Wall clock time and date at job start Fri Apr 10 2020 18:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47491 * 2 1 4 4 C 1.35361 * 126.38584 * 84.99336 * 3 2 1 5 5 C 1.41503 * 105.50118 * 179.97438 * 4 3 2 6 6 C 1.47713 * 126.52091 * 180.02562 * 5 4 3 7 7 O 1.21579 * 119.99684 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00322 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00065 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.47354 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.55410 * 304.87420 * 10 9 8 12 12 C 1.53292 * 109.51354 * 184.74649 * 10 9 8 13 13 N 1.47165 * 108.41376 * 187.79598 * 12 10 9 14 14 C 1.36935 * 120.99578 * 230.54471 * 13 12 10 15 15 H 1.07992 * 120.00186 * 153.32389 * 14 13 12 16 16 C 1.38816 * 119.99602 * 333.33361 * 14 13 12 17 17 N 1.31616 * 120.00208 * 343.52858 * 16 14 13 18 18 Si 1.86797 * 119.99898 * 163.53345 * 16 14 13 19 19 H 1.48500 * 109.47409 * 59.99733 * 18 16 14 20 20 H 1.48501 * 109.46973 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47195 * 299.99374 * 18 16 14 22 22 C 1.47151 * 118.02621 * 50.46989 * 13 12 10 23 23 C 1.53294 * 108.41779 * 309.52979 * 22 13 12 24 24 O 1.42966 * 109.22198 * 52.28429 * 23 22 13 25 25 N 1.31807 * 106.96561 * 0.26015 * 5 4 3 26 26 N 1.28471 * 110.07143 * 359.56051 * 25 5 4 27 27 H 0.97000 * 124.88717 * 180.19696 * 26 25 5 28 28 H 1.09004 * 109.47008 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46949 * 300.00421 * 1 2 3 30 30 H 1.09002 * 109.46797 * 60.00398 * 1 2 3 31 31 H 1.09003 * 109.47524 * 239.99123 * 2 1 3 32 32 H 1.09005 * 109.46971 * 120.00089 * 2 1 3 33 33 H 1.07995 * 127.25208 * 359.97438 * 4 3 2 34 34 H 0.97002 * 120.00410 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47415 * 60.00089 * 9 8 6 36 36 H 1.08998 * 109.47371 * 299.99944 * 9 8 6 37 37 H 1.08997 * 109.47587 * 180.12462 * 11 10 9 38 38 H 1.09005 * 109.47135 * 300.12598 * 11 10 9 39 39 H 1.09003 * 109.47554 * 60.12280 * 11 10 9 40 40 H 1.09007 * 109.68283 * 307.49741 * 12 10 9 41 41 H 1.09002 * 109.68326 * 68.05081 * 12 10 9 42 42 H 0.96998 * 120.00577 * 180.02562 * 17 16 14 43 43 H 1.09006 * 109.68282 * 189.78626 * 22 13 12 44 44 H 1.09005 * 109.68198 * 69.27128 * 22 13 12 45 45 H 1.08997 * 109.51621 * 172.20381 * 23 22 13 46 46 H 1.08999 * 109.51217 * 292.30900 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2105 2.2095 1.0856 5 6 2.6933 3.4410 0.5831 6 6 3.0435 4.6372 1.3758 7 8 2.9249 4.6207 2.5857 8 7 3.4944 5.7468 0.7580 9 6 3.8411 6.9333 1.5443 10 6 4.3227 8.0432 0.6075 11 6 5.4791 7.5242 -0.2493 12 6 4.7973 9.2424 1.4360 13 7 5.0763 10.3594 0.5193 14 6 6.2637 11.0391 0.5769 15 1 6.6485 11.5295 -0.3050 16 6 6.9728 11.0977 1.7688 17 7 6.3785 10.7954 2.9036 18 14 8.7703 11.6056 1.7622 19 1 8.8957 12.9754 1.2025 20 1 9.2945 11.5892 3.1515 21 1 9.5498 10.6565 0.9274 22 6 4.0421 10.7232 -0.4622 23 6 3.6042 9.4518 -1.1982 24 8 3.2467 8.4528 -0.2400 25 7 2.7664 3.3196 -0.7273 26 7 2.3895 2.1441 -1.0829 27 1 2.3616 1.8235 -1.9980 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.0234 1.9529 2.1178 34 1 3.5887 5.7602 -0.2073 35 1 4.6345 6.6834 2.2487 36 1 2.9632 7.2754 2.0923 37 1 5.8225 8.3164 -0.9145 38 1 6.2990 7.2120 0.3976 39 1 5.1397 6.6743 -0.8414 40 1 4.0184 9.5328 2.1412 41 1 5.7046 8.9776 1.9789 42 1 6.8739 10.8366 3.7366 43 1 4.4493 11.4391 -1.1763 44 1 3.1871 11.1630 0.0514 45 1 2.7443 9.6746 -1.8299 46 1 4.4252 9.0877 -1.8159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107757276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:59 Heat of formation + Delta-G solvation = 12.755092 kcal Electronic energy + Delta-G solvation = -27658.024631 eV Core-core repulsion = 23778.068802 eV Total energy + Delta-G solvation = -3879.955829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.85702 -39.54440 -38.53568 -34.90670 -34.65249 -34.27056 -32.22288 -31.43319 -31.20760 -29.57722 -27.90663 -26.62447 -25.77346 -24.15104 -23.47036 -23.16360 -21.27493 -21.08997 -19.90598 -18.61770 -17.89792 -17.18971 -16.79798 -16.02457 -15.75456 -15.35886 -15.04660 -14.82228 -14.53665 -14.37545 -14.09687 -13.98094 -13.79614 -13.53712 -13.44534 -12.99176 -12.83879 -12.68219 -12.39865 -12.03236 -11.86323 -11.61982 -11.53394 -11.15533 -11.00494 -10.94912 -10.77514 -10.64883 -10.28254 -10.23540 -10.06353 -9.88117 -9.54664 -9.49447 -9.17719 -8.99507 -8.73284 -8.51099 -6.70651 -5.81967 -3.25715 1.50826 1.94148 2.62890 3.35216 3.39542 3.42860 3.43195 3.53968 4.23514 4.31097 4.35449 4.46015 4.55638 4.80793 5.05761 5.15878 5.19958 5.32494 5.37291 5.43872 5.47801 5.54385 5.57343 5.71889 5.73885 5.77459 5.96758 5.98779 6.07001 6.14418 6.18615 6.22645 6.35672 6.52116 6.62883 6.71991 6.76839 6.81260 6.86807 7.11063 7.50194 7.57343 7.72769 7.86667 7.93817 8.35816 8.41491 9.13380 9.76391 10.34081 11.26035 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024307 B = 0.002637 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.662182 B =10615.890278 C =11025.715354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.012 3.988 4 C -0.175 4.175 5 C -0.004 4.004 6 C 0.597 3.403 7 O -0.537 6.537 8 N -0.703 5.703 9 C 0.138 3.862 10 C 0.079 3.921 11 C -0.162 4.162 12 C 0.160 3.840 13 N -0.590 5.590 14 C -0.255 4.255 15 H 0.067 0.933 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.383 6.383 25 N -0.258 5.258 26 N -0.382 5.382 27 H 0.443 0.557 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.408 0.592 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.030 0.970 41 H 0.097 0.903 42 H 0.256 0.744 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.079 0.921 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 -20.547 -9.284 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.203 4.203 5 C -0.165 4.165 6 C 0.380 3.620 7 O -0.412 6.412 8 N -0.354 5.354 9 C 0.015 3.985 10 C 0.037 3.963 11 C -0.220 4.220 12 C 0.033 3.967 13 N -0.314 5.314 14 C -0.384 4.384 15 H 0.085 0.915 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.733 3.267 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.303 6.303 25 N -0.094 5.094 26 N -0.096 5.096 27 H 0.287 0.713 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.179 0.821 34 H 0.244 0.756 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.115 0.885 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.098 0.902 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.145 -19.941 -9.121 23.759 hybrid contribution 0.988 -0.091 -0.287 1.033 sum -8.157 -20.033 -9.408 23.587 Atomic orbital electron populations 1.21791 0.93996 1.02238 1.02764 1.20111 0.96454 0.88688 1.03966 1.21436 1.05623 0.96904 0.87393 1.21512 1.06671 0.92334 0.99813 1.22037 1.07695 0.96980 0.89766 1.16899 0.77449 0.81274 0.86362 1.90798 1.54293 1.83013 1.13131 1.45891 1.65262 1.12618 1.11678 1.21408 1.01284 0.82573 0.93246 1.22546 0.86914 0.95268 0.91525 1.22206 0.98494 1.00546 1.00739 1.21299 1.00814 0.84156 0.90402 1.43981 1.14610 1.34187 1.38629 1.19107 0.95773 1.29343 0.94163 0.91515 1.25048 0.99063 1.00360 0.95036 1.69996 1.35041 1.52425 0.97077 0.86357 0.85110 0.78538 0.76687 1.20882 1.21544 1.21002 1.21599 0.92617 0.94460 0.93028 1.23029 0.99343 0.89887 0.90931 1.87836 1.35532 1.57821 1.49086 1.73588 1.18215 1.02347 1.15204 1.43302 1.47881 1.08575 1.09809 0.71296 0.91748 0.91771 0.92688 0.90692 0.89003 0.82051 0.75598 0.89751 0.90570 0.90812 0.91864 0.93843 0.95171 0.88539 0.93362 0.92096 0.95654 0.90249 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.90 37.16 0.37 -0.34 16 2 C -0.05 -0.26 6.49 -27.88 -0.18 -0.44 16 3 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -2.05 10.73 -39.36 -0.42 -2.47 16 5 C 0.00 -0.05 7.13 -82.76 -0.59 -0.64 16 6 C 0.60 10.07 7.82 -12.39 -0.10 9.97 16 7 O -0.54 -10.55 16.93 5.30 0.09 -10.46 16 8 N -0.70 -11.49 5.19 -61.29 -0.32 -11.81 16 9 C 0.14 2.51 4.85 -4.04 -0.02 2.49 16 10 C 0.08 1.52 0.78 -90.47 -0.07 1.45 16 11 C -0.16 -2.91 7.86 37.15 0.29 -2.62 16 12 C 0.16 3.79 4.11 -3.53 -0.01 3.77 16 13 N -0.59 -14.57 2.57 -171.81 -0.44 -15.01 16 14 C -0.25 -6.83 9.65 -15.06 -0.15 -6.97 16 15 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 16 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 17 N -0.90 -25.85 11.14 55.49 0.62 -25.23 16 18 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.11 2.29 6.73 -3.53 -0.02 2.26 16 23 C 0.05 0.82 6.60 37.31 0.25 1.07 16 24 O -0.38 -7.39 10.17 -35.23 -0.36 -7.75 16 25 N -0.26 -3.19 11.92 33.42 0.40 -2.80 16 26 N -0.38 -3.29 6.83 33.50 0.23 -3.07 16 27 H 0.44 2.14 8.96 -190.44 -1.71 0.43 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.41 6.27 6.73 -40.82 -0.27 6.00 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.07 1.43 6.12 -51.93 -0.32 1.11 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.68 6.59 -51.93 -0.34 0.33 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 2.51 6.16 -51.93 -0.32 2.19 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.05 0.83 6.26 -51.93 -0.32 0.50 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -32.88 372.32 -8.80 -41.68 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.32 Total: 5.29 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.28 Total: 7.13 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.49 Total: -57.91 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.27 Total: -18.21 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.88 -8.80 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107757276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.438 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds