22 22 H 1.48505 * 109.46972 * 84.54118 * 21 19 17 23 23 H 1.48500 * 109.46976 * 204.53562 * 21 19 17 24 24 H 1.48499 * 109.47333 * 324.53719 * 21 19 17 25 25 C 1.47428 * 108.69896 * 358.94402 * 16 15 13 26 26 C 1.54904 * 104.83364 * 24.12890 * 25 16 15 27 27 H 1.09006 * 111.03986 * 81.07927 * 26 25 16 28 28 C 1.52999 * 111.00392 * 204.91537 * 26 25 16 29 29 H 1.08998 * 109.47392 * 299.99823 * 1 2 3 30 30 H 1.09004 * 109.47255 * 59.99748 * 1 2 3 31 31 H 1.08995 * 109.47189 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46912 * 269.99214 * 6 5 4 33 33 H 1.08992 * 109.47607 * 29.99630 * 6 5 4 34 34 H 1.09003 * 109.47102 * 150.00189 * 6 5 4 35 35 H 1.08000 * 126.24343 * 180.02562 * 7 5 4 36 36 H 0.97002 * 120.00328 * 359.97438 * 11 9 8 37 37 H 1.09005 * 109.47004 * 59.99366 * 12 11 9 38 38 H 1.08997 * 109.46505 * 300.00238 * 12 11 9 39 39 H 1.09007 * 109.88414 * 338.86742 * 15 13 12 40 40 H 1.09004 * 109.87900 * 100.02798 * 15 13 12 41 41 H 0.97008 * 119.99862 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.36715 * 265.28355 * 25 16 15 43 43 H 1.09009 * 110.36582 * 142.96352 * 25 16 15 44 44 H 1.09003 * 109.47220 * 172.19779 * 28 26 25 45 45 H 1.09002 * 109.47200 * 292.19105 * 28 26 25 46 46 H 1.09001 * 109.47189 * 52.19525 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4531 2.3766 0.0036 5 7 2.4282 3.3801 -0.0033 6 6 2.1703 4.8222 -0.0074 7 6 3.6385 2.8013 -0.0055 8 6 3.4452 1.4336 0.0006 9 6 4.4955 0.4016 0.0003 10 8 4.1911 -0.7759 0.0057 11 7 5.7942 0.7619 -0.0058 12 6 6.8393 -0.2648 -0.0067 13 6 8.2140 0.4068 -0.0135 14 1 8.2874 1.1455 0.7845 15 6 8.4984 1.0545 -1.3850 16 7 9.9150 0.8137 -1.6962 17 6 10.5601 1.2102 -2.8371 18 1 9.9903 1.4732 -3.7160 19 6 11.9465 1.2742 -2.8639 20 7 12.5858 1.2170 -4.0130 21 14 12.9048 1.4417 -1.2692 22 1 13.1107 0.0977 -0.6720 23 1 14.2228 2.0670 -1.5470 24 1 12.1429 2.2933 -0.3209 25 6 10.5256 0.0735 -0.5769 26 6 9.3422 -0.6509 0.1119 27 1 9.0808 -1.5661 -0.4196 28 6 9.6583 -0.9441 1.5799 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.1029 5.1762 -1.0362 33 1 1.2322 5.0251 0.5089 34 1 2.9844 5.3382 0.5017 35 1 4.5903 3.3117 -0.0102 36 1 6.0370 1.7010 -0.0104 37 1 6.7348 -0.8888 -0.8944 38 1 6.7417 -0.8831 0.8856 39 1 7.8683 0.5980 -2.1485 40 1 8.3068 2.1264 -1.3356 41 1 13.5547 1.2614 -4.0317 42 1 11.0043 0.7635 0.1179 43 1 11.2483 -0.6518 -0.9511 44 1 8.7652 -1.3256 2.0747 45 1 10.4523 -1.6886 1.6389 46 1 9.9827 -0.0272 2.0719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092882195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:04 Heat of formation + Delta-G solvation = 35.642543 kcal Electronic energy + Delta-G solvation = -27261.020757 eV Core-core repulsion = 23382.057402 eV Total energy + Delta-G solvation = -3878.963355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74263 -39.31343 -38.48480 -38.12677 -34.63013 -33.22887 -32.98230 -31.11506 -31.03269 -29.45757 -28.17241 -26.70084 -25.99420 -25.48669 -23.18235 -22.26507 -21.17404 -20.71694 -20.07503 -19.62924 -18.23912 -17.15259 -16.77093 -16.55469 -15.99289 -15.81085 -15.29019 -15.24326 -15.13360 -14.97129 -14.61654 -13.96017 -13.65588 -13.28014 -13.19230 -13.14021 -12.96846 -12.92123 -12.85361 -12.45581 -12.17309 -11.98492 -11.49504 -11.46944 -11.35703 -11.14123 -11.04881 -10.89303 -10.55043 -10.29782 -10.03113 -9.90301 -9.67328 -9.43380 -9.42363 -8.96416 -8.68520 -8.65215 -7.02806 -5.93790 -3.23773 1.20357 1.86594 2.06177 2.96244 3.35282 3.37581 3.47598 3.49876 3.50341 4.05534 4.33243 4.55418 4.69448 4.74906 4.85002 4.94053 4.97417 4.98789 5.01802 5.05019 5.12243 5.18273 5.25798 5.33241 5.44168 5.50901 5.57902 5.67890 5.79973 5.94412 6.01885 6.10666 6.14221 6.27102 6.40349 6.42236 6.48922 6.58329 6.68228 6.79893 6.83371 6.95114 7.31964 7.66718 7.73128 8.32376 8.42605 8.84837 9.70071 10.19564 11.22476 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.002748 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.036843 B =10185.820259 C =10876.081859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.266 6.266 3 C 0.316 3.684 4 N -0.354 5.354 5 N -0.349 5.349 6 C 0.099 3.901 7 C 0.124 3.876 8 C -0.289 4.289 9 C 0.592 3.408 10 O -0.534 6.534 11 N -0.726 5.726 12 C 0.136 3.864 13 C -0.111 4.111 14 H 0.080 0.920 15 C 0.141 3.859 16 N -0.610 5.610 17 C -0.241 4.241 18 H 0.091 0.909 19 C 0.021 3.979 20 N -0.909 5.909 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.303 1.303 24 H -0.277 1.277 25 C 0.116 3.884 26 C -0.097 4.097 27 H 0.083 0.917 28 C -0.141 4.141 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.192 0.808 36 H 0.396 0.604 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.036 0.964 40 H 0.027 0.973 41 H 0.263 0.737 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.474 5.412 12.529 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.168 6.168 3 C 0.110 3.890 4 N -0.194 5.194 5 N -0.130 5.130 6 C -0.042 4.042 7 C -0.029 4.029 8 C -0.305 4.305 9 C 0.379 3.621 10 O -0.411 6.411 11 N -0.378 5.378 12 C 0.013 3.987 13 C -0.131 4.131 14 H 0.099 0.901 15 C 0.015 3.985 16 N -0.336 5.336 17 C -0.368 4.368 18 H 0.109 0.891 19 C -0.178 4.178 20 N -0.553 5.553 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.232 1.232 24 H -0.203 1.203 25 C -0.009 4.009 26 C -0.117 4.117 27 H 0.101 0.899 28 C -0.199 4.199 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.208 0.792 36 H 0.230 0.770 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.576 4.978 12.344 26.208 hybrid contribution 1.354 0.547 0.766 1.650 sum -21.222 5.525 13.111 25.549 Atomic orbital electron populations 1.23031 0.77801 1.03810 1.01909 1.86523 1.21701 1.20393 1.88212 1.20412 0.90116 0.85236 0.93194 1.77312 1.13180 0.94593 1.34340 1.47683 1.03175 1.06558 1.55557 1.22034 1.04571 0.73408 1.04137 1.23113 0.91326 0.92173 0.96252 1.19738 0.91867 0.92593 1.26293 1.17044 0.81438 0.87474 0.76167 1.90805 1.82241 1.18053 1.50024 1.45829 1.05340 1.10299 1.76333 1.21374 0.84834 0.90163 1.02377 1.22519 0.93103 0.98237 0.99192 0.90144 1.21415 0.87337 0.96985 0.92739 1.44750 1.06034 1.63922 1.18900 1.18637 0.89690 1.40710 0.87784 0.89129 1.24998 0.96099 1.00296 0.96364 1.69852 1.08049 1.52945 1.24453 0.86963 0.78770 0.78053 0.84838 1.21142 1.23153 1.20316 1.22025 0.94696 0.94083 0.90065 1.22309 0.95478 0.97955 0.95934 0.89904 1.21729 1.01167 1.01470 0.95486 0.92529 0.92476 0.87994 0.90011 0.88876 0.88684 0.79162 0.77027 0.91026 0.91492 0.94644 0.95467 0.92738 0.95630 0.92347 0.92670 0.92587 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.70 101.05 1.08 1.36 16 2 O -0.27 -3.74 9.98 -24.65 -0.25 -3.99 16 3 C 0.32 4.31 7.85 -16.66 -0.13 4.18 16 4 N -0.35 -4.19 11.90 30.79 0.37 -3.82 16 5 N -0.35 -3.00 3.97 -67.60 -0.27 -3.27 16 6 C 0.10 0.37 11.44 59.85 0.68 1.05 16 7 C 0.12 1.06 10.98 -16.57 -0.18 0.87 16 8 C -0.29 -3.68 6.14 -104.95 -0.64 -4.32 16 9 C 0.59 8.76 7.81 -12.60 -0.10 8.66 16 10 O -0.53 -10.08 16.43 -0.10 0.00 -10.08 16 11 N -0.73 -8.99 5.46 -61.44 -0.34 -9.33 16 12 C 0.14 1.88 5.02 -4.04 -0.02 1.86 16 13 C -0.11 -1.65 2.43 -88.79 -0.22 -1.86 16 14 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 15 C 0.14 2.63 6.75 -3.07 -0.02 2.61 16 16 N -0.61 -14.49 3.21 -170.07 -0.55 -15.04 16 17 C -0.24 -6.81 10.57 -15.06 -0.16 -6.97 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.02 0.61 5.43 -17.43 -0.09 0.51 16 20 N -0.91 -28.08 13.97 55.49 0.78 -27.31 16 21 Si 0.88 22.46 24.27 -169.99 -4.13 18.34 16 22 H -0.28 -6.97 6.49 56.52 0.37 -6.60 16 23 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 24 H -0.28 -6.89 6.66 56.52 0.38 -6.51 16 25 C 0.12 2.48 4.16 -2.53 -0.01 2.47 16 26 C -0.10 -1.57 3.09 -88.47 -0.27 -1.84 16 27 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 28 C -0.14 -1.87 9.31 37.16 0.35 -1.53 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.23 8.14 -51.92 -0.42 -0.19 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 35 H 0.19 0.81 7.46 -52.49 -0.39 0.41 16 36 H 0.40 3.77 7.39 -40.82 -0.30 3.47 16 37 H 0.07 1.11 7.94 -51.93 -0.41 0.70 16 38 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.04 0.68 7.68 -51.92 -0.40 0.29 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 42 H 0.03 0.57 5.42 -51.93 -0.28 0.29 16 43 H 0.06 1.35 6.63 -51.92 -0.34 1.01 16 44 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.70 8.07 -51.93 -0.42 0.29 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -38.11 375.49 -5.69 -43.80 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.23 Total: -2.00 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 0.26 Total: 7.04 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.01 Total: -58.76 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.25 Total: -14.07 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.13 Total: 18.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.11 -5.69 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092882195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.438 kcal (2) G-P(sol) polarization free energy of solvation -38.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds