Wall clock time and date at job start Fri Apr 10 2020 18:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35854 * 116.99858 * 2 1 4 4 N 1.30805 * 126.05931 * 0.19649 * 3 2 1 5 5 N 1.39924 * 108.87849 * 180.23951 * 4 3 2 6 6 C 1.46497 * 125.68582 * 179.74091 * 5 4 3 7 7 C 1.34162 * 108.62270 * 359.73608 * 5 4 3 8 8 C 1.38127 * 107.50777 * 359.97438 * 7 5 4 9 9 C 1.47254 * 126.44897 * 179.97438 * 8 7 5 10 10 O 1.21616 * 120.00080 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99665 * 0.02872 * 9 8 7 12 12 C 1.46502 * 120.00402 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47471 * 180.02562 * 12 11 9 14 14 H 1.08995 * 110.78123 * 51.75530 * 13 12 11 15 15 C 1.54324 * 110.71832 * 288.51656 * 13 12 11 16 16 N 1.47017 * 107.27525 * 219.44392 * 15 13 12 17 17 C 1.36938 * 125.64989 * 178.89435 * 16 15 13 18 18 H 1.07992 * 120.00364 * 341.52442 * 17 16 15 19 19 C 1.38817 * 119.99454 * 161.51996 * 17 16 15 20 20 N 1.31618 * 119.99422 * 157.64618 * 19 17 16 21 21 Si 1.86797 * 120.00283 * 337.64192 * 19 17 16 22 22 H 1.48505 * 109.46972 * 84.54118 * 21 19 17 23 23 H 1.48500 * 109.46976 * 204.53562 * 21 19 17 24 24 H 1.48499 * 109.47333 * 324.53719 * 21 19 17 25 25 C 1.47428 * 108.69896 * 358.94402 * 16 15 13 26 26 C 1.54904 * 104.83364 * 24.12890 * 25 16 15 27 27 H 1.09006 * 111.03986 * 81.07927 * 26 25 16 28 28 C 1.52999 * 111.00392 * 204.91537 * 26 25 16 29 29 H 1.08998 * 109.47392 * 299.99823 * 1 2 3 30 30 H 1.09004 * 109.47255 * 59.99748 * 1 2 3 31 31 H 1.08995 * 109.47189 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46912 * 269.99214 * 6 5 4 33 33 H 1.08992 * 109.47607 * 29.99630 * 6 5 4 34 34 H 1.09003 * 109.47102 * 150.00189 * 6 5 4 35 35 H 1.08000 * 126.24343 * 180.02562 * 7 5 4 36 36 H 0.97002 * 120.00328 * 359.97438 * 11 9 8 37 37 H 1.09005 * 109.47004 * 59.99366 * 12 11 9 38 38 H 1.08997 * 109.46505 * 300.00238 * 12 11 9 39 39 H 1.09007 * 109.88414 * 338.86742 * 15 13 12 40 40 H 1.09004 * 109.87900 * 100.02798 * 15 13 12 41 41 H 0.97008 * 119.99862 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.36715 * 265.28355 * 25 16 15 43 43 H 1.09009 * 110.36582 * 142.96352 * 25 16 15 44 44 H 1.09003 * 109.47220 * 172.19779 * 28 26 25 45 45 H 1.09002 * 109.47200 * 292.19105 * 28 26 25 46 46 H 1.09001 * 109.47189 * 52.19525 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4531 2.3766 0.0036 5 7 2.4282 3.3801 -0.0033 6 6 2.1703 4.8222 -0.0074 7 6 3.6385 2.8013 -0.0055 8 6 3.4452 1.4336 0.0006 9 6 4.4955 0.4016 0.0003 10 8 4.1911 -0.7759 0.0057 11 7 5.7942 0.7619 -0.0058 12 6 6.8393 -0.2648 -0.0067 13 6 8.2140 0.4068 -0.0135 14 1 8.2874 1.1455 0.7845 15 6 8.4984 1.0545 -1.3850 16 7 9.9150 0.8137 -1.6962 17 6 10.5601 1.2102 -2.8371 18 1 9.9903 1.4732 -3.7160 19 6 11.9465 1.2742 -2.8639 20 7 12.5858 1.2170 -4.0130 21 14 12.9048 1.4417 -1.2692 22 1 13.1107 0.0977 -0.6720 23 1 14.2228 2.0670 -1.5470 24 1 12.1429 2.2933 -0.3209 25 6 10.5256 0.0735 -0.5769 26 6 9.3422 -0.6509 0.1119 27 1 9.0808 -1.5661 -0.4196 28 6 9.6583 -0.9441 1.5799 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.1029 5.1762 -1.0362 33 1 1.2322 5.0251 0.5089 34 1 2.9844 5.3382 0.5017 35 1 4.5903 3.3117 -0.0102 36 1 6.0370 1.7010 -0.0104 37 1 6.7348 -0.8888 -0.8944 38 1 6.7417 -0.8831 0.8856 39 1 7.8683 0.5980 -2.1485 40 1 8.3068 2.1264 -1.3356 41 1 13.5547 1.2614 -4.0317 42 1 11.0043 0.7635 0.1179 43 1 11.2483 -0.6518 -0.9511 44 1 8.7652 -1.3256 2.0747 45 1 10.4523 -1.6886 1.6389 46 1 9.9827 -0.0272 2.0719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092882195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:03 Heat of formation + Delta-G solvation = 4.358984 kcal Electronic energy + Delta-G solvation = -27262.377314 eV Core-core repulsion = 23382.057402 eV Total energy + Delta-G solvation = -3880.319912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.52352 -40.52105 -39.51336 -39.32726 -36.00056 -34.71888 -33.83032 -32.93690 -32.00410 -30.65954 -28.82874 -27.90189 -27.33702 -26.65953 -24.47088 -23.43827 -22.17874 -21.89248 -21.34307 -20.83515 -19.19326 -18.80077 -17.96226 -17.36179 -17.14451 -16.90880 -16.80173 -16.22102 -15.99690 -15.98077 -15.78966 -15.26145 -14.99104 -14.89919 -14.51333 -14.14230 -14.06328 -13.95702 -13.53443 -13.47370 -13.39851 -13.21271 -12.85794 -12.81476 -12.62354 -12.45728 -12.21676 -12.15833 -11.94018 -11.72050 -11.62082 -11.46929 -11.29359 -10.88614 -10.76293 -10.25863 -10.02478 -9.48819 -9.01705 -8.16215 -5.42276 0.49003 1.12031 1.26901 1.33565 1.40228 1.50039 2.15464 2.43964 2.44283 2.48375 3.04839 3.33985 3.39816 3.70462 3.79938 3.82275 3.87917 4.22247 4.26896 4.31698 4.32197 4.37452 4.42492 4.49833 4.54060 4.56229 4.63429 4.65413 4.73746 4.76797 4.78675 4.85393 4.89997 4.98175 5.09142 5.12831 5.28290 5.38770 5.49236 5.57234 5.71028 5.85668 6.12195 6.15371 6.48647 6.72766 6.79342 7.39505 7.56837 8.13885 9.03899 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.002748 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.036843 B =10185.820259 C =10876.081859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.299 6.299 3 C 0.292 3.708 4 N -0.371 5.371 5 N -0.341 5.341 6 C 0.087 3.913 7 C 0.154 3.846 8 C -0.331 4.331 9 C 0.592 3.408 10 O -0.587 6.587 11 N -0.712 5.712 12 C 0.146 3.854 13 C -0.089 4.089 14 H 0.110 0.890 15 C 0.135 3.865 16 N -0.630 5.630 17 C -0.234 4.234 18 H 0.056 0.944 19 C -0.041 4.041 20 N -0.959 5.959 21 Si 0.949 3.051 22 H -0.272 1.272 23 H -0.311 1.311 24 H -0.261 1.261 25 C 0.109 3.891 26 C -0.090 4.090 27 H 0.077 0.923 28 C -0.136 4.136 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.239 0.761 36 H 0.413 0.587 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.023 0.977 40 H 0.043 0.957 41 H 0.262 0.738 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.073 7.305 15.541 27.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.202 6.202 3 C 0.087 3.913 4 N -0.212 5.212 5 N -0.121 5.121 6 C -0.051 4.051 7 C -0.001 4.001 8 C -0.346 4.346 9 C 0.381 3.619 10 O -0.468 6.468 11 N -0.364 5.364 12 C 0.022 3.978 13 C -0.108 4.108 14 H 0.128 0.872 15 C 0.011 3.989 16 N -0.356 5.356 17 C -0.362 4.362 18 H 0.074 0.926 19 C -0.235 4.235 20 N -0.607 5.607 21 Si 0.777 3.223 22 H -0.198 1.198 23 H -0.239 1.239 24 H -0.186 1.186 25 C -0.016 4.016 26 C -0.110 4.110 27 H 0.096 0.904 28 C -0.193 4.193 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.138 0.862 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.149 0.851 35 H 0.255 0.745 36 H 0.249 0.751 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.226 6.922 15.397 28.713 hybrid contribution 1.408 0.042 -0.274 1.435 sum -21.819 6.963 15.124 27.446 Atomic orbital electron populations 1.23220 0.76035 1.05182 1.02274 1.86457 1.23754 1.21559 1.88416 1.20742 0.90870 0.85483 0.94208 1.77256 1.14504 0.94759 1.34685 1.48176 1.02773 1.07690 1.53475 1.22513 1.06374 0.70652 1.05594 1.23707 0.92815 0.90683 0.92866 1.19752 0.91016 0.94005 1.29855 1.17353 0.82219 0.87225 0.75112 1.90769 1.83060 1.20277 1.52673 1.45624 1.04357 1.10937 1.75508 1.21164 0.84564 0.90269 1.01841 1.22386 0.92902 0.98055 0.97440 0.87187 1.21606 0.84272 0.98251 0.94777 1.44869 1.07973 1.64373 1.18409 1.18574 0.89818 1.39262 0.88592 0.92610 1.25674 0.97220 1.01050 0.99526 1.69990 1.08193 1.55569 1.26901 0.85908 0.76834 0.78638 0.80912 1.19751 1.23921 1.18619 1.22152 0.96259 0.93715 0.89461 1.22265 0.93558 0.97496 0.97642 0.90447 1.21712 1.02489 1.02183 0.92921 0.91933 0.92238 0.86192 0.88764 0.88500 0.85119 0.74463 0.75056 0.93285 0.90525 0.95859 0.93852 0.92951 0.95184 0.94940 0.90306 0.92289 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.70 113.37 1.21 1.73 16 2 O -0.30 -8.69 9.98 -86.78 -0.87 -9.56 16 3 C 0.29 7.94 7.85 85.70 0.67 8.61 16 4 N -0.37 -8.39 11.90 -169.99 -2.02 -10.41 16 5 N -0.34 -4.86 3.97 -367.79 -1.46 -6.32 16 6 C 0.09 0.31 11.44 127.77 1.46 1.77 16 7 C 0.15 2.10 10.98 84.31 0.93 3.02 16 8 C -0.33 -8.01 6.14 -20.08 -0.12 -8.13 16 9 C 0.59 17.04 7.81 86.61 0.68 17.71 16 10 O -0.59 -22.54 16.43 1.05 0.02 -22.53 16 11 N -0.71 -15.89 5.46 -466.54 -2.55 -18.44 16 12 C 0.15 3.69 5.02 86.38 0.43 4.12 16 13 C -0.09 -2.33 2.43 -9.61 -0.02 -2.36 16 14 H 0.11 2.35 8.04 -2.39 -0.02 2.33 16 15 C 0.14 4.81 6.75 86.73 0.59 5.40 16 16 N -0.63 -29.49 3.21 -691.97 -2.22 -31.71 16 17 C -0.23 -13.46 10.57 84.03 0.89 -12.57 16 18 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 19 C -0.04 -2.40 5.43 84.86 0.46 -1.94 16 20 N -0.96 -61.13 13.97 21.65 0.30 -60.82 16 21 Si 0.95 46.43 24.27 68.60 1.66 48.09 16 22 H -0.27 -12.58 6.49 99.48 0.65 -11.94 16 23 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 24 H -0.26 -11.97 6.66 99.48 0.66 -11.31 16 25 C 0.11 4.43 4.16 86.85 0.36 4.79 16 26 C -0.09 -2.67 3.09 -9.40 -0.03 -2.70 16 27 H 0.08 2.39 8.05 -2.38 -0.02 2.37 16 28 C -0.14 -3.04 9.31 71.98 0.67 -2.37 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.13 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.24 0.66 7.46 -2.91 -0.02 0.64 16 36 H 0.41 6.23 7.39 -92.71 -0.69 5.55 16 37 H 0.05 1.49 7.94 -2.38 -0.02 1.47 16 38 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 39 H 0.02 0.89 7.68 -2.38 -0.02 0.87 16 40 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 42 H 0.03 1.23 5.42 -2.39 -0.01 1.21 16 43 H 0.03 1.48 6.63 -2.38 -0.02 1.46 16 44 H 0.08 1.44 8.10 -2.39 -0.02 1.42 16 45 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 1.33 8.07 -2.39 -0.02 1.31 16 Total: -1.00 -88.35 375.49 1.24 -87.11 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.20 Total: 7.48 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 8.17 Total: 17.10 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -7.95 Total: -127.70 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.85 Total: -32.08 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.66 Total: 48.09 kcal Total: -88.35 1.24 -87.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092882195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.474 kcal (2) G-P(sol) polarization free energy of solvation -88.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds