Wall clock time and date at job start Fri Apr 10 2020 18:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37015 * 125.65084 * 2 1 4 4 C 1.35142 * 107.87572 * 179.97438 * 3 2 1 5 5 C 1.46659 * 126.37599 * 179.73610 * 4 3 2 6 6 O 1.21710 * 119.99942 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00251 * 0.02602 * 5 4 3 8 8 C 1.46499 * 120.00442 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47539 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.49812 * 305.06882 * 9 8 7 11 11 C 1.53042 * 109.50028 * 184.99843 * 9 8 7 12 12 C 1.53035 * 109.54000 * 178.68426 * 11 9 8 13 13 C 1.53196 * 109.31331 * 61.36413 * 12 11 9 14 14 N 1.46921 * 108.77656 * 305.36879 * 13 12 11 15 15 C 1.36936 * 120.63214 * 233.58659 * 14 13 12 16 16 H 1.07996 * 120.00874 * 151.83410 * 15 14 13 17 17 C 1.38822 * 119.99642 * 331.83078 * 15 14 13 18 18 N 1.31614 * 119.99796 * 343.07646 * 17 15 14 19 19 Si 1.86799 * 119.99809 * 163.07456 * 17 15 14 20 20 H 1.48502 * 109.47019 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46956 * 120.00153 * 19 17 15 22 22 H 1.48496 * 109.47371 * 240.00016 * 19 17 15 23 23 C 1.46927 * 118.74312 * 53.60524 * 14 13 12 24 24 N 1.39837 * 107.24708 * 0.02562 * 4 3 2 25 25 C 1.46502 * 126.18271 * 179.97438 * 24 4 3 26 26 C 1.34623 * 125.65247 * 179.97438 * 2 1 3 27 27 O 1.21719 * 125.72482 * 0.04352 * 26 2 1 28 28 H 1.08998 * 109.46868 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47251 * 120.02150 * 1 2 3 30 30 H 1.08999 * 109.46625 * 240.02651 * 1 2 3 31 31 H 1.08003 * 126.06407 * 0.02562 * 3 2 1 32 32 H 0.96997 * 119.99897 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.47281 * 300.00083 * 8 7 5 34 34 H 1.08997 * 109.47176 * 59.99849 * 8 7 5 35 35 H 1.08994 * 109.45894 * 298.70804 * 11 9 8 36 36 H 1.08998 * 109.45692 * 58.67789 * 11 9 8 37 37 H 1.09001 * 109.49912 * 181.31810 * 12 11 9 38 38 H 1.09002 * 109.49958 * 301.38559 * 12 11 9 39 39 H 1.09001 * 109.58113 * 65.15282 * 13 12 11 40 40 H 1.08996 * 109.59019 * 185.57789 * 13 12 11 41 41 H 0.97005 * 119.99779 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.59031 * 186.60767 * 23 14 13 43 43 H 1.09002 * 109.58451 * 66.17630 * 23 14 13 44 44 H 1.09001 * 109.46906 * 89.99717 * 25 24 4 45 45 H 1.08999 * 109.47024 * 209.99913 * 25 24 4 46 46 H 1.08995 * 109.47192 * 329.99951 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7008 0.0006 5 6 4.7393 1.5597 -0.0047 6 8 5.8498 1.0617 -0.0040 7 7 4.6020 2.9004 -0.0102 8 6 5.7894 3.7584 -0.0149 9 6 5.3581 5.2263 -0.0214 10 1 4.6886 5.4050 -0.8627 11 6 6.5928 6.1210 -0.1519 12 6 6.1598 7.5883 -0.1915 13 6 5.4435 7.9406 1.1161 14 7 4.3411 6.9915 1.3219 15 6 3.0661 7.4400 1.5416 16 1 2.2221 6.8328 1.2495 17 6 2.8583 8.6753 2.1398 18 7 3.8386 9.2641 2.7914 19 14 1.1874 9.5019 2.0199 20 1 0.2634 8.6396 1.2401 21 1 0.6383 9.7083 3.3841 22 1 1.3320 10.8145 1.3407 23 6 4.6327 5.5518 1.2882 24 7 3.5376 -0.6975 0.0003 25 6 4.7121 -1.5733 0.0003 26 6 2.2497 -1.0939 0.0005 27 8 1.8610 -2.2474 0.0003 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5142 -0.8898 30 1 -0.3632 -0.5134 0.8902 31 1 1.9248 2.1389 0.0004 32 1 3.7169 3.2973 -0.0111 33 1 6.3857 3.5585 0.8755 34 1 6.3841 3.5509 -0.9045 35 1 7.2503 5.9593 0.7022 36 1 7.1243 5.8745 -1.0711 37 1 7.0378 8.2237 -0.3080 38 1 5.4830 7.7454 -1.0313 39 1 6.1453 7.8714 1.9472 40 1 5.0465 8.9538 1.0537 41 1 3.6935 10.1276 3.2091 42 1 3.7008 4.9889 1.3393 43 1 5.2684 5.2879 2.1334 44 1 5.0033 -1.7906 1.0279 45 1 4.4714 -2.5038 -0.5137 46 1 5.5354 -1.0769 -0.5134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023766000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:09 Heat of formation + Delta-G solvation = -21.319112 kcal Electronic energy + Delta-G solvation = -27577.423321 eV Core-core repulsion = 23695.989924 eV Total energy + Delta-G solvation = -3881.433398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.53051 -40.65417 -39.25775 -38.01064 -36.60784 -36.04154 -34.67400 -32.42477 -32.21269 -31.18426 -29.18595 -27.21917 -27.13025 -26.51245 -24.29530 -23.70781 -22.51905 -21.73483 -21.49649 -20.56666 -19.09351 -18.52718 -17.90291 -17.64766 -17.04232 -16.78137 -16.38766 -16.33347 -15.98768 -15.70165 -15.39670 -15.25598 -15.01327 -14.93700 -14.63876 -14.41988 -13.98130 -13.94763 -13.69112 -13.54042 -13.43889 -13.20022 -12.94041 -12.85107 -12.60934 -12.46434 -12.17202 -11.89683 -11.83659 -11.74975 -11.49970 -11.31430 -11.06084 -10.99031 -10.93591 -10.48465 -10.09645 -8.91101 -8.61136 -7.80751 -5.26251 0.31112 1.10484 1.50953 1.53766 1.62830 1.64172 1.85232 2.20371 2.56344 2.60420 3.35068 3.58494 3.66685 3.94907 3.98858 4.06714 4.10211 4.13911 4.19921 4.32187 4.40610 4.48093 4.48361 4.65232 4.68712 4.70659 4.79490 4.85364 4.94292 4.96528 5.00046 5.07566 5.18867 5.23451 5.28253 5.40249 5.43313 5.52592 5.60977 5.64948 5.74072 5.85023 6.09813 6.45104 6.52843 7.02388 7.16757 7.21168 7.93404 8.45463 9.25701 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.003147 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.264561 B = 8894.405788 C =10616.373348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.518 5.518 3 C 0.092 3.908 4 C -0.069 4.069 5 C 0.595 3.405 6 O -0.575 6.575 7 N -0.700 5.700 8 C 0.141 3.859 9 C -0.100 4.100 10 H 0.084 0.916 11 C -0.098 4.098 12 C -0.130 4.130 13 C 0.172 3.828 14 N -0.609 5.609 15 C -0.254 4.254 16 H 0.079 0.921 17 C -0.055 4.055 18 N -0.939 5.939 19 Si 0.963 3.037 20 H -0.258 1.258 21 H -0.299 1.299 22 H -0.297 1.297 23 C 0.150 3.850 24 N -0.517 5.517 25 C 0.101 3.899 26 C 0.630 3.370 27 O -0.609 6.609 28 H 0.132 0.868 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.238 0.762 32 H 0.415 0.585 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.055 0.945 39 H -0.010 1.010 40 H 0.049 0.951 41 H 0.246 0.754 42 H 0.065 0.935 43 H 0.004 0.996 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 -13.764 -9.150 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.232 5.232 3 C -0.038 4.038 4 C -0.177 4.177 5 C 0.383 3.617 6 O -0.456 6.456 7 N -0.352 5.352 8 C 0.017 3.983 9 C -0.120 4.120 10 H 0.102 0.898 11 C -0.136 4.136 12 C -0.169 4.169 13 C 0.046 3.954 14 N -0.332 5.332 15 C -0.385 4.385 16 H 0.096 0.904 17 C -0.250 4.250 18 N -0.586 5.586 19 Si 0.792 3.208 20 H -0.181 1.181 21 H -0.226 1.226 22 H -0.224 1.224 23 C 0.024 3.976 24 N -0.237 5.237 25 C -0.040 4.040 26 C 0.333 3.667 27 O -0.490 6.490 28 H 0.150 0.850 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.254 0.746 32 H 0.252 0.748 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.008 0.992 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.022 0.978 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.011 -14.851 -9.066 17.516 hybrid contribution -0.890 0.885 0.606 1.393 sum -2.901 -13.966 -8.461 16.585 Atomic orbital electron populations 1.22225 0.72163 1.06898 1.03988 1.45228 1.09360 1.05408 1.63241 1.22874 0.86690 0.94729 0.99551 1.19678 0.94745 0.83474 1.19806 1.16754 0.86531 0.82205 0.76251 1.90791 1.27334 1.74898 1.52582 1.45588 1.11477 1.04219 1.73888 1.21322 0.86735 0.87928 1.02295 1.21730 0.98307 0.92371 0.99632 0.89791 1.21337 0.96357 0.93947 1.01981 1.21991 0.99495 0.96937 0.98468 1.20617 0.88179 0.94156 0.92438 1.44322 1.05030 1.00936 1.82922 1.19639 0.84915 1.02430 1.31482 0.90363 1.25807 1.00349 1.01071 0.97785 1.70210 1.33784 1.17182 1.37386 0.85270 0.80477 0.78311 0.76770 1.18137 1.22646 1.22404 1.21083 0.97722 0.84687 0.94063 1.45305 1.07023 1.05798 1.65553 1.21882 0.85040 0.93506 1.03606 1.16386 0.81368 0.85188 0.83803 1.90983 1.77334 1.18086 1.62608 0.84985 0.90197 0.90505 0.74614 0.74771 0.92175 0.90440 0.92841 0.90130 0.91695 0.92612 0.99237 0.93271 0.94458 0.91611 0.97791 0.91144 0.89773 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.03 127.77 1.41 2.28 16 2 N -0.52 -9.18 3.12 -679.65 -2.12 -11.30 16 3 C 0.09 1.30 10.86 83.17 0.90 2.20 16 4 C -0.07 -1.45 6.88 39.35 0.27 -1.18 16 5 C 0.60 13.80 7.79 86.44 0.67 14.47 16 6 O -0.57 -17.12 14.83 -4.38 -0.06 -17.19 16 7 N -0.70 -13.48 5.32 -467.09 -2.48 -15.96 16 8 C 0.14 3.11 5.07 86.38 0.44 3.55 16 9 C -0.10 -2.58 2.37 -10.71 -0.03 -2.61 16 10 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 11 C -0.10 -2.65 5.17 30.62 0.16 -2.49 16 12 C -0.13 -4.33 6.08 30.67 0.19 -4.15 16 13 C 0.17 7.78 5.30 86.36 0.46 8.24 16 14 N -0.61 -27.52 2.99 -699.09 -2.09 -29.61 16 15 C -0.25 -12.66 9.58 84.04 0.81 -11.85 16 16 H 0.08 3.61 7.88 -2.91 -0.02 3.59 16 17 C -0.06 -2.90 4.92 84.87 0.42 -2.49 16 18 N -0.94 -53.77 11.20 21.65 0.24 -53.53 16 19 Si 0.96 42.05 29.59 68.60 2.03 44.08 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 23 C 0.15 5.17 5.60 86.36 0.48 5.65 16 24 N -0.52 -12.79 3.21 -667.07 -2.14 -14.94 16 25 C 0.10 2.24 10.58 127.77 1.35 3.59 16 26 C 0.63 16.68 8.49 179.11 1.52 18.20 16 27 O -0.61 -20.38 17.66 -4.41 -0.08 -20.46 16 28 H 0.13 0.34 8.07 -2.39 -0.02 0.32 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.24 1.07 7.37 -2.91 -0.02 1.05 16 32 H 0.41 5.96 6.55 -92.71 -0.61 5.35 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.05 2.57 6.06 -2.39 -0.01 2.56 16 41 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 42 H 0.07 2.02 7.14 -2.39 -0.02 2.00 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 46 H 0.10 2.20 6.44 -2.39 -0.02 2.18 16 Total: -1.00 -76.30 372.57 2.72 -73.58 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.38 Total: 11.89 kcal Atomic # 6 Polarization: 24.38 SS G_CDS: 9.05 Total: 33.43 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -8.60 Total: -125.34 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.14 Total: -37.64 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -76.30 2.72 -73.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023766000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.264 kcal (2) G-P(sol) polarization free energy of solvation -76.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds