Wall clock time and date at job start Fri Apr 10 2020 18:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.91697 * 2 1 4 4 C 1.55120 * 111.16459 * 236.07007 * 2 1 3 5 5 N 1.47418 * 104.94558 * 205.13357 * 4 2 1 6 6 C 1.34777 * 125.65132 * 203.96547 * 5 4 2 7 7 O 1.21734 * 119.99911 * 174.30042 * 6 5 4 8 8 C 1.46372 * 119.99758 * 354.30327 * 6 5 4 9 9 C 1.36725 * 126.82668 * 353.09600 * 8 6 5 10 10 N 1.33223 * 107.96127 * 180.02562 * 9 8 6 11 11 C 1.31538 * 109.76371 * 359.97438 * 10 9 8 12 12 O 1.35207 * 125.49280 * 180.02562 * 11 10 9 13 13 N 1.34945 * 109.01475 * 359.72624 * 11 10 9 14 14 C 1.46498 * 126.54425 * 180.30107 * 13 11 10 15 15 C 1.47021 * 108.70408 * 24.00299 * 5 4 2 16 16 C 1.54330 * 107.27011 * 358.94278 * 15 5 4 17 17 H 1.08992 * 110.72107 * 96.34954 * 16 15 5 18 18 C 1.52999 * 110.71765 * 219.44677 * 16 15 5 19 19 C 1.53005 * 109.47275 * 291.15194 * 18 16 15 20 20 N 1.46492 * 109.47461 * 180.02562 * 19 18 16 21 21 C 1.36940 * 120.00187 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99886 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99920 * 179.97438 * 21 20 19 24 24 N 1.31615 * 120.00236 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99924 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47022 * 60.00330 * 25 23 21 27 27 H 1.48497 * 109.47299 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46904 * 300.00627 * 25 23 21 29 29 H 1.08999 * 109.47005 * 296.10243 * 1 2 3 30 30 H 1.09008 * 109.46757 * 56.09635 * 1 2 3 31 31 H 1.08998 * 109.47247 * 176.09853 * 1 2 3 32 32 H 1.09003 * 110.42181 * 86.20157 * 4 2 1 33 33 H 1.09006 * 110.29579 * 324.00059 * 4 2 1 34 34 H 1.07992 * 126.01813 * 359.97438 * 9 8 6 35 35 H 0.96703 * 113.99777 * 89.97644 * 12 11 10 36 36 H 1.08996 * 109.47660 * 265.45076 * 14 13 11 37 37 H 1.08997 * 109.47255 * 25.45848 * 14 13 11 38 38 H 1.09008 * 109.46809 * 145.45473 * 14 13 11 39 39 H 1.08995 * 109.88555 * 239.52956 * 15 5 4 40 40 H 1.08998 * 110.01424 * 118.42646 * 15 5 4 41 41 H 1.09006 * 109.46964 * 171.15862 * 18 16 15 42 42 H 1.08994 * 109.47401 * 51.15602 * 18 16 15 43 43 H 1.09002 * 109.46639 * 300.00312 * 19 18 16 44 44 H 1.08999 * 109.46796 * 60.00132 * 19 18 16 45 45 H 0.97009 * 120.00009 * 359.97438 * 20 19 18 46 46 H 0.97001 * 120.00012 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0901 -0.8074 -1.2002 5 7 3.4298 -1.2474 -0.7705 6 6 4.4511 -1.5691 -1.5890 7 8 5.5477 -1.8205 -1.1241 8 6 4.2417 -1.6160 -3.0369 9 6 3.0511 -1.4901 -3.6972 10 7 3.2931 -1.5910 -5.0034 11 6 4.5800 -1.7744 -5.2044 12 8 5.1736 -1.9169 -6.4109 13 7 5.2132 -1.7909 -4.0129 14 6 6.6510 -1.9641 -3.7914 15 6 3.4671 -1.2781 0.6989 16 6 2.0861 -0.8079 1.2023 17 1 1.4450 -1.6613 1.4230 18 6 2.2349 0.0876 2.4338 19 6 2.7236 -0.7498 3.6174 20 7 2.8656 0.1075 4.7967 21 6 3.2935 -0.4256 5.9833 22 1 3.5268 -1.4780 6.0495 23 6 3.4285 0.3870 7.1006 24 7 3.1448 1.6696 7.0198 25 14 4.0130 -0.3401 8.7191 26 1 5.3644 -0.9285 8.5380 27 1 4.0717 0.7280 9.7491 28 1 3.0671 -1.3979 9.1567 29 1 -0.3633 0.4521 0.9228 30 1 -0.3633 0.5733 -0.8530 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1643 -0.1733 -2.0837 33 1 1.4552 -1.6696 -1.4052 34 1 2.0847 -1.3368 -3.2404 35 1 5.4635 -1.0839 -6.8074 36 1 6.8652 -3.0156 -3.6006 37 1 7.1969 -1.6367 -4.6762 38 1 6.9606 -1.3685 -2.9325 39 1 4.2433 -0.6057 1.0642 40 1 3.6623 -2.2927 1.0460 41 1 1.2705 0.5333 2.6777 42 1 2.9571 0.8766 2.2242 43 1 2.0013 -1.5388 3.8270 44 1 3.6880 -1.1955 3.3735 45 1 2.6571 1.0530 4.7370 46 1 3.2388 2.2373 7.8007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104488003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:22 Heat of formation + Delta-G solvation = -20.637045 kcal Electronic energy + Delta-G solvation = -27123.327252 eV Core-core repulsion = 23241.923431 eV Total energy + Delta-G solvation = -3881.403821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.41752 -41.11534 -39.13575 -38.35442 -36.90010 -35.33563 -34.63282 -33.45629 -32.01439 -30.72505 -28.41797 -28.09933 -27.43100 -25.98855 -24.49530 -23.37175 -22.81506 -21.84187 -21.01552 -20.64310 -19.63896 -19.14885 -18.15575 -17.84914 -17.34333 -17.08975 -16.65077 -16.29884 -15.81434 -15.61956 -15.39031 -15.22777 -15.14570 -14.86342 -14.41824 -14.22101 -13.87799 -13.79728 -13.67327 -13.60338 -13.37144 -13.08345 -13.03778 -12.82717 -12.61814 -12.44751 -12.27078 -12.13151 -11.88741 -11.62643 -11.55660 -11.45673 -11.14855 -11.06814 -10.95414 -10.91407 -9.88104 -9.57861 -9.00036 -7.95815 -5.24594 0.03266 1.00952 1.46423 1.47733 1.49723 1.55829 1.95692 2.10709 2.55666 2.75485 3.24547 3.37554 3.49382 3.63402 3.70544 3.75855 3.85880 4.13012 4.19170 4.21860 4.26881 4.32906 4.45236 4.52532 4.55061 4.56858 4.68062 4.74410 4.81423 4.85018 4.90388 4.92982 5.07654 5.16240 5.21461 5.27545 5.32999 5.38399 5.46427 5.49715 5.50189 5.59650 6.27180 6.32516 6.49756 6.62764 6.91942 7.32984 8.10136 8.32715 9.27577 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.002341 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.939285 B =11959.741436 C =12957.104042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.084 0.916 4 C 0.087 3.913 5 N -0.601 5.601 6 C 0.602 3.398 7 O -0.585 6.585 8 C -0.097 4.097 9 C 0.058 3.942 10 N -0.513 5.513 11 C 0.405 3.595 12 O -0.440 6.440 13 N -0.434 5.434 14 C 0.070 3.930 15 C 0.116 3.884 16 C -0.079 4.079 17 H 0.102 0.898 18 C -0.100 4.100 19 C 0.148 3.852 20 N -0.749 5.749 21 C -0.248 4.248 22 H 0.073 0.927 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.974 3.026 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.276 1.276 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.220 0.780 35 H 0.429 0.571 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.023 0.977 44 H 0.013 0.987 45 H 0.374 0.626 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 -4.765 -29.162 29.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.102 0.898 4 C -0.034 4.034 5 N -0.332 5.332 6 C 0.392 3.608 7 O -0.467 6.467 8 C -0.213 4.213 9 C -0.096 4.096 10 N -0.242 5.242 11 C 0.105 3.895 12 O -0.245 6.245 13 N -0.127 5.127 14 C -0.072 4.072 15 C -0.006 4.006 16 C -0.099 4.099 17 H 0.120 0.880 18 C -0.138 4.138 19 C 0.022 3.978 20 N -0.391 5.391 21 C -0.380 4.380 22 H 0.091 0.909 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.802 3.198 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.202 1.202 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.237 0.763 35 H 0.291 0.709 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.031 0.969 45 H 0.206 0.794 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.629 -5.634 -29.513 30.090 hybrid contribution 1.546 0.486 1.763 2.395 sum -0.083 -5.148 -27.750 28.224 Atomic orbital electron populations 1.21702 0.91602 1.03317 1.02935 1.22444 0.97714 0.98911 0.92005 0.89778 1.23203 0.81538 0.99876 0.98797 1.48066 1.13104 1.65299 1.06733 1.16464 0.83101 0.77060 0.84176 1.90819 1.25128 1.52910 1.77885 1.20364 0.90795 1.20403 0.89693 1.23593 0.98377 0.99699 0.87974 1.70393 1.12257 1.22711 1.18886 1.20401 0.86059 1.02048 0.80988 1.84800 1.77030 1.37645 1.25006 1.45810 1.09593 1.51361 1.05925 1.22327 0.75164 1.04366 1.05303 1.22045 0.98861 1.01265 0.78437 1.22204 0.94323 0.99118 0.94212 0.87975 1.21569 1.01639 0.97635 0.92991 1.20879 0.97024 0.93404 0.86478 1.42606 1.80727 1.08621 1.07173 1.19604 1.35636 0.93944 0.88809 0.90883 1.25588 1.03494 0.96143 1.01677 1.69802 1.56830 1.05076 1.30271 0.85208 0.78333 0.76965 0.79252 1.20621 1.21940 1.20179 0.92507 0.90418 0.91081 0.87764 0.87894 0.76338 0.70901 0.90021 0.86061 0.89658 0.93000 0.91856 0.90694 0.92672 0.95869 0.96939 0.79411 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.32 71.98 0.67 -0.88 16 2 C -0.09 -1.38 3.10 -9.33 -0.03 -1.41 16 3 H 0.08 1.39 8.05 -2.39 -0.02 1.37 16 4 C 0.09 1.16 4.59 86.93 0.40 1.56 16 5 N -0.60 -13.26 3.33 -816.40 -2.72 -15.98 16 6 C 0.60 15.80 7.79 86.36 0.67 16.47 16 7 O -0.59 -19.66 15.47 -4.46 -0.07 -19.73 16 8 C -0.10 -2.11 6.85 39.80 0.27 -1.84 16 9 C 0.06 1.04 10.18 84.13 0.86 1.90 16 10 N -0.51 -10.51 11.22 -313.65 -3.52 -14.03 16 11 C 0.40 7.34 9.01 179.99 1.62 8.96 16 12 O -0.44 -5.20 13.46 -84.88 -1.14 -6.34 16 13 N -0.43 -8.42 3.20 -652.00 -2.09 -10.51 16 14 C 0.07 1.05 10.46 127.77 1.34 2.38 16 15 C 0.12 2.95 5.74 86.73 0.50 3.45 16 16 C -0.08 -1.68 2.42 -9.60 -0.02 -1.71 16 17 H 0.10 1.96 8.04 -2.39 -0.02 1.94 16 18 C -0.10 -2.93 4.72 30.60 0.14 -2.78 16 19 C 0.15 5.85 6.13 86.38 0.53 6.37 16 20 N -0.75 -38.72 5.60 -343.46 -1.92 -40.64 16 21 C -0.25 -14.19 9.99 84.03 0.84 -13.35 16 22 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 23 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 24 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 25 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 26 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 32 H 0.10 1.06 5.96 -2.39 -0.01 1.05 16 33 H 0.10 0.94 7.58 -2.38 -0.02 0.92 16 34 H 0.22 2.44 4.79 -2.91 -0.01 2.42 16 35 H 0.43 0.25 9.06 -74.06 -0.67 -0.42 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.12 0.90 8.04 -2.39 -0.02 0.88 16 38 H 0.08 1.60 6.95 -2.38 -0.02 1.59 16 39 H 0.05 1.58 7.73 -2.39 -0.02 1.57 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.05 1.72 8.00 -2.39 -0.02 1.71 16 43 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.01 0.52 7.58 -2.39 -0.02 0.50 16 45 H 0.37 20.37 7.67 -92.70 -0.71 19.66 16 46 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -80.00 374.50 -1.26 -81.26 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -0.37 Total: 21.73 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 8.25 Total: 15.11 kcal Atomic # 7 Polarization: -130.88 SS G_CDS: -9.97 Total: -140.84 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -1.21 Total: -26.07 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -80.00 -1.26 -81.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104488003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.620 kcal (2) G-P(sol) polarization free energy of solvation -79.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds