Wall clock time and date at job start Fri Apr 10 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37015 * 125.65084 * 2 1 4 4 C 1.35142 * 107.87572 * 179.97438 * 3 2 1 5 5 C 1.46659 * 126.37599 * 179.73610 * 4 3 2 6 6 O 1.21710 * 119.99942 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00251 * 0.02602 * 5 4 3 8 8 C 1.46499 * 120.00442 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47539 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.49812 * 305.06882 * 9 8 7 11 11 C 1.53042 * 109.50028 * 184.99843 * 9 8 7 12 12 C 1.53035 * 109.54000 * 178.68426 * 11 9 8 13 13 C 1.53196 * 109.31331 * 61.36413 * 12 11 9 14 14 N 1.46921 * 108.77656 * 305.36879 * 13 12 11 15 15 C 1.36936 * 120.63214 * 233.58659 * 14 13 12 16 16 H 1.07996 * 120.00874 * 151.83410 * 15 14 13 17 17 C 1.38822 * 119.99642 * 331.83078 * 15 14 13 18 18 N 1.31614 * 119.99796 * 343.07646 * 17 15 14 19 19 Si 1.86799 * 119.99809 * 163.07456 * 17 15 14 20 20 H 1.48502 * 109.47019 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46956 * 120.00153 * 19 17 15 22 22 H 1.48496 * 109.47371 * 240.00016 * 19 17 15 23 23 C 1.46927 * 118.74312 * 53.60524 * 14 13 12 24 24 N 1.39837 * 107.24708 * 0.02562 * 4 3 2 25 25 C 1.46502 * 126.18271 * 179.97438 * 24 4 3 26 26 C 1.34623 * 125.65247 * 179.97438 * 2 1 3 27 27 O 1.21719 * 125.72482 * 0.04352 * 26 2 1 28 28 H 1.08998 * 109.46868 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47251 * 120.02150 * 1 2 3 30 30 H 1.08999 * 109.46625 * 240.02651 * 1 2 3 31 31 H 1.08003 * 126.06407 * 0.02562 * 3 2 1 32 32 H 0.96997 * 119.99897 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.47281 * 300.00083 * 8 7 5 34 34 H 1.08997 * 109.47176 * 59.99849 * 8 7 5 35 35 H 1.08994 * 109.45894 * 298.70804 * 11 9 8 36 36 H 1.08998 * 109.45692 * 58.67789 * 11 9 8 37 37 H 1.09001 * 109.49912 * 181.31810 * 12 11 9 38 38 H 1.09002 * 109.49958 * 301.38559 * 12 11 9 39 39 H 1.09001 * 109.58113 * 65.15282 * 13 12 11 40 40 H 1.08996 * 109.59019 * 185.57789 * 13 12 11 41 41 H 0.97005 * 119.99779 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.59031 * 186.60767 * 23 14 13 43 43 H 1.09002 * 109.58451 * 66.17630 * 23 14 13 44 44 H 1.09001 * 109.46906 * 89.99717 * 25 24 4 45 45 H 1.08999 * 109.47024 * 209.99913 * 25 24 4 46 46 H 1.08995 * 109.47192 * 329.99951 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7008 0.0006 5 6 4.7393 1.5597 -0.0047 6 8 5.8498 1.0617 -0.0040 7 7 4.6020 2.9004 -0.0102 8 6 5.7894 3.7584 -0.0149 9 6 5.3581 5.2263 -0.0214 10 1 4.6886 5.4050 -0.8627 11 6 6.5928 6.1210 -0.1519 12 6 6.1598 7.5883 -0.1915 13 6 5.4435 7.9406 1.1161 14 7 4.3411 6.9915 1.3219 15 6 3.0661 7.4400 1.5416 16 1 2.2221 6.8328 1.2495 17 6 2.8583 8.6753 2.1398 18 7 3.8386 9.2641 2.7914 19 14 1.1874 9.5019 2.0199 20 1 0.2634 8.6396 1.2401 21 1 0.6383 9.7083 3.3841 22 1 1.3320 10.8145 1.3407 23 6 4.6327 5.5518 1.2882 24 7 3.5376 -0.6975 0.0003 25 6 4.7121 -1.5733 0.0003 26 6 2.2497 -1.0939 0.0005 27 8 1.8610 -2.2474 0.0003 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5142 -0.8898 30 1 -0.3632 -0.5134 0.8902 31 1 1.9248 2.1389 0.0004 32 1 3.7169 3.2973 -0.0111 33 1 6.3857 3.5585 0.8755 34 1 6.3841 3.5509 -0.9045 35 1 7.2503 5.9593 0.7022 36 1 7.1243 5.8745 -1.0711 37 1 7.0378 8.2237 -0.3080 38 1 5.4830 7.7454 -1.0313 39 1 6.1453 7.8714 1.9472 40 1 5.0465 8.9538 1.0537 41 1 3.6935 10.1276 3.2091 42 1 3.7008 4.9889 1.3393 43 1 5.2684 5.2879 2.1334 44 1 5.0033 -1.7906 1.0279 45 1 4.4714 -2.5038 -0.5137 46 1 5.5354 -1.0769 -0.5134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023766000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:10 Heat of formation + Delta-G solvation = 0.896451 kcal Electronic energy + Delta-G solvation = -27576.459982 eV Core-core repulsion = 23695.989924 eV Total energy + Delta-G solvation = -3880.470058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.64997 -39.62623 -37.86780 -36.96643 -35.67389 -34.86103 -33.14861 -31.25782 -30.50830 -30.14528 -28.27967 -26.35984 -25.51350 -25.26707 -23.34461 -22.15618 -21.22326 -20.75192 -20.49801 -19.18781 -18.14903 -17.01373 -16.86873 -16.61760 -16.03764 -15.45352 -15.34094 -15.10149 -14.88818 -14.43787 -14.40538 -14.14939 -13.83549 -13.63319 -13.48573 -13.09955 -12.90315 -12.86381 -12.44447 -12.42372 -12.33449 -12.23781 -11.72217 -11.36580 -11.08580 -10.79770 -10.78166 -10.56310 -10.29381 -10.24980 -10.18428 -10.07911 -9.97117 -9.65338 -9.48985 -9.10691 -8.53784 -8.02000 -6.74403 -5.86008 -3.29502 1.13188 1.92514 2.62358 2.71439 3.12596 3.30872 3.38566 3.40375 3.45251 4.35207 4.41130 4.69804 4.72571 4.84477 4.96826 4.99619 5.05263 5.22403 5.23716 5.27223 5.36109 5.38570 5.54787 5.54940 5.73059 5.75816 5.86450 5.92020 6.08520 6.15666 6.23504 6.30211 6.34631 6.42060 6.52116 6.63339 6.69694 6.79284 6.88693 6.95809 7.33793 7.40807 7.61269 7.71437 7.97459 8.09222 8.37266 9.13449 9.77042 10.33841 11.22160 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.003147 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.264561 B = 8894.405788 C =10616.373348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.523 5.523 3 C 0.057 3.943 4 C -0.036 4.036 5 C 0.591 3.409 6 O -0.541 6.541 7 N -0.710 5.710 8 C 0.130 3.870 9 C -0.118 4.118 10 H 0.074 0.926 11 C -0.099 4.099 12 C -0.142 4.142 13 C 0.169 3.831 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.153 3.847 24 N -0.510 5.510 25 C 0.101 3.899 26 C 0.648 3.352 27 O -0.568 6.568 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.193 0.807 32 H 0.403 0.597 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.086 0.914 41 H 0.254 0.746 42 H 0.050 0.950 43 H 0.019 0.981 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 -13.529 -7.543 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.240 5.240 3 C -0.073 4.073 4 C -0.144 4.144 5 C 0.377 3.623 6 O -0.420 6.420 7 N -0.361 5.361 8 C 0.006 3.994 9 C -0.139 4.139 10 H 0.093 0.907 11 C -0.138 4.138 12 C -0.181 4.181 13 C 0.043 3.957 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.544 5.544 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.026 3.974 24 N -0.230 5.230 25 C -0.040 4.040 26 C 0.350 3.650 27 O -0.445 6.445 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.210 0.790 32 H 0.239 0.761 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.643 -14.620 -7.436 16.415 hybrid contribution -1.292 0.825 0.074 1.535 sum -1.935 -13.795 -7.362 15.755 Atomic orbital electron populations 1.21871 0.74394 1.04372 1.03840 1.44974 1.08063 1.06056 1.64921 1.22180 0.87926 0.93569 1.03645 1.19716 0.94036 0.84127 1.16556 1.16684 0.86706 0.81973 0.76983 1.90804 1.25999 1.74304 1.50854 1.45759 1.11234 1.04776 1.74356 1.21534 0.86370 0.89275 1.02174 1.21978 0.98802 0.91281 1.01855 0.90720 1.21336 0.96021 0.95926 1.00486 1.22170 0.99522 0.94634 1.01764 1.20801 0.88507 0.95680 0.90719 1.44039 1.05609 0.98913 1.82811 1.19178 0.83454 1.02559 1.33302 0.91696 1.25056 0.97291 0.99970 0.97217 1.70043 1.31753 1.17086 1.35523 0.86254 0.83788 0.79509 0.77350 1.20275 1.21737 1.21551 1.20907 0.96687 0.87249 0.92510 1.45180 1.06984 1.04923 1.65937 1.21874 0.85311 0.93412 1.03437 1.16118 0.80813 0.84874 0.83185 1.91030 1.76581 1.16339 1.60596 0.88735 0.90450 0.90392 0.78968 0.76126 0.91164 0.91567 0.92408 0.93368 0.93161 0.92732 0.96419 0.89582 0.93626 0.93179 0.96266 0.91372 0.90135 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.03 59.85 0.66 1.30 16 2 N -0.52 -5.34 3.12 -128.78 -0.40 -5.74 16 3 C 0.06 0.51 10.86 -16.34 -0.18 0.33 16 4 C -0.04 -0.41 6.88 -81.91 -0.56 -0.97 16 5 C 0.59 7.48 7.79 -12.86 -0.10 7.38 16 6 O -0.54 -8.36 14.83 5.18 0.08 -8.28 16 7 N -0.71 -7.99 5.32 -61.62 -0.33 -8.32 16 8 C 0.13 1.63 5.07 -4.04 -0.02 1.61 16 9 C -0.12 -1.72 2.37 -90.50 -0.21 -1.93 16 10 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 11 C -0.10 -1.49 5.17 -26.69 -0.14 -1.62 16 12 C -0.14 -2.48 6.08 -26.61 -0.16 -2.64 16 13 C 0.17 3.77 5.30 -3.71 -0.02 3.75 16 14 N -0.59 -13.59 2.99 -172.32 -0.52 -14.10 16 15 C -0.26 -6.49 9.58 -15.06 -0.14 -6.63 16 16 H 0.07 1.59 7.88 -52.49 -0.41 1.17 16 17 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 18 N -0.90 -25.07 11.20 55.49 0.62 -24.45 16 19 Si 0.90 20.52 29.59 -169.99 -5.03 15.50 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 23 C 0.15 2.79 5.60 -3.71 -0.02 2.77 16 24 N -0.51 -6.51 3.21 -124.83 -0.40 -6.91 16 25 C 0.10 1.11 10.58 59.85 0.63 1.74 16 26 C 0.65 8.85 8.49 -87.08 -0.74 8.11 16 27 O -0.57 -9.45 17.66 5.17 0.09 -9.36 16 28 H 0.09 0.36 8.07 -51.93 -0.42 -0.06 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.19 1.01 7.37 -52.48 -0.39 0.63 16 32 H 0.40 3.78 6.55 -40.82 -0.27 3.51 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 2.19 6.06 -51.93 -0.31 1.87 16 41 H 0.25 6.84 8.31 -40.82 -0.34 6.51 16 42 H 0.05 0.85 7.14 -51.93 -0.37 0.48 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 46 H 0.10 1.12 6.44 -51.93 -0.33 0.79 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -33.81 372.57 -8.50 -42.31 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.13 Total: 0.55 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -1.09 Total: 13.20 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -1.03 Total: -59.53 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.81 -8.50 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023766000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.203 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds