Wall clock time and date at job start Fri Apr 10 2020 18:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47491 * 2 1 4 4 C 1.35361 * 126.38584 * 84.99336 * 3 2 1 5 5 C 1.41503 * 105.50118 * 179.97438 * 4 3 2 6 6 C 1.47713 * 126.52091 * 180.02562 * 5 4 3 7 7 O 1.21579 * 119.99684 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00322 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00065 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.47354 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.55410 * 304.87420 * 10 9 8 12 12 C 1.53292 * 109.51354 * 184.74649 * 10 9 8 13 13 N 1.47165 * 108.41376 * 187.79598 * 12 10 9 14 14 C 1.36935 * 120.99578 * 230.54471 * 13 12 10 15 15 H 1.07992 * 120.00186 * 153.32389 * 14 13 12 16 16 C 1.38816 * 119.99602 * 333.33361 * 14 13 12 17 17 N 1.31616 * 120.00208 * 343.52858 * 16 14 13 18 18 Si 1.86797 * 119.99898 * 163.53345 * 16 14 13 19 19 H 1.48500 * 109.47409 * 59.99733 * 18 16 14 20 20 H 1.48501 * 109.46973 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47195 * 299.99374 * 18 16 14 22 22 C 1.47151 * 118.02621 * 50.46989 * 13 12 10 23 23 C 1.53294 * 108.41779 * 309.52979 * 22 13 12 24 24 O 1.42966 * 109.22198 * 52.28429 * 23 22 13 25 25 N 1.31807 * 106.96561 * 0.26015 * 5 4 3 26 26 N 1.28471 * 110.07143 * 359.56051 * 25 5 4 27 27 H 0.97000 * 124.88717 * 180.19696 * 26 25 5 28 28 H 1.09004 * 109.47008 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46949 * 300.00421 * 1 2 3 30 30 H 1.09002 * 109.46797 * 60.00398 * 1 2 3 31 31 H 1.09003 * 109.47524 * 239.99123 * 2 1 3 32 32 H 1.09005 * 109.46971 * 120.00089 * 2 1 3 33 33 H 1.07995 * 127.25208 * 359.97438 * 4 3 2 34 34 H 0.97002 * 120.00410 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47415 * 60.00089 * 9 8 6 36 36 H 1.08998 * 109.47371 * 299.99944 * 9 8 6 37 37 H 1.08997 * 109.47587 * 180.12462 * 11 10 9 38 38 H 1.09005 * 109.47135 * 300.12598 * 11 10 9 39 39 H 1.09003 * 109.47554 * 60.12280 * 11 10 9 40 40 H 1.09007 * 109.68283 * 307.49741 * 12 10 9 41 41 H 1.09002 * 109.68326 * 68.05081 * 12 10 9 42 42 H 0.96998 * 120.00577 * 180.02562 * 17 16 14 43 43 H 1.09006 * 109.68282 * 189.78626 * 22 13 12 44 44 H 1.09005 * 109.68198 * 69.27128 * 22 13 12 45 45 H 1.08997 * 109.51621 * 172.20381 * 23 22 13 46 46 H 1.08999 * 109.51217 * 292.30900 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2105 2.2095 1.0856 5 6 2.6933 3.4410 0.5831 6 6 3.0435 4.6372 1.3758 7 8 2.9249 4.6207 2.5857 8 7 3.4944 5.7468 0.7580 9 6 3.8411 6.9333 1.5443 10 6 4.3227 8.0432 0.6075 11 6 5.4791 7.5242 -0.2493 12 6 4.7973 9.2424 1.4360 13 7 5.0763 10.3594 0.5193 14 6 6.2637 11.0391 0.5769 15 1 6.6485 11.5295 -0.3050 16 6 6.9728 11.0977 1.7688 17 7 6.3785 10.7954 2.9036 18 14 8.7703 11.6056 1.7622 19 1 8.8957 12.9754 1.2025 20 1 9.2945 11.5892 3.1515 21 1 9.5498 10.6565 0.9274 22 6 4.0421 10.7232 -0.4622 23 6 3.6042 9.4518 -1.1982 24 8 3.2467 8.4528 -0.2400 25 7 2.7664 3.3196 -0.7273 26 7 2.3895 2.1441 -1.0829 27 1 2.3616 1.8235 -1.9980 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.0234 1.9529 2.1178 34 1 3.5887 5.7602 -0.2073 35 1 4.6345 6.6834 2.2487 36 1 2.9632 7.2754 2.0923 37 1 5.8225 8.3164 -0.9145 38 1 6.2990 7.2120 0.3976 39 1 5.1397 6.6743 -0.8414 40 1 4.0184 9.5328 2.1412 41 1 5.7046 8.9776 1.9789 42 1 6.8739 10.8366 3.7366 43 1 4.4493 11.4391 -1.1763 44 1 3.1871 11.1630 0.0514 45 1 2.7443 9.6746 -1.8299 46 1 4.4252 9.0877 -1.8159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107757276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:58 Heat of formation + Delta-G solvation = -10.887383 kcal Electronic energy + Delta-G solvation = -27659.049846 eV Core-core repulsion = 23778.068802 eV Total energy + Delta-G solvation = -3880.981044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.70758 -41.05326 -40.02502 -36.55729 -35.96691 -35.19406 -33.43419 -33.20034 -32.62385 -30.29469 -29.58105 -28.16005 -27.53489 -25.04559 -24.79975 -24.48975 -22.75818 -22.04545 -21.17755 -20.25081 -18.95657 -18.62711 -18.14454 -17.44856 -16.97826 -16.78870 -16.68227 -16.10690 -15.82032 -15.55805 -15.41800 -15.27209 -15.16927 -14.82332 -14.66728 -14.45410 -14.14974 -13.95849 -13.47609 -13.28824 -13.18428 -12.92889 -12.75606 -12.54097 -12.48821 -12.43861 -12.17824 -12.08272 -11.95859 -11.85470 -11.72461 -11.38388 -11.09650 -10.74640 -10.51768 -10.49273 -10.10413 -9.96147 -8.70534 -7.88482 -5.35790 0.48259 1.10833 1.46862 1.49070 1.55941 1.83884 2.20338 2.32727 2.49224 2.79052 3.25594 3.36166 3.50318 3.69152 3.89592 4.00195 4.03386 4.09834 4.33751 4.42047 4.44007 4.46171 4.53498 4.55628 4.62592 4.70188 4.71913 4.78435 4.83105 4.95835 5.05253 5.09917 5.11163 5.20580 5.21643 5.28423 5.33127 5.34119 5.42363 5.53836 5.62184 6.09922 6.30293 6.37256 6.43419 6.85725 7.07689 7.11687 7.76840 8.31570 9.17273 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024307 B = 0.002637 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.662182 B =10615.890278 C =11025.715354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C 0.038 3.962 4 C -0.200 4.200 5 C -0.034 4.034 6 C 0.595 3.405 7 O -0.574 6.574 8 N -0.695 5.695 9 C 0.147 3.853 10 C 0.094 3.906 11 C -0.152 4.152 12 C 0.168 3.832 13 N -0.607 5.607 14 C -0.260 4.260 15 H 0.074 0.926 16 C -0.050 4.050 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.275 1.275 20 H -0.297 1.297 21 H -0.276 1.276 22 C 0.103 3.897 23 C 0.052 3.948 24 O -0.387 6.387 25 N -0.267 5.267 26 N -0.361 5.361 27 H 0.462 0.538 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.161 0.839 34 H 0.415 0.585 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.071 0.929 40 H -0.005 1.005 41 H 0.069 0.931 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.013 0.987 45 H 0.116 0.884 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 -22.800 -12.235 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.089 4.089 4 C -0.228 4.228 5 C -0.193 4.193 6 C 0.381 3.619 7 O -0.452 6.452 8 N -0.346 5.346 9 C 0.023 3.977 10 C 0.053 3.947 11 C -0.210 4.210 12 C 0.041 3.959 13 N -0.331 5.331 14 C -0.390 4.390 15 H 0.091 0.909 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.795 3.205 19 H -0.201 1.201 20 H -0.223 1.223 21 H -0.201 1.201 22 C -0.023 4.023 23 C -0.026 4.026 24 O -0.307 6.307 25 N -0.105 5.105 26 N -0.078 5.078 27 H 0.310 0.690 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.179 0.821 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.013 0.987 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.031 0.969 45 H 0.134 0.866 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.378 -22.198 -12.147 26.986 hybrid contribution 0.957 0.584 0.559 1.252 sum -8.421 -21.614 -11.589 25.930 Atomic orbital electron populations 1.21789 0.93698 1.03233 1.02022 1.20298 0.96489 0.86228 1.05905 1.21877 1.03053 0.97886 0.86082 1.21682 1.07927 0.92221 1.00964 1.21686 1.10311 0.96725 0.90587 1.17295 0.76483 0.81905 0.86198 1.90766 1.55833 1.83768 1.14835 1.45721 1.65233 1.11938 1.11715 1.21129 1.00382 0.83177 0.93036 1.22193 0.87641 0.93577 0.91294 1.22098 0.97502 1.01085 1.00303 1.21052 0.98425 0.85878 0.90498 1.44229 1.15135 1.34535 1.39172 1.19464 0.96583 1.28718 0.94247 0.90879 1.25814 1.02831 1.01135 0.94748 1.70169 1.36326 1.54232 0.97448 0.85341 0.80441 0.78492 0.76180 1.20072 1.22316 1.20146 1.21808 0.91295 0.96605 0.92551 1.23116 1.01361 0.87687 0.90388 1.87845 1.35482 1.58110 1.49224 1.73495 1.18722 1.04013 1.14223 1.43406 1.45956 1.07467 1.10978 0.68994 0.89923 0.93244 0.92755 0.87828 0.88021 0.82148 0.74765 0.90469 0.92072 0.91781 0.92449 0.90999 0.98670 0.91313 0.94016 0.90869 0.96894 0.86569 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.90 71.98 0.71 -0.26 16 2 C -0.05 -0.31 6.49 29.85 0.19 -0.12 16 3 C 0.04 0.55 6.48 41.40 0.27 0.82 16 4 C -0.20 -4.52 10.73 22.41 0.24 -4.28 16 5 C -0.03 -0.94 7.13 42.46 0.30 -0.64 16 6 C 0.60 20.49 7.82 86.75 0.68 21.17 16 7 O -0.57 -23.49 16.93 -3.96 -0.07 -23.56 16 8 N -0.69 -22.77 5.19 -466.09 -2.42 -25.19 16 9 C 0.15 5.52 4.85 86.38 0.42 5.94 16 10 C 0.09 3.67 0.78 -10.70 -0.01 3.66 16 11 C -0.15 -5.33 7.86 71.98 0.57 -4.76 16 12 C 0.17 8.30 4.11 86.35 0.35 8.65 16 13 N -0.61 -30.35 2.57 -697.50 -1.79 -32.14 16 14 C -0.26 -14.06 9.65 84.03 0.81 -13.25 16 15 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 16 C -0.05 -2.76 4.95 84.86 0.42 -2.34 16 17 N -0.94 -55.70 11.14 21.65 0.24 -55.46 16 18 Si 0.97 44.60 29.58 68.60 2.03 46.63 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 C 0.10 4.23 6.73 86.35 0.58 4.82 16 23 C 0.05 1.74 6.60 72.08 0.48 2.21 16 24 O -0.39 -14.53 10.17 -148.98 -1.52 -16.04 16 25 N -0.27 -6.15 11.92 -48.17 -0.57 -6.72 16 26 N -0.36 -5.22 6.83 -47.93 -0.33 -5.54 16 27 H 0.46 2.77 8.96 -219.99 -1.97 0.80 16 28 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.41 12.29 6.73 -92.71 -0.62 11.67 16 35 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.45 16 37 H 0.06 2.38 6.12 -2.39 -0.01 2.37 16 38 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.07 2.09 6.59 -2.39 -0.02 2.08 16 40 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 41 H 0.07 3.76 6.16 -2.39 -0.01 3.75 16 42 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 43 H 0.07 2.80 7.96 -2.38 -0.02 2.78 16 44 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 45 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.06 1.90 6.26 -2.39 -0.01 1.88 16 Total: -1.00 -73.84 372.32 0.01 -73.83 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -1.58 Total: 22.58 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 6.02 Total: 21.62 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -4.87 Total: -125.06 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.58 Total: -39.60 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -73.84 0.01 -73.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107757276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.940 kcal (2) G-P(sol) polarization free energy of solvation -73.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds