Wall clock time and date at job start Fri Apr 10 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37023 * 125.65296 * 2 1 4 4 C 1.35139 * 107.87593 * 180.18038 * 3 2 1 5 5 C 1.46659 * 126.37870 * 179.84289 * 4 3 2 6 6 O 1.21699 * 120.00338 * 179.68894 * 5 4 3 7 7 N 1.34779 * 119.99715 * 359.69013 * 5 4 3 8 8 C 1.46503 * 119.99805 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46637 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.70665 * 60.13427 * 9 8 7 11 11 C 1.53632 * 109.66332 * 180.72464 * 9 8 7 12 12 C 1.53041 * 109.24439 * 174.54991 * 11 9 8 13 13 C 1.53045 * 109.53369 * 298.50903 * 12 11 9 14 14 C 1.53191 * 109.31394 * 61.36898 * 13 12 11 15 15 N 1.46928 * 109.58837 * 299.77238 * 9 8 7 16 16 C 1.36932 * 120.63030 * 6.63519 * 15 9 8 17 17 H 1.08006 * 119.99489 * 328.57980 * 16 15 9 18 18 C 1.38809 * 120.00473 * 148.85977 * 16 15 9 19 19 N 1.31612 * 120.00149 * 162.65657 * 18 16 15 20 20 Si 1.86802 * 119.99717 * 342.65399 * 18 16 15 21 21 H 1.48501 * 109.46905 * 89.01352 * 20 18 16 22 22 H 1.48496 * 109.47342 * 209.01549 * 20 18 16 23 23 H 1.48503 * 109.47021 * 329.01462 * 20 18 16 24 24 N 1.39837 * 107.25031 * 359.58327 * 4 3 2 25 25 C 1.46497 * 126.18759 * 180.26043 * 24 4 3 26 26 C 1.34624 * 125.65499 * 179.71337 * 2 1 3 27 27 O 1.21724 * 125.72176 * 359.96608 * 26 2 1 28 28 H 1.08997 * 109.47466 * 270.28550 * 1 2 3 29 29 H 1.09005 * 109.47028 * 30.28421 * 1 2 3 30 30 H 1.09002 * 109.47028 * 150.28018 * 1 2 3 31 31 H 1.08002 * 126.05910 * 0.02949 * 3 2 1 32 32 H 0.96997 * 120.00188 * 0.02562 * 7 5 4 33 33 H 1.08994 * 109.46904 * 60.00295 * 8 7 5 34 34 H 1.08997 * 109.46993 * 300.00078 * 8 7 5 35 35 H 1.09000 * 109.63529 * 54.55423 * 11 9 8 36 36 H 1.09005 * 109.45499 * 294.43473 * 11 9 8 37 37 H 1.08997 * 109.45973 * 178.48864 * 12 11 9 38 38 H 1.08997 * 109.44545 * 58.52044 * 12 11 9 39 39 H 1.08991 * 109.49728 * 301.41275 * 13 12 11 40 40 H 1.09002 * 109.51873 * 181.33464 * 13 12 11 41 41 H 1.08998 * 109.58760 * 185.57564 * 14 13 12 42 42 H 1.08997 * 109.70714 * 65.21480 * 14 13 12 43 43 H 0.97010 * 119.99615 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.46932 * 90.00184 * 25 24 4 45 45 H 1.09003 * 109.47088 * 209.99916 * 25 24 4 46 46 H 1.09001 * 109.47108 * 330.00041 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7008 -0.0040 5 6 4.7393 1.5596 -0.0088 6 8 5.8498 1.0617 -0.0064 7 7 4.6020 2.9004 -0.0156 8 6 5.7895 3.7583 -0.0198 9 6 5.3581 5.2262 -0.0267 10 1 4.7642 5.4389 0.8622 11 6 6.6002 6.1300 -0.0494 12 6 6.1601 7.5887 -0.1934 13 6 5.4097 7.7686 -1.5151 14 6 4.1588 6.8843 -1.5120 15 7 4.5597 5.4992 -1.2295 16 6 4.1912 4.4814 -2.0682 17 1 4.8321 3.6202 -2.1862 18 6 2.9967 4.5592 -2.7711 19 7 2.7941 3.7804 -3.8126 20 14 1.6769 5.7693 -2.2389 21 1 1.8974 7.0720 -2.9168 22 1 0.3404 5.2386 -2.6091 23 1 1.7439 5.9593 -0.7676 24 7 3.5377 -0.6975 0.0031 25 6 4.7120 -1.5733 0.0074 26 6 2.2497 -1.0939 0.0055 27 8 1.8610 -2.2474 0.0118 28 1 -0.3634 0.0051 1.0276 29 1 -0.3633 0.8875 -0.5183 30 1 -0.3633 -0.8925 -0.5095 31 1 1.9247 2.1389 0.0004 32 1 3.7169 3.2973 -0.0171 33 1 6.3850 3.5500 -0.9086 34 1 6.3847 3.5591 0.8713 35 1 7.2364 5.8571 -0.8913 36 1 7.1553 6.0076 0.8807 37 1 7.0374 8.2354 -0.1829 38 1 5.5039 7.8532 0.6357 39 1 6.0571 7.4803 -2.3431 40 1 5.1170 8.8125 -1.6285 41 1 3.6746 6.9328 -2.4874 42 1 3.4672 7.2285 -0.7432 43 1 1.9592 3.8345 -4.3035 44 1 5.0035 -1.7852 1.0360 45 1 4.4711 -2.5066 -0.5016 46 1 5.5352 -1.0796 -0.5092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024816393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:17 Heat of formation + Delta-G solvation = -7.329779 kcal Electronic energy + Delta-G solvation = -28918.922987 eV Core-core repulsion = 25038.096212 eV Total energy + Delta-G solvation = -3880.826775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.50008 -40.64894 -39.38222 -37.96896 -36.50021 -35.67670 -34.79270 -32.79064 -32.42618 -31.30169 -29.23523 -27.56468 -27.07668 -26.16134 -24.24877 -24.11425 -22.30997 -21.66858 -21.40970 -20.78394 -19.18069 -18.26716 -17.87333 -17.59465 -17.24790 -16.94788 -16.59830 -16.30456 -15.95829 -15.51352 -15.26583 -15.21307 -15.13196 -14.95221 -14.72515 -14.56730 -14.20151 -13.97397 -13.67204 -13.55843 -13.45165 -13.23359 -13.14533 -12.88457 -12.53552 -12.44174 -12.21601 -11.89337 -11.81024 -11.62141 -11.48740 -11.22341 -11.14051 -10.95426 -10.86962 -10.55300 -9.88190 -8.88088 -8.70797 -7.98856 -5.36791 0.36802 1.13793 1.42471 1.50866 1.60544 1.65393 1.92125 2.32768 2.54423 2.68593 3.16307 3.40430 3.63218 3.96505 4.00451 4.05556 4.14160 4.15960 4.24963 4.33041 4.39972 4.42009 4.47437 4.50239 4.59334 4.68781 4.70091 4.72983 4.80753 4.93274 4.94510 5.01400 5.13110 5.22709 5.26218 5.31363 5.37135 5.38095 5.57120 5.64392 5.70395 6.02986 6.10021 6.35453 6.68139 7.03749 7.05022 7.29197 7.76073 8.17633 9.18894 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.004725 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.755045 B = 5924.487850 C = 7195.761634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.518 5.518 3 C 0.083 3.917 4 C -0.057 4.057 5 C 0.589 3.411 6 O -0.585 6.585 7 N -0.676 5.676 8 C 0.141 3.859 9 C 0.162 3.838 10 H 0.062 0.938 11 C -0.125 4.125 12 C -0.103 4.103 13 C -0.132 4.132 14 C 0.119 3.881 15 N -0.615 5.615 16 C -0.230 4.230 17 H 0.059 0.941 18 C -0.023 4.023 19 N -0.954 5.954 20 Si 0.935 3.065 21 H -0.293 1.293 22 H -0.318 1.318 23 H -0.244 1.244 24 N -0.515 5.515 25 C 0.102 3.898 26 C 0.633 3.367 27 O -0.607 6.607 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.216 0.784 32 H 0.412 0.588 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.256 0.744 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 3.962 12.193 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.233 5.233 3 C -0.047 4.047 4 C -0.165 4.165 5 C 0.376 3.624 6 O -0.468 6.468 7 N -0.325 5.325 8 C 0.017 3.983 9 C 0.057 3.943 10 H 0.079 0.921 11 C -0.164 4.164 12 C -0.141 4.141 13 C -0.171 4.171 14 C -0.006 4.006 15 N -0.341 5.341 16 C -0.360 4.360 17 H 0.077 0.923 18 C -0.218 4.218 19 N -0.600 5.600 20 Si 0.765 3.235 21 H -0.221 1.221 22 H -0.248 1.248 23 H -0.168 1.168 24 N -0.234 5.234 25 C -0.038 4.038 26 C 0.336 3.664 27 O -0.489 6.489 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.233 0.767 32 H 0.250 0.750 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.105 2.716 12.110 12.411 hybrid contribution -1.159 0.408 -0.872 1.507 sum -1.054 3.124 11.237 11.711 Atomic orbital electron populations 1.22194 0.72405 1.05608 1.05130 1.45143 1.09290 1.05262 1.63642 1.22509 0.87316 0.94192 1.00668 1.19727 0.94767 0.83676 1.18308 1.16756 0.86430 0.82526 0.76698 1.90718 1.27056 1.75013 1.53982 1.45569 1.11564 1.03845 1.71571 1.21323 0.86835 0.89136 1.00961 1.21084 0.92591 0.91603 0.89041 0.92077 1.21984 0.96867 0.95405 1.02154 1.21363 1.00087 0.95953 0.96672 1.21940 0.97492 0.99110 0.98596 1.21433 0.96043 0.84869 0.98247 1.44540 1.62511 1.02164 1.24923 1.18762 1.00428 0.99460 1.17351 0.92340 1.25824 0.99487 0.98956 0.97520 1.69979 1.26138 1.43943 1.19977 0.86140 0.78624 0.78491 0.80228 1.22134 1.24782 1.16773 1.45284 1.07158 1.05502 1.65504 1.21880 0.84868 0.93215 1.03880 1.16304 0.81293 0.85081 0.83747 1.90952 1.77297 1.17612 1.63020 0.88567 0.87209 0.89937 0.76746 0.75005 0.94074 0.89756 0.93260 0.89384 0.90710 0.91206 0.93582 0.90946 0.93918 0.94460 0.93496 0.90181 0.89806 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.73 11.01 127.77 1.41 3.14 16 2 N -0.52 -15.17 3.12 -679.65 -2.12 -17.29 16 3 C 0.08 2.42 10.91 83.17 0.91 3.33 16 4 C -0.06 -1.96 6.88 39.35 0.27 -1.69 16 5 C 0.59 21.63 7.79 86.44 0.67 22.30 16 6 O -0.58 -24.07 14.83 -4.35 -0.06 -24.14 16 7 N -0.68 -22.79 3.83 -467.10 -1.79 -24.58 16 8 C 0.14 4.53 4.44 86.38 0.38 4.92 16 9 C 0.16 4.84 3.03 45.12 0.14 4.98 16 10 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 11 C -0.12 -3.10 5.40 30.82 0.17 -2.93 16 12 C -0.10 -2.35 5.88 30.62 0.18 -2.17 16 13 C -0.13 -3.80 6.08 30.67 0.19 -3.61 16 14 C 0.12 4.25 4.19 86.36 0.36 4.61 16 15 N -0.62 -23.45 2.71 -674.40 -1.83 -25.28 16 16 C -0.23 -10.84 7.42 84.03 0.62 -10.22 16 17 H 0.06 3.17 6.07 -2.91 -0.02 3.15 16 18 C -0.02 -1.14 5.27 84.86 0.45 -0.70 16 19 N -0.95 -54.41 13.97 21.65 0.30 -54.10 16 20 Si 0.94 39.86 24.32 68.60 1.67 41.53 16 21 H -0.29 -12.69 6.52 99.48 0.65 -12.04 16 22 H -0.32 -14.17 7.11 99.48 0.71 -13.47 16 23 H -0.24 -9.21 6.75 99.48 0.67 -8.54 16 24 N -0.52 -18.12 3.21 -667.06 -2.14 -20.26 16 25 C 0.10 3.15 10.58 127.77 1.35 4.50 16 26 C 0.63 22.87 8.49 179.11 1.52 24.39 16 27 O -0.61 -24.91 17.59 -4.43 -0.08 -24.98 16 28 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.08 1.75 8.04 -2.39 -0.02 1.73 16 31 H 0.22 5.00 7.37 -2.91 -0.02 4.98 16 32 H 0.41 13.40 6.24 -92.71 -0.58 12.82 16 33 H 0.04 1.59 7.42 -2.39 -0.02 1.57 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.04 1.78 4.64 -2.39 -0.01 1.77 16 42 H 0.04 1.25 7.05 -2.39 -0.02 1.23 16 43 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 44 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.08 2.42 8.08 -2.39 -0.02 2.40 16 46 H 0.09 2.94 6.45 -2.39 -0.02 2.93 16 Total: -1.00 -70.85 360.53 2.88 -67.97 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.32 Total: 30.29 kcal Atomic # 6 Polarization: 42.23 SS G_CDS: 8.62 Total: 50.84 kcal Atomic # 7 Polarization: -133.93 SS G_CDS: -7.58 Total: -141.51 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -0.14 Total: -49.12 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.67 Total: 41.53 kcal Total: -70.85 2.88 -67.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024816393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.636 kcal (2) G-P(sol) polarization free energy of solvation -70.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds