Wall clock time and date at job start Fri Apr 10 2020 18:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00224 * 2 1 4 4 C 1.50703 * 109.47468 * 179.97438 * 3 2 1 5 5 N 1.30453 * 125.98517 * 269.96268 * 4 3 2 6 6 N 1.39929 * 108.89426 * 180.02562 * 5 4 3 7 7 C 1.46506 * 125.75448 * 179.97438 * 6 5 4 8 8 C 1.34262 * 108.49457 * 359.75011 * 6 5 4 9 9 C 1.38046 * 107.41573 * 0.39353 * 8 6 5 10 10 C 1.47430 * 126.41643 * 179.87461 * 9 8 6 11 11 O 1.21608 * 119.99869 * 179.68922 * 10 9 8 12 12 N 1.34772 * 119.99729 * 359.68518 * 10 9 8 13 13 C 1.46504 * 119.99676 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46991 * 184.66328 * 13 12 10 15 15 H 1.08997 * 110.00037 * 54.40463 * 14 13 12 16 16 C 1.54328 * 109.88253 * 293.30821 * 14 13 12 17 17 C 1.55271 * 103.00829 * 218.46742 * 16 14 13 18 18 C 1.54911 * 101.52965 * 35.36431 * 17 16 14 19 19 N 1.47023 * 109.88399 * 175.50576 * 14 13 12 20 20 C 1.36945 * 125.64364 * 298.33764 * 19 14 13 21 21 H 1.07999 * 119.99844 * 346.28822 * 20 19 14 22 22 C 1.38813 * 119.99936 * 166.29408 * 20 19 14 23 23 N 1.31621 * 119.99796 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47134 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47333 * 119.99770 * 24 22 20 27 27 H 1.48501 * 109.47286 * 240.00278 * 24 22 20 28 28 H 1.09004 * 109.47283 * 300.00116 * 1 2 3 29 29 H 1.09000 * 109.47201 * 59.99890 * 1 2 3 30 30 H 1.09000 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47364 * 59.99618 * 3 2 1 32 32 H 1.09005 * 109.47306 * 300.00104 * 3 2 1 33 33 H 1.08995 * 109.47016 * 89.97603 * 7 6 5 34 34 H 1.09007 * 109.47036 * 209.97560 * 7 6 5 35 35 H 1.08996 * 109.46986 * 329.97863 * 7 6 5 36 36 H 1.07998 * 126.29544 * 180.24754 * 8 6 5 37 37 H 0.96996 * 120.00164 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47103 * 64.66430 * 13 12 10 39 39 H 1.08998 * 109.47218 * 304.66198 * 13 12 10 40 40 H 1.08999 * 110.71908 * 336.76021 * 16 14 13 41 41 H 1.09000 * 110.71633 * 100.02768 * 16 14 13 42 42 H 1.09002 * 110.96391 * 277.33660 * 17 16 14 43 43 H 1.09005 * 111.09857 * 153.45022 * 17 16 14 44 44 H 1.08998 * 110.36709 * 204.23305 * 18 17 16 45 45 H 1.09001 * 110.36536 * 82.01625 * 18 17 16 46 46 H 0.97000 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2763 1.1268 1.0565 6 7 5.6098 1.0215 0.6459 7 6 6.7736 0.9308 1.5312 8 6 5.6427 1.0126 -0.6963 9 6 4.3407 1.1205 -1.1422 10 6 3.8969 1.1542 -2.5477 11 8 2.7129 1.2470 -2.8094 12 7 4.8033 1.0823 -3.5425 13 6 4.3622 1.1152 -4.9391 14 6 5.5660 0.9025 -5.8592 15 1 6.0865 -0.0154 -5.5860 16 6 6.5285 2.1039 -5.7505 17 6 7.0116 2.2983 -7.2133 18 6 5.7354 1.9333 -8.0119 19 7 5.1191 0.8266 -7.2578 20 6 4.2711 -0.1164 -7.7746 21 1 4.0465 -1.0086 -7.2089 22 6 3.7003 0.0744 -9.0255 23 7 3.9738 1.1619 -9.7146 24 14 2.5442 -1.2121 -9.7307 25 1 2.4027 -2.3324 -8.7662 26 1 1.2139 -0.6001 -9.9777 27 1 3.0972 -1.7272 -11.0090 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.9813 -0.1162 1.7521 34 1 7.6387 1.3773 1.0410 35 1 6.5665 1.4637 2.4592 36 1 6.5256 0.9375 -1.3137 37 1 5.7476 1.0080 -3.3337 38 1 3.9072 2.0822 -5.1538 39 1 3.6315 0.3243 -5.1081 40 1 6.0005 2.9905 -5.3995 41 1 7.3668 1.8683 -5.0949 42 1 7.8281 1.6155 -7.4483 43 1 7.3043 3.3323 -7.3958 44 1 5.9979 1.6068 -9.0182 45 1 5.0581 2.7863 -8.0551 46 1 3.5747 1.2955 -10.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027979385.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:53 Heat of formation + Delta-G solvation = 24.816933 kcal Electronic energy + Delta-G solvation = -27418.297768 eV Core-core repulsion = 23538.864979 eV Total energy + Delta-G solvation = -3879.432789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58279 -38.97002 -37.76154 -37.46569 -34.21512 -33.76793 -32.47149 -30.94354 -29.54426 -29.08877 -28.45593 -26.64887 -25.35728 -24.74752 -23.81932 -22.34610 -20.49314 -20.20690 -19.86510 -19.38695 -17.81716 -16.73049 -16.54499 -16.03452 -15.74365 -15.67823 -15.59055 -15.22861 -14.77353 -14.58627 -14.28538 -13.82379 -13.75253 -13.42750 -13.12659 -13.03004 -12.71239 -12.37498 -12.16701 -12.07465 -11.86987 -11.73383 -11.43296 -11.32365 -11.05407 -10.91865 -10.78774 -10.19532 -10.07428 -9.92207 -9.84801 -9.76932 -9.69316 -9.68615 -9.37598 -8.87950 -8.61063 -8.46740 -6.82667 -5.74688 -3.11079 1.37139 1.91114 2.10010 3.41375 3.48477 3.50324 3.55440 3.64766 3.94392 4.21422 4.41480 4.51447 4.70383 4.76412 4.96729 5.00973 5.18385 5.29739 5.33680 5.35981 5.40118 5.41401 5.47602 5.54628 5.64282 5.68295 5.75953 5.81871 6.07826 6.15191 6.23116 6.24165 6.47268 6.54655 6.57876 6.63814 6.77801 6.86431 7.09738 7.12030 7.35912 7.53458 7.62302 7.81386 7.92012 8.27453 8.63955 9.19628 9.80107 10.46675 11.37143 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.003277 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.879215 B = 8543.272803 C =10208.811258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.141 3.859 4 C 0.129 3.871 5 N -0.284 5.284 6 N -0.361 5.361 7 C 0.097 3.903 8 C 0.094 3.906 9 C -0.265 4.265 10 C 0.586 3.414 11 O -0.539 6.539 12 N -0.721 5.721 13 C 0.112 3.888 14 C 0.152 3.848 15 H 0.037 0.963 16 C -0.127 4.127 17 C -0.149 4.149 18 C 0.171 3.829 19 N -0.589 5.589 20 C -0.231 4.231 21 H 0.077 0.923 22 C -0.002 4.002 23 N -0.916 5.916 24 Si 0.910 3.090 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.291 1.291 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.185 0.815 37 H 0.390 0.610 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.025 0.975 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.586 2.279 21.345 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.063 3.937 4 C -0.039 4.039 5 N -0.107 5.107 6 N -0.140 5.140 7 C -0.044 4.044 8 C -0.057 4.057 9 C -0.280 4.280 10 C 0.372 3.628 11 O -0.417 6.417 12 N -0.372 5.372 13 C -0.013 4.013 14 C 0.043 3.957 15 H 0.055 0.945 16 C -0.165 4.165 17 C -0.187 4.187 18 C 0.047 3.953 19 N -0.314 5.314 20 C -0.360 4.360 21 H 0.095 0.905 22 C -0.199 4.199 23 N -0.563 5.563 24 Si 0.740 3.260 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.218 1.218 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.202 0.798 37 H 0.223 0.777 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.043 0.957 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.867 2.125 22.268 23.126 hybrid contribution -0.217 -0.465 -1.113 1.226 sum 5.650 1.660 21.155 21.959 Atomic orbital electron populations 1.22729 0.80491 1.02809 1.00114 1.87894 1.19928 1.26586 1.95481 1.20692 0.84844 0.85982 1.02168 1.21941 0.95664 0.97122 0.89176 1.77144 0.86379 1.24598 1.22584 1.48285 1.06284 1.54547 1.04880 1.22001 0.83792 1.03883 0.94683 1.23096 0.99045 0.98434 0.85100 1.20403 0.92052 1.20572 0.94949 1.17214 0.85825 0.76473 0.83259 1.90750 1.16504 1.50304 1.84099 1.45953 1.09261 1.74926 1.07080 1.22207 0.99455 1.02318 0.77350 1.21131 0.92039 0.95619 0.86890 0.94516 1.22643 0.98049 0.98297 0.97506 1.23024 1.00134 0.99828 0.95736 1.21466 0.88655 0.89963 0.95248 1.44497 1.53996 1.31541 1.01327 1.19049 1.18863 0.97471 1.00592 0.90529 1.24895 0.99541 0.97447 0.98046 1.69948 1.46688 1.26374 1.13260 0.86071 0.80637 0.80542 0.78702 1.20329 1.21595 1.21769 0.94285 0.93384 0.89610 0.92239 0.89088 0.90165 0.88930 0.88882 0.79768 0.77677 0.91996 0.91044 0.91764 0.92510 0.92351 0.92356 0.90810 0.95684 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.81 10.69 -35.23 -0.38 -6.19 16 3 C 0.14 2.00 5.97 36.01 0.21 2.21 16 4 C 0.13 1.90 6.89 -82.02 -0.57 1.33 16 5 N -0.28 -3.84 12.50 33.90 0.42 -3.41 16 6 N -0.36 -3.62 3.98 -67.59 -0.27 -3.89 16 7 C 0.10 0.47 11.44 59.85 0.68 1.15 16 8 C 0.09 0.94 10.99 -16.56 -0.18 0.76 16 9 C -0.26 -3.75 6.13 -105.07 -0.64 -4.40 16 10 C 0.59 9.91 7.81 -12.52 -0.10 9.82 16 11 O -0.54 -11.16 14.92 5.27 0.08 -11.08 16 12 N -0.72 -11.02 5.39 -61.38 -0.33 -11.36 16 13 C 0.11 2.16 5.09 -4.04 -0.02 2.14 16 14 C 0.15 2.95 3.22 -66.95 -0.22 2.73 16 15 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 16 C -0.13 -2.03 6.07 -24.83 -0.15 -2.18 16 17 C -0.15 -2.65 7.10 -24.52 -0.17 -2.83 16 18 C 0.17 4.05 5.42 -2.53 -0.01 4.03 16 19 N -0.59 -14.55 3.13 -162.57 -0.51 -15.05 16 20 C -0.23 -6.35 9.73 -15.06 -0.15 -6.50 16 21 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 22 C 0.00 -0.06 5.47 -17.43 -0.10 -0.16 16 23 N -0.92 -26.65 10.54 55.49 0.58 -26.07 16 24 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.37 6.56 -51.93 -0.34 1.03 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.19 1.06 7.46 -52.49 -0.39 0.67 16 37 H 0.39 4.53 7.17 -40.82 -0.29 4.24 16 38 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 39 H 0.07 1.61 7.86 -51.93 -0.41 1.20 16 40 H 0.06 1.02 7.78 -51.93 -0.40 0.61 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.94 6.86 -51.93 -0.36 1.59 16 45 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -36.00 379.87 -7.22 -43.22 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.23 Total: 1.25 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -0.29 Total: 9.62 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.10 Total: -59.78 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.30 Total: -17.27 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.00 -7.22 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027979385.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.037 kcal (2) G-P(sol) polarization free energy of solvation -36.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds