Wall clock time and date at job start Fri Apr 10 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00224 * 2 1 4 4 C 1.50703 * 109.47468 * 179.97438 * 3 2 1 5 5 N 1.30453 * 125.98517 * 269.96268 * 4 3 2 6 6 N 1.39929 * 108.89426 * 180.02562 * 5 4 3 7 7 C 1.46506 * 125.75448 * 179.97438 * 6 5 4 8 8 C 1.34262 * 108.49457 * 359.75011 * 6 5 4 9 9 C 1.38046 * 107.41573 * 0.39353 * 8 6 5 10 10 C 1.47430 * 126.41643 * 179.87461 * 9 8 6 11 11 O 1.21608 * 119.99869 * 179.68922 * 10 9 8 12 12 N 1.34772 * 119.99729 * 359.68518 * 10 9 8 13 13 C 1.46504 * 119.99676 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46991 * 184.66328 * 13 12 10 15 15 H 1.08997 * 110.00037 * 54.40463 * 14 13 12 16 16 C 1.54328 * 109.88253 * 293.30821 * 14 13 12 17 17 C 1.55271 * 103.00829 * 218.46742 * 16 14 13 18 18 C 1.54911 * 101.52965 * 35.36431 * 17 16 14 19 19 N 1.47023 * 109.88399 * 175.50576 * 14 13 12 20 20 C 1.36945 * 125.64364 * 298.33764 * 19 14 13 21 21 H 1.07999 * 119.99844 * 346.28822 * 20 19 14 22 22 C 1.38813 * 119.99936 * 166.29408 * 20 19 14 23 23 N 1.31621 * 119.99796 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47134 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47333 * 119.99770 * 24 22 20 27 27 H 1.48501 * 109.47286 * 240.00278 * 24 22 20 28 28 H 1.09004 * 109.47283 * 300.00116 * 1 2 3 29 29 H 1.09000 * 109.47201 * 59.99890 * 1 2 3 30 30 H 1.09000 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47364 * 59.99618 * 3 2 1 32 32 H 1.09005 * 109.47306 * 300.00104 * 3 2 1 33 33 H 1.08995 * 109.47016 * 89.97603 * 7 6 5 34 34 H 1.09007 * 109.47036 * 209.97560 * 7 6 5 35 35 H 1.08996 * 109.46986 * 329.97863 * 7 6 5 36 36 H 1.07998 * 126.29544 * 180.24754 * 8 6 5 37 37 H 0.96996 * 120.00164 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47103 * 64.66430 * 13 12 10 39 39 H 1.08998 * 109.47218 * 304.66198 * 13 12 10 40 40 H 1.08999 * 110.71908 * 336.76021 * 16 14 13 41 41 H 1.09000 * 110.71633 * 100.02768 * 16 14 13 42 42 H 1.09002 * 110.96391 * 277.33660 * 17 16 14 43 43 H 1.09005 * 111.09857 * 153.45022 * 17 16 14 44 44 H 1.08998 * 110.36709 * 204.23305 * 18 17 16 45 45 H 1.09001 * 110.36536 * 82.01625 * 18 17 16 46 46 H 0.97000 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2763 1.1268 1.0565 6 7 5.6098 1.0215 0.6459 7 6 6.7736 0.9308 1.5312 8 6 5.6427 1.0126 -0.6963 9 6 4.3407 1.1205 -1.1422 10 6 3.8969 1.1542 -2.5477 11 8 2.7129 1.2470 -2.8094 12 7 4.8033 1.0823 -3.5425 13 6 4.3622 1.1152 -4.9391 14 6 5.5660 0.9025 -5.8592 15 1 6.0865 -0.0154 -5.5860 16 6 6.5285 2.1039 -5.7505 17 6 7.0116 2.2983 -7.2133 18 6 5.7354 1.9333 -8.0119 19 7 5.1191 0.8266 -7.2578 20 6 4.2711 -0.1164 -7.7746 21 1 4.0465 -1.0086 -7.2089 22 6 3.7003 0.0744 -9.0255 23 7 3.9738 1.1619 -9.7146 24 14 2.5442 -1.2121 -9.7307 25 1 2.4027 -2.3324 -8.7662 26 1 1.2139 -0.6001 -9.9777 27 1 3.0972 -1.7272 -11.0090 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.9813 -0.1162 1.7521 34 1 7.6387 1.3773 1.0410 35 1 6.5665 1.4637 2.4592 36 1 6.5256 0.9375 -1.3137 37 1 5.7476 1.0080 -3.3337 38 1 3.9072 2.0822 -5.1538 39 1 3.6315 0.3243 -5.1081 40 1 6.0005 2.9905 -5.3995 41 1 7.3668 1.8683 -5.0949 42 1 7.8281 1.6155 -7.4483 43 1 7.3043 3.3323 -7.3958 44 1 5.9979 1.6068 -9.0182 45 1 5.0581 2.7863 -8.0551 46 1 3.5747 1.2955 -10.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027979385.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:52 Heat of formation + Delta-G solvation = -2.670977 kcal Electronic energy + Delta-G solvation = -27419.489733 eV Core-core repulsion = 23538.864979 eV Total energy + Delta-G solvation = -3880.624754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.49630 -40.35002 -39.12741 -38.74802 -35.70532 -34.58759 -34.38156 -32.06336 -31.27058 -30.04666 -29.85346 -27.49847 -26.74501 -26.25416 -25.31294 -23.37661 -21.99948 -21.40587 -21.23612 -20.75354 -19.05232 -18.43594 -17.56655 -17.29443 -17.01329 -16.72072 -16.50846 -16.50578 -16.17243 -15.96320 -15.71690 -15.56721 -14.83627 -14.59226 -14.40264 -13.94523 -13.66706 -13.62461 -13.51796 -13.31510 -13.24525 -13.09168 -12.97087 -12.84371 -12.68016 -12.37822 -11.98956 -11.97170 -11.84412 -11.64195 -11.43223 -11.34931 -11.03912 -10.67888 -10.57940 -10.54085 -10.11119 -9.64477 -8.83801 -7.87158 -5.23974 0.52450 0.85399 1.40567 1.43905 1.46355 1.55498 2.25359 2.40926 2.52113 2.99851 3.32525 3.38597 3.70769 3.77282 3.95855 4.01081 4.05719 4.15924 4.25661 4.33237 4.39806 4.41750 4.48426 4.49450 4.50223 4.55997 4.61220 4.75492 4.79035 4.80540 4.82044 5.02673 5.05828 5.19763 5.23626 5.28596 5.43572 5.50516 5.62933 5.70522 5.81804 5.88296 6.12196 6.25491 6.42790 6.73817 7.11417 7.39464 7.78801 8.43509 9.23493 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.003277 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.879215 B = 8543.272803 C =10208.811258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.409 6.409 3 C 0.141 3.859 4 C 0.107 3.893 5 N -0.306 5.306 6 N -0.351 5.351 7 C 0.084 3.916 8 C 0.128 3.872 9 C -0.304 4.304 10 C 0.585 3.415 11 O -0.590 6.590 12 N -0.702 5.702 13 C 0.133 3.867 14 C 0.148 3.852 15 H 0.052 0.948 16 C -0.112 4.112 17 C -0.133 4.133 18 C 0.172 3.828 19 N -0.612 5.612 20 C -0.236 4.236 21 H 0.075 0.925 22 C -0.060 4.060 23 N -0.945 5.945 24 Si 0.969 3.031 25 H -0.269 1.269 26 H -0.295 1.295 27 H -0.287 1.287 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.237 0.763 37 H 0.414 0.586 38 H 0.035 0.965 39 H 0.029 0.971 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.036 0.964 45 H -0.010 1.010 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 1.954 23.939 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.063 3.937 4 C -0.060 4.060 5 N -0.130 5.130 6 N -0.129 5.129 7 C -0.054 4.054 8 C -0.025 4.025 9 C -0.319 4.319 10 C 0.373 3.627 11 O -0.471 6.471 12 N -0.354 5.354 13 C 0.006 3.994 14 C 0.041 3.959 15 H 0.070 0.930 16 C -0.150 4.150 17 C -0.171 4.171 18 C 0.047 3.953 19 N -0.336 5.336 20 C -0.366 4.366 21 H 0.092 0.908 22 C -0.253 4.253 23 N -0.593 5.593 24 Si 0.798 3.202 25 H -0.194 1.194 26 H -0.223 1.223 27 H -0.214 1.214 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.149 0.851 35 H 0.115 0.885 36 H 0.253 0.747 37 H 0.251 0.749 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.129 0.871 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.055 0.945 45 H 0.008 0.992 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.327 1.791 24.943 26.690 hybrid contribution -1.203 -0.381 -1.782 2.184 sum 8.124 1.410 23.160 24.584 Atomic orbital electron populations 1.22913 0.78928 1.03915 1.00871 1.87840 1.21850 1.27434 1.95618 1.20661 0.85474 0.85604 1.01952 1.22054 0.95958 0.97992 0.89952 1.77079 0.88146 1.25280 1.22493 1.48757 1.06196 1.52232 1.05711 1.22522 0.82837 1.05414 0.94645 1.23722 0.98811 0.94579 0.85382 1.20198 0.94149 1.24634 0.92930 1.17663 0.85194 0.75209 0.84584 1.90726 1.18795 1.52576 1.84997 1.45557 1.10371 1.74576 1.04943 1.21648 0.98587 0.99251 0.79879 1.21363 0.92403 0.98162 0.83996 0.92981 1.22650 0.98594 0.96550 0.97210 1.22885 0.97073 1.01538 0.95627 1.21293 0.90861 0.88390 0.94787 1.44771 1.53726 1.31050 1.04091 1.19321 1.18663 0.98082 1.00495 0.90764 1.25632 1.01468 0.99450 0.98798 1.70144 1.47855 1.28041 1.13288 0.85151 0.78359 0.78631 0.78097 1.19364 1.22259 1.21417 0.91912 0.94208 0.88374 0.90447 0.91162 0.88710 0.85073 0.88481 0.74661 0.74922 0.94660 0.95200 0.91496 0.87063 0.91060 0.89884 0.94527 0.99221 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -12.87 10.69 -148.98 -1.59 -14.46 16 3 C 0.14 4.14 5.97 71.24 0.43 4.56 16 4 C 0.11 3.12 6.89 43.51 0.30 3.42 16 5 N -0.31 -7.76 12.50 -46.67 -0.58 -8.34 16 6 N -0.35 -5.70 3.98 -367.77 -1.46 -7.17 16 7 C 0.08 0.40 11.44 127.77 1.46 1.86 16 8 C 0.13 2.02 10.99 84.28 0.93 2.95 16 9 C -0.30 -8.18 6.13 -20.15 -0.12 -8.31 16 10 C 0.58 19.73 7.81 86.67 0.68 20.41 16 11 O -0.59 -25.71 14.92 -4.05 -0.06 -25.77 16 12 N -0.70 -20.32 5.39 -466.37 -2.52 -22.84 16 13 C 0.13 5.19 5.09 86.38 0.44 5.63 16 14 C 0.15 5.52 3.22 45.34 0.15 5.67 16 15 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 16 C -0.11 -3.15 6.07 31.82 0.19 -2.95 16 17 C -0.13 -4.38 7.10 32.03 0.23 -4.15 16 18 C 0.17 8.26 5.42 86.86 0.47 8.73 16 19 N -0.61 -30.63 3.13 -668.26 -2.09 -32.72 16 20 C -0.24 -13.32 9.73 84.03 0.82 -12.50 16 21 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 22 C -0.06 -3.46 5.47 84.86 0.46 -3.00 16 23 N -0.94 -57.36 10.54 21.65 0.23 -57.13 16 24 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 2.30 6.56 -2.38 -0.02 2.28 16 33 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.13 -0.32 8.14 -2.38 -0.02 -0.34 16 35 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.24 1.03 7.46 -2.91 -0.02 1.00 16 37 H 0.41 7.82 7.17 -92.71 -0.66 7.16 16 38 H 0.03 1.55 8.03 -2.39 -0.02 1.53 16 39 H 0.03 1.40 7.86 -2.39 -0.02 1.38 16 40 H 0.07 1.88 7.78 -2.39 -0.02 1.86 16 41 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 44 H 0.04 2.00 6.86 -2.39 -0.02 1.98 16 45 H -0.01 -0.55 8.08 -2.39 -0.02 -0.57 16 46 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -86.60 379.87 1.94 -84.65 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.32 Total: 10.34 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 7.67 Total: 24.25 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -6.42 Total: -128.19 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.65 Total: -40.23 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -86.60 1.94 -84.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027979385.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.980 kcal (2) G-P(sol) polarization free energy of solvation -86.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds