Wall clock time and date at job start Fri Apr 10 2020 18:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.91697 * 2 1 4 4 C 1.55120 * 111.16459 * 236.07007 * 2 1 3 5 5 N 1.47418 * 104.94558 * 205.13357 * 4 2 1 6 6 C 1.34777 * 125.65132 * 203.96547 * 5 4 2 7 7 O 1.21734 * 119.99911 * 174.30042 * 6 5 4 8 8 C 1.46372 * 119.99758 * 354.30327 * 6 5 4 9 9 C 1.36725 * 126.82668 * 353.09600 * 8 6 5 10 10 N 1.33223 * 107.96127 * 180.02562 * 9 8 6 11 11 C 1.31538 * 109.76371 * 359.97438 * 10 9 8 12 12 O 1.35207 * 125.49280 * 180.02562 * 11 10 9 13 13 N 1.34945 * 109.01475 * 359.72624 * 11 10 9 14 14 C 1.46498 * 126.54425 * 180.30107 * 13 11 10 15 15 C 1.47021 * 108.70408 * 24.00299 * 5 4 2 16 16 C 1.54330 * 107.27011 * 358.94278 * 15 5 4 17 17 H 1.08992 * 110.72107 * 96.34954 * 16 15 5 18 18 C 1.52999 * 110.71765 * 219.44677 * 16 15 5 19 19 C 1.53005 * 109.47275 * 291.15194 * 18 16 15 20 20 N 1.46492 * 109.47461 * 180.02562 * 19 18 16 21 21 C 1.36940 * 120.00187 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99886 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99920 * 179.97438 * 21 20 19 24 24 N 1.31615 * 120.00236 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99924 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47022 * 60.00330 * 25 23 21 27 27 H 1.48497 * 109.47299 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46904 * 300.00627 * 25 23 21 29 29 H 1.08999 * 109.47005 * 296.10243 * 1 2 3 30 30 H 1.09008 * 109.46757 * 56.09635 * 1 2 3 31 31 H 1.08998 * 109.47247 * 176.09853 * 1 2 3 32 32 H 1.09003 * 110.42181 * 86.20157 * 4 2 1 33 33 H 1.09006 * 110.29579 * 324.00059 * 4 2 1 34 34 H 1.07992 * 126.01813 * 359.97438 * 9 8 6 35 35 H 0.96703 * 113.99777 * 89.97644 * 12 11 10 36 36 H 1.08996 * 109.47660 * 265.45076 * 14 13 11 37 37 H 1.08997 * 109.47255 * 25.45848 * 14 13 11 38 38 H 1.09008 * 109.46809 * 145.45473 * 14 13 11 39 39 H 1.08995 * 109.88555 * 239.52956 * 15 5 4 40 40 H 1.08998 * 110.01424 * 118.42646 * 15 5 4 41 41 H 1.09006 * 109.46964 * 171.15862 * 18 16 15 42 42 H 1.08994 * 109.47401 * 51.15602 * 18 16 15 43 43 H 1.09002 * 109.46639 * 300.00312 * 19 18 16 44 44 H 1.08999 * 109.46796 * 60.00132 * 19 18 16 45 45 H 0.97009 * 120.00009 * 359.97438 * 20 19 18 46 46 H 0.97001 * 120.00012 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0901 -0.8074 -1.2002 5 7 3.4298 -1.2474 -0.7705 6 6 4.4511 -1.5691 -1.5890 7 8 5.5477 -1.8205 -1.1241 8 6 4.2417 -1.6160 -3.0369 9 6 3.0511 -1.4901 -3.6972 10 7 3.2931 -1.5910 -5.0034 11 6 4.5800 -1.7744 -5.2044 12 8 5.1736 -1.9169 -6.4109 13 7 5.2132 -1.7909 -4.0129 14 6 6.6510 -1.9641 -3.7914 15 6 3.4671 -1.2781 0.6989 16 6 2.0861 -0.8079 1.2023 17 1 1.4450 -1.6613 1.4230 18 6 2.2349 0.0876 2.4338 19 6 2.7236 -0.7498 3.6174 20 7 2.8656 0.1075 4.7967 21 6 3.2935 -0.4256 5.9833 22 1 3.5268 -1.4780 6.0495 23 6 3.4285 0.3870 7.1006 24 7 3.1448 1.6696 7.0198 25 14 4.0130 -0.3401 8.7191 26 1 5.3644 -0.9285 8.5380 27 1 4.0717 0.7280 9.7491 28 1 3.0671 -1.3979 9.1567 29 1 -0.3633 0.4521 0.9228 30 1 -0.3633 0.5733 -0.8530 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1643 -0.1733 -2.0837 33 1 1.4552 -1.6696 -1.4052 34 1 2.0847 -1.3368 -3.2404 35 1 5.4635 -1.0839 -6.8074 36 1 6.8652 -3.0156 -3.6006 37 1 7.1969 -1.6367 -4.6762 38 1 6.9606 -1.3685 -2.9325 39 1 4.2433 -0.6057 1.0642 40 1 3.6623 -2.2927 1.0460 41 1 1.2705 0.5333 2.6777 42 1 2.9571 0.8766 2.2242 43 1 2.0013 -1.5388 3.8270 44 1 3.6880 -1.1955 3.3735 45 1 2.6571 1.0530 4.7370 46 1 3.2388 2.2373 7.8007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104488003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:22 Heat of formation + Delta-G solvation = 8.172194 kcal Electronic energy + Delta-G solvation = -27122.077989 eV Core-core repulsion = 23241.923431 eV Total energy + Delta-G solvation = -3880.154559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.66483 -40.20609 -38.19440 -37.69277 -35.27218 -34.50310 -33.38791 -32.10172 -30.70400 -29.55312 -27.59392 -26.99301 -26.68050 -24.50515 -23.18019 -22.15011 -22.07538 -20.69696 -20.11879 -19.76170 -18.98629 -17.35759 -17.20275 -16.91753 -16.44260 -16.25339 -15.45364 -14.91355 -14.71695 -14.62105 -14.46891 -14.15364 -13.67941 -13.44118 -13.27701 -13.14446 -13.13512 -12.99681 -12.83675 -12.76595 -12.49401 -12.25897 -11.77731 -11.45580 -11.14424 -11.03759 -10.82622 -10.68940 -10.61957 -10.45671 -10.31340 -10.21718 -10.12071 -9.97550 -9.65008 -8.99259 -8.84888 -8.76206 -6.90433 -5.74861 -3.03396 0.82065 1.73419 2.23945 2.80158 2.99461 3.35917 3.45696 3.49755 3.50949 4.05285 4.25880 4.33668 4.51846 4.53793 4.64353 4.68139 4.82212 4.88441 5.04852 5.14180 5.17183 5.20449 5.31584 5.46030 5.51020 5.54357 5.59031 5.70280 5.74215 5.84214 5.93503 5.95388 5.99012 6.00060 6.08395 6.14514 6.27860 6.37073 6.38411 6.84428 6.88606 7.03575 7.21889 7.35732 7.71396 7.86581 8.44419 9.55253 10.13643 10.47877 11.48091 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.002341 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.939285 B =11959.741436 C =12957.104042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.089 3.911 5 N -0.603 5.603 6 C 0.606 3.394 7 O -0.542 6.542 8 C -0.071 4.071 9 C 0.042 3.958 10 N -0.487 5.487 11 C 0.394 3.606 12 O -0.439 6.439 13 N -0.428 5.428 14 C 0.071 3.929 15 C 0.115 3.885 16 C -0.089 4.089 17 H 0.089 0.911 18 C -0.115 4.115 19 C 0.151 3.849 20 N -0.734 5.734 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.195 0.805 35 H 0.404 0.596 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.383 0.617 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 -4.081 -27.234 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.034 4.034 5 N -0.335 5.335 6 C 0.395 3.605 7 O -0.421 6.421 8 C -0.187 4.187 9 C -0.112 4.112 10 N -0.216 5.216 11 C 0.095 3.905 12 O -0.240 6.240 13 N -0.121 5.121 14 C -0.071 4.071 15 C -0.006 4.006 16 C -0.109 4.109 17 H 0.107 0.893 18 C -0.153 4.153 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.212 0.788 35 H 0.262 0.738 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.450 -4.940 -27.537 27.981 hybrid contribution 1.149 0.298 1.286 1.750 sum 0.699 -4.642 -26.251 26.668 Atomic orbital electron populations 1.21707 0.93315 1.02269 1.02602 1.22484 0.96491 0.99595 0.93414 0.89267 1.22936 0.83178 0.98680 0.98588 1.48028 1.12051 1.65965 1.07477 1.16158 0.83471 0.77632 0.83274 1.90851 1.23411 1.50752 1.77047 1.20516 0.89752 1.17973 0.90463 1.23183 0.97934 1.01637 0.88433 1.70347 1.11536 1.21303 1.18403 1.20260 0.86084 1.03801 0.80348 1.84838 1.77294 1.35621 1.26242 1.45655 1.08992 1.51460 1.05999 1.22229 0.75792 1.04739 1.04357 1.22187 0.98741 1.02475 0.77235 1.22312 0.94807 0.98961 0.94815 0.89310 1.21739 1.02113 0.98052 0.93416 1.20687 0.97115 0.93248 0.86606 1.42357 1.80886 1.08409 1.06166 1.19194 1.36561 0.93664 0.87597 0.91259 1.24744 1.02532 0.95654 0.98168 1.69647 1.55234 1.03853 1.29620 0.86260 0.78620 0.77704 0.83577 1.21267 1.21691 1.21266 0.91440 0.92326 0.92242 0.89657 0.90431 0.78808 0.73824 0.89722 0.89422 0.87933 0.90337 0.90873 0.91170 0.91644 0.96414 0.96356 0.78325 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.32 37.16 0.35 -0.68 16 2 C -0.10 -0.87 3.10 -88.36 -0.27 -1.15 16 3 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 4 C 0.09 0.71 4.59 -2.42 -0.01 0.70 16 5 N -0.60 -6.86 3.33 -172.03 -0.57 -7.43 16 6 C 0.61 7.93 7.79 -12.99 -0.10 7.82 16 7 O -0.54 -8.71 15.47 5.16 0.08 -8.63 16 8 C -0.07 -0.80 6.85 -81.97 -0.56 -1.37 16 9 C 0.04 0.43 10.18 -17.50 -0.18 0.25 16 10 N -0.49 -5.53 11.22 -14.62 -0.16 -5.70 16 11 C 0.39 3.96 9.01 -89.59 -0.81 3.16 16 12 O -0.44 -3.15 13.46 -17.32 -0.23 -3.38 16 13 N -0.43 -4.38 3.20 -122.12 -0.39 -4.77 16 14 C 0.07 0.55 10.46 59.85 0.63 1.17 16 15 C 0.12 1.45 5.74 -3.06 -0.02 1.43 16 16 C -0.09 -1.00 2.42 -88.78 -0.21 -1.21 16 17 H 0.09 0.95 8.04 -51.93 -0.42 0.53 16 18 C -0.12 -1.69 4.72 -26.73 -0.13 -1.81 16 19 C 0.15 2.94 6.13 -4.04 -0.02 2.92 16 20 N -0.73 -18.65 5.60 -59.91 -0.34 -18.99 16 21 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 25 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.09 0.58 5.96 -51.93 -0.31 0.27 16 33 H 0.08 0.51 7.58 -51.93 -0.39 0.12 16 34 H 0.20 1.42 4.79 -52.49 -0.25 1.17 16 35 H 0.40 0.70 9.06 45.56 0.41 1.12 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.41 8.04 -51.93 -0.42 -0.01 16 38 H 0.10 0.92 6.95 -51.92 -0.36 0.56 16 39 H 0.08 1.13 7.73 -51.93 -0.40 0.73 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.00 8.00 -51.93 -0.42 0.59 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.37 7.58 -51.93 -0.39 -0.02 16 45 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -36.35 374.50 -8.04 -44.40 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.18 Total: 5.21 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.59 Total: 3.78 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -0.74 Total: -64.62 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.15 Total: -12.01 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.35 -8.04 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104488003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.569 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds