Wall clock time and date at job start Fri Apr 10 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37009 * 125.65587 * 2 1 4 4 C 1.35147 * 107.87864 * 180.14024 * 3 2 1 5 5 C 1.46660 * 126.37605 * 179.84561 * 4 3 2 6 6 O 1.21706 * 119.99551 * 179.69618 * 5 4 3 7 7 N 1.34770 * 120.00186 * 359.69025 * 5 4 3 8 8 C 1.46500 * 120.00256 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47473 * 205.00145 * 8 7 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47328 * 60.00126 * 10 9 8 12 12 N 1.46505 * 109.46998 * 180.02562 * 11 10 9 13 13 C 1.36939 * 119.99584 * 204.99673 * 12 11 10 14 14 H 1.07993 * 120.00301 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99501 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00187 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99877 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47103 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46983 * 120.00050 * 17 15 13 20 20 H 1.48495 * 109.47328 * 240.00239 * 17 15 13 21 21 C 1.53002 * 109.46891 * 299.99597 * 11 10 9 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 11 10 23 23 N 1.39831 * 107.24383 * 359.58484 * 4 3 2 24 24 C 1.46504 * 126.18441 * 180.25937 * 23 4 3 25 25 C 1.34629 * 125.64726 * 179.66862 * 2 1 3 26 26 O 1.21727 * 125.73117 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.47111 * 180.30523 * 1 2 3 28 28 H 1.08997 * 109.46856 * 300.30693 * 1 2 3 29 29 H 1.09000 * 109.46606 * 60.30570 * 1 2 3 30 30 H 1.08000 * 126.06199 * 359.97438 * 3 2 1 31 31 H 0.97005 * 120.00370 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.46845 * 325.00694 * 8 7 5 33 33 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 34 34 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 35 35 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 37 37 H 1.08992 * 109.47554 * 59.99639 * 11 10 9 38 38 H 0.97001 * 119.99745 * 24.99557 * 12 11 10 39 39 H 0.96998 * 120.00284 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.47097 * 180.02562 * 21 11 10 41 41 H 1.09001 * 109.47142 * 300.00176 * 21 11 10 42 42 H 1.09001 * 109.47375 * 59.99908 * 22 21 11 43 43 H 1.09000 * 109.47140 * 179.97438 * 22 21 11 44 44 H 1.08998 * 109.47476 * 89.99785 * 24 23 4 45 45 H 1.08998 * 109.47399 * 210.00291 * 24 23 4 46 46 H 1.09002 * 109.47100 * 330.00333 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2637 1.1132 0.0000 4 6 3.5506 0.7006 -0.0031 5 6 4.7394 1.5595 -0.0075 6 8 5.8499 1.0614 -0.0044 7 7 4.6021 2.9002 -0.0149 8 6 5.7896 3.7581 -0.0198 9 6 5.4375 5.1198 0.5823 10 6 6.6776 6.0160 0.5766 11 6 7.1639 6.2047 -0.8617 12 7 8.3517 7.0623 -0.8671 13 6 8.6687 7.7858 -1.9857 14 1 8.0429 7.7245 -2.8638 15 6 9.7938 8.5988 -1.9906 16 7 10.5562 8.6739 -0.9203 17 14 10.2260 9.5863 -3.5162 18 1 9.2168 9.3289 -4.5747 19 1 10.2351 11.0334 -3.1830 20 1 11.5692 9.1820 -4.0035 21 6 7.5160 4.8429 -1.4638 22 6 6.2760 3.9468 -1.4582 23 7 3.5376 -0.6976 0.0046 24 6 4.7120 -1.5735 0.0098 25 6 2.2496 -1.0940 0.0063 26 8 1.8609 -2.2475 0.0126 27 1 -0.3633 -1.0277 0.0055 28 1 -0.3633 0.5186 0.8872 29 1 -0.3632 0.5091 -0.8927 30 1 1.9249 2.1387 -0.0004 31 1 3.7170 3.2972 -0.0171 32 1 6.5772 3.2917 0.5721 33 1 5.0907 4.9854 1.6069 34 1 4.6500 5.5861 -0.0097 35 1 6.4268 6.9860 1.0060 36 1 7.4655 5.5499 1.1683 37 1 6.3761 6.6708 -1.4535 38 1 8.9134 7.1176 -0.0783 39 1 11.3426 9.2417 -0.9238 40 1 7.8629 4.9774 -2.4884 41 1 8.3039 4.3768 -0.8721 42 1 5.4881 4.4129 -2.0499 43 1 6.5267 2.9768 -1.8875 44 1 5.0030 -1.7850 1.0387 45 1 4.4714 -2.5069 -0.4990 46 1 5.5355 -1.0801 -0.5065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026611270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:33 Heat of formation + Delta-G solvation = -39.182339 kcal Electronic energy + Delta-G solvation = -27137.653803 eV Core-core repulsion = 23255.445798 eV Total energy + Delta-G solvation = -3882.208005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.52418 -40.90679 -39.20962 -38.00208 -36.61190 -36.13304 -34.70040 -32.67537 -31.61722 -31.43000 -29.57153 -28.29376 -27.06842 -25.60930 -24.36366 -23.53580 -22.50203 -21.66842 -21.46969 -20.82466 -19.27616 -18.82514 -17.87308 -17.66062 -17.29425 -16.84747 -16.41452 -16.11786 -15.97874 -15.70123 -15.36240 -15.33406 -15.00593 -15.00070 -14.66676 -14.51827 -13.99261 -13.94400 -13.42380 -13.41331 -13.26736 -13.10715 -13.01868 -12.84459 -12.56854 -12.38651 -12.24533 -12.07171 -11.95724 -11.83609 -11.61430 -11.40947 -11.14957 -11.03981 -10.93406 -10.79678 -10.05236 -8.95455 -8.90033 -7.91028 -5.18437 0.33490 1.10540 1.48486 1.49276 1.58810 1.65000 1.83596 2.21766 2.57330 2.60636 3.42406 3.57426 3.81516 3.88515 3.96103 3.97628 4.04243 4.18661 4.32863 4.35770 4.38358 4.45023 4.47704 4.56863 4.59675 4.67603 4.68653 4.72012 4.83204 4.90425 4.95835 5.07785 5.18341 5.22175 5.25488 5.33527 5.35196 5.48930 5.55807 5.61139 5.64238 5.71297 6.11929 6.32444 6.58753 7.04051 7.23298 7.37663 8.16930 8.37791 9.32953 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030309 B = 0.002177 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.607956 B =12858.748233 C =13081.674295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.517 5.517 3 C 0.100 3.900 4 C -0.073 4.073 5 C 0.593 3.407 6 O -0.578 6.578 7 N -0.691 5.691 8 C 0.157 3.843 9 C -0.104 4.104 10 C -0.115 4.115 11 C 0.171 3.829 12 N -0.741 5.741 13 C -0.231 4.231 14 H 0.076 0.924 15 C -0.081 4.081 16 N -0.972 5.972 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.294 1.294 20 H -0.298 1.298 21 C -0.124 4.124 22 C -0.113 4.113 23 N -0.519 5.519 24 C 0.101 3.899 25 C 0.629 3.371 26 O -0.612 6.612 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.249 0.751 31 H 0.421 0.579 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.371 0.629 39 H 0.249 0.751 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.106 -13.788 3.997 28.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.232 5.232 3 C -0.031 4.031 4 C -0.180 4.180 5 C 0.380 3.620 6 O -0.458 6.458 7 N -0.343 5.343 8 C 0.053 3.947 9 C -0.143 4.143 10 C -0.154 4.154 11 C 0.063 3.937 12 N -0.380 5.380 13 C -0.363 4.363 14 H 0.094 0.906 15 C -0.273 4.273 16 N -0.623 5.623 17 Si 0.798 3.202 18 H -0.189 1.189 19 H -0.221 1.221 20 H -0.226 1.226 21 C -0.165 4.165 22 C -0.152 4.152 23 N -0.238 5.238 24 C -0.040 4.040 25 C 0.331 3.669 26 O -0.494 6.494 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.265 0.735 31 H 0.259 0.741 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.202 0.798 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.664 -14.935 3.822 29.085 hybrid contribution 1.126 0.435 -0.551 1.327 sum -23.538 -14.500 3.271 27.839 Atomic orbital electron populations 1.22258 0.72056 1.05228 1.06066 1.45213 1.09388 1.05372 1.63225 1.22897 0.86082 0.94965 0.99120 1.19701 0.94898 0.83280 1.20151 1.16882 0.86509 0.82574 0.76008 1.90832 1.27810 1.74987 1.52217 1.45478 1.10963 1.03776 1.74090 1.20871 0.87118 0.90667 0.96079 1.21660 0.97765 0.92138 1.02698 1.21649 0.97804 0.99979 0.95922 1.20528 0.88367 0.89119 0.95639 1.42720 1.28899 1.51796 1.14561 1.19662 1.06057 1.17173 0.93384 0.90576 1.25535 0.98658 1.02826 1.00290 1.69822 1.18068 1.44556 1.29885 0.85133 0.77459 0.78015 0.79573 1.18898 1.22109 1.22593 1.22036 0.97199 0.97187 1.00078 1.21774 0.97684 0.98677 0.97043 1.45294 1.06956 1.06044 1.65554 1.21837 0.85150 0.93510 1.03542 1.16428 0.81380 0.85320 0.83755 1.90990 1.77309 1.18284 1.62782 0.90424 0.87303 0.87411 0.73534 0.74074 0.91533 0.88907 0.88714 0.91429 0.93095 0.93138 0.79793 0.94237 0.94333 0.94463 0.90066 0.93427 0.91072 0.89995 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.39 11.16 127.77 1.43 1.82 16 2 N -0.52 -6.62 3.12 -679.64 -2.12 -8.74 16 3 C 0.10 0.79 10.91 83.17 0.91 1.70 16 4 C -0.07 -1.22 6.88 39.35 0.27 -0.95 16 5 C 0.59 11.93 7.75 86.44 0.67 12.60 16 6 O -0.58 -17.05 14.49 -4.37 -0.06 -17.11 16 7 N -0.69 -9.50 5.06 -446.51 -2.26 -11.76 16 8 C 0.16 3.19 2.46 44.99 0.11 3.30 16 9 C -0.10 -1.78 5.39 30.59 0.16 -1.61 16 10 C -0.11 -3.17 5.39 30.59 0.16 -3.01 16 11 C 0.17 6.18 2.77 44.99 0.12 6.30 16 12 N -0.74 -36.33 5.12 -322.95 -1.65 -37.98 16 13 C -0.23 -12.56 9.93 84.03 0.83 -11.72 16 14 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 15 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 16 N -0.97 -59.56 13.06 21.65 0.28 -59.27 16 17 Si 0.97 45.96 29.55 68.60 2.03 47.98 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 20 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 21 C -0.12 -4.26 5.50 30.59 0.17 -4.10 16 22 C -0.11 -2.82 5.49 30.60 0.17 -2.65 16 23 N -0.52 -11.53 3.21 -667.03 -2.14 -13.67 16 24 C 0.10 2.17 10.58 127.77 1.35 3.53 16 25 C 0.63 14.62 8.49 179.11 1.52 16.14 16 26 O -0.61 -18.97 17.35 -4.44 -0.08 -19.04 16 27 H 0.08 0.70 7.69 -2.39 -0.02 0.68 16 28 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.25 -1.10 7.37 -2.91 -0.02 -1.12 16 31 H 0.42 1.82 7.45 -92.70 -0.69 1.13 16 32 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 38 H 0.37 19.78 7.80 -92.71 -0.72 19.06 16 39 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 46 H 0.09 2.14 6.45 -2.39 -0.02 2.12 16 Total: -1.00 -84.32 376.67 1.93 -82.39 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.41 Total: 20.06 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 8.35 Total: 17.15 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -7.90 Total: -131.43 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.14 Total: -36.15 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -84.32 1.93 -82.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026611270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.208 kcal (2) G-P(sol) polarization free energy of solvation -84.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds