Wall clock time and date at job start Fri Apr 10 2020 18:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00186 * 2 1 4 4 C 1.52992 * 109.47457 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47617 * 180.02562 * 4 3 2 6 6 C 1.34256 * 125.75502 * 124.99624 * 5 4 3 7 7 C 1.38044 * 107.41530 * 179.97438 * 6 5 4 8 8 C 1.47435 * 126.41242 * 180.02562 * 7 6 5 9 9 O 1.21599 * 119.99954 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99802 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99935 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47009 * 174.09839 * 11 10 8 13 13 H 1.09003 * 109.87917 * 56.80324 * 12 11 10 14 14 C 1.54325 * 109.88175 * 177.81936 * 12 11 10 15 15 C 1.55162 * 102.94285 * 141.60994 * 14 12 11 16 16 C 1.54911 * 101.58058 * 324.49842 * 15 14 12 17 17 N 1.47021 * 109.88369 * 295.62721 * 12 11 10 18 18 C 1.36934 * 125.64811 * 61.61946 * 17 12 11 19 19 H 1.07995 * 120.00267 * 324.04853 * 18 17 12 20 20 C 1.38816 * 119.99850 * 144.04315 * 18 17 12 21 21 N 1.31620 * 120.00170 * 162.28319 * 20 18 17 22 22 Si 1.86801 * 120.00155 * 342.28180 * 20 18 17 23 23 H 1.48504 * 109.46947 * 94.06782 * 22 20 18 24 24 H 1.48494 * 109.47068 * 214.07032 * 22 20 18 25 25 H 1.48503 * 109.47079 * 334.07374 * 22 20 18 26 26 C 1.41286 * 107.17239 * 0.02562 * 7 6 5 27 27 N 1.30455 * 108.02263 * 359.73530 * 26 7 6 28 28 H 1.08999 * 109.47144 * 299.99632 * 1 2 3 29 29 H 1.09001 * 109.47121 * 59.99352 * 1 2 3 30 30 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47376 * 300.00423 * 3 2 1 32 32 H 1.09008 * 109.47099 * 59.99996 * 3 2 1 33 33 H 1.09001 * 109.47072 * 300.00485 * 4 3 2 34 34 H 1.08998 * 109.47250 * 60.00371 * 4 3 2 35 35 H 1.08000 * 126.29305 * 0.02562 * 6 5 4 36 36 H 0.96999 * 119.99734 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46833 * 294.09463 * 11 10 8 38 38 H 1.08989 * 109.47297 * 54.09580 * 11 10 8 39 39 H 1.09005 * 110.72080 * 259.97379 * 14 12 11 40 40 H 1.09000 * 110.71878 * 23.24561 * 14 12 11 41 41 H 1.09004 * 111.00237 * 82.57422 * 15 14 12 42 42 H 1.09001 * 111.00179 * 206.42261 * 15 14 12 43 43 H 1.08998 * 110.36698 * 155.84853 * 16 15 14 44 44 H 1.08996 * 110.36248 * 278.05940 * 16 15 14 45 45 H 0.96992 * 120.00289 * 180.02562 * 21 20 18 46 46 H 1.08001 * 125.99052 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0216 2.9849 0.8925 7 6 5.3274 4.2833 0.5370 8 6 6.2638 5.1840 1.2338 9 8 6.8538 4.7991 2.2249 10 7 6.4659 6.4341 0.7722 11 6 7.3967 7.3289 1.4642 12 6 7.5536 8.6217 0.6612 13 1 6.5789 9.0864 0.5127 14 6 8.4901 9.5938 1.4092 15 6 9.3093 10.2400 0.2608 16 6 9.4583 9.0516 -0.7217 17 7 8.1752 8.3303 -0.6390 18 6 7.6497 7.5224 -1.6117 19 1 7.0976 6.6358 -1.3372 20 6 7.8265 7.8432 -2.9506 21 7 7.6430 6.9262 -3.8768 22 14 8.3249 9.5762 -3.4381 23 1 9.8022 9.6473 -3.5717 24 1 7.6931 9.9265 -4.7354 25 1 7.8758 10.5324 -2.3944 26 6 4.5750 4.5874 -0.6196 27 7 3.8726 3.5336 -0.9327 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8465 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 3.8574 0.6436 0.8891 34 1 3.8567 0.6440 -0.8909 35 1 5.4251 2.4405 1.7334 36 1 5.9955 6.7410 -0.0186 37 1 7.0076 7.5619 2.4554 38 1 8.3665 6.8408 1.5601 39 1 7.9143 10.3490 1.9443 40 1 9.1442 9.0509 2.0914 41 1 8.7579 11.0603 -0.1989 42 1 10.2828 10.5769 0.6170 43 1 9.6239 9.4161 -1.7356 44 1 10.2796 8.4049 -0.4130 45 1 7.7669 7.1501 -4.8124 46 1 4.5837 5.5260 -1.1538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028291769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:59 Heat of formation + Delta-G solvation = 29.528573 kcal Electronic energy + Delta-G solvation = -27258.614463 eV Core-core repulsion = 23379.385986 eV Total energy + Delta-G solvation = -3879.228476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.21045 -38.91635 -38.27397 -37.66398 -34.07166 -33.76732 -32.64470 -30.35314 -29.96801 -29.89087 -28.73009 -26.62689 -25.04671 -24.00459 -23.47719 -22.11758 -20.78391 -20.60435 -19.74375 -19.29519 -17.91225 -17.04355 -16.59575 -16.35888 -16.16418 -15.69526 -15.32424 -15.18150 -14.88219 -14.53434 -14.34050 -14.05355 -13.66586 -13.39856 -13.13973 -12.96821 -12.62721 -12.49229 -12.35400 -12.19819 -11.95223 -11.89816 -11.68939 -11.32836 -11.26674 -10.92636 -10.84652 -10.64764 -10.43922 -10.17872 -10.09214 -9.84185 -9.55657 -9.46765 -9.32419 -8.62517 -8.56685 -8.19404 -6.83775 -6.01783 -3.46709 1.70236 2.20787 2.47295 3.30388 3.44234 3.47031 3.49182 3.86017 4.01254 4.39084 4.50072 4.57944 4.85872 4.88193 4.93454 4.97428 4.97819 5.03805 5.15328 5.29147 5.32263 5.34733 5.36903 5.46205 5.46739 5.54634 5.65782 5.84165 5.97229 6.01585 6.13205 6.15999 6.28425 6.36954 6.42551 6.59673 6.60403 6.67182 6.86230 6.89030 6.89412 7.15741 7.68428 7.87023 8.24713 8.30606 8.78205 8.89446 9.62547 10.21946 11.12110 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.002941 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.405807 B = 9518.053382 C =10724.160043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.137 3.863 5 N -0.368 5.368 6 C 0.122 3.878 7 C -0.280 4.280 8 C 0.591 3.409 9 O -0.571 6.571 10 N -0.703 5.703 11 C 0.119 3.881 12 C 0.143 3.857 13 H 0.048 0.952 14 C -0.121 4.121 15 C -0.136 4.136 16 C 0.118 3.882 17 N -0.601 5.601 18 C -0.256 4.256 19 H 0.092 0.908 20 C 0.035 3.965 21 N -0.900 5.900 22 Si 0.888 3.112 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.269 1.269 26 C 0.097 3.903 27 N -0.299 5.299 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.186 0.814 36 H 0.411 0.589 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.031 0.969 45 H 0.264 0.736 46 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 -6.228 9.949 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C -0.027 4.027 4 C 0.015 3.985 5 N -0.148 5.148 6 C -0.028 4.028 7 C -0.295 4.295 8 C 0.378 3.622 9 O -0.453 6.453 10 N -0.355 5.355 11 C -0.007 4.007 12 C 0.036 3.964 13 H 0.066 0.934 14 C -0.159 4.159 15 C -0.175 4.175 16 C -0.007 4.007 17 N -0.327 5.327 18 C -0.384 4.384 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.541 5.541 22 Si 0.720 3.280 23 H -0.216 1.216 24 H -0.233 1.233 25 H -0.194 1.194 26 C -0.091 4.091 27 N -0.119 5.119 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.203 0.797 36 H 0.249 0.751 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.074 0.926 46 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -10.336 -7.395 9.548 15.896 hybrid contribution 0.600 1.604 -0.410 1.761 sum -9.736 -5.791 9.138 14.554 Atomic orbital electron populations 1.22768 0.80083 1.02982 1.00386 1.87772 1.20476 1.27105 1.95616 1.22671 0.92663 0.85166 1.02151 1.21406 0.92500 0.79084 1.05497 1.48274 1.33493 1.12049 1.21030 1.22885 0.91177 0.94381 0.94341 1.20361 1.09756 0.96308 1.03086 1.17193 0.80574 0.81387 0.83056 1.90696 1.51141 1.76117 1.27300 1.45955 1.45026 1.12773 1.31720 1.21890 0.93130 0.91269 0.94409 1.21286 0.96113 0.91781 0.87262 0.93421 1.22488 0.98207 0.97995 0.97258 1.22783 0.99429 0.98371 0.96888 1.21882 0.89955 0.91962 0.96874 1.44673 1.16939 1.56055 1.15019 1.18673 1.33593 1.02082 0.84073 0.89069 1.25438 0.98208 0.97085 0.95842 1.69812 1.51150 1.32415 1.00693 0.86726 0.77211 0.87285 0.76788 1.21640 1.23283 1.19360 1.24262 0.92671 0.97898 0.94251 1.77181 1.25200 0.96754 1.12725 0.93875 0.93678 0.89272 0.91336 0.92619 0.87568 0.88458 0.79721 0.75057 0.92960 0.91719 0.91441 0.91248 0.91633 0.91597 0.94151 0.95134 0.92612 0.78808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.73 10.70 -35.23 -0.38 -4.11 16 3 C 0.05 0.49 6.12 37.15 0.23 0.71 16 4 C 0.14 1.33 6.86 -4.04 -0.03 1.30 16 5 N -0.37 -4.90 3.65 -60.81 -0.22 -5.12 16 6 C 0.12 1.72 11.25 -16.56 -0.19 1.53 16 7 C -0.28 -4.72 6.13 -105.07 -0.64 -5.36 16 8 C 0.59 11.29 7.81 -12.51 -0.10 11.19 16 9 O -0.57 -12.20 16.89 5.28 0.09 -12.11 16 10 N -0.70 -13.14 4.36 -61.39 -0.27 -13.41 16 11 C 0.12 2.15 5.15 -4.05 -0.02 2.13 16 12 C 0.14 2.61 3.30 -66.96 -0.22 2.39 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C -0.12 -1.82 6.48 -24.89 -0.16 -1.98 16 15 C -0.14 -2.24 7.09 -24.58 -0.17 -2.42 16 16 C 0.12 2.45 6.24 -2.53 -0.02 2.44 16 17 N -0.60 -13.45 2.67 -162.58 -0.43 -13.88 16 18 C -0.26 -6.63 9.50 -15.06 -0.14 -6.77 16 19 H 0.09 2.42 5.53 -52.49 -0.29 2.13 16 20 C 0.04 0.97 5.45 -17.43 -0.10 0.88 16 21 N -0.90 -26.35 13.97 55.49 0.78 -25.58 16 22 Si 0.89 21.79 24.83 -169.99 -4.22 17.57 16 23 H -0.29 -7.06 6.81 56.52 0.39 -6.67 16 24 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 25 H -0.27 -6.36 7.06 56.52 0.40 -5.96 16 26 C 0.10 1.60 11.50 -16.98 -0.20 1.41 16 27 N -0.30 -4.78 12.34 30.86 0.38 -4.40 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.11 0.77 8.06 -51.93 -0.42 0.35 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.19 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.41 7.71 5.26 -40.82 -0.21 7.49 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.29 8.12 -51.94 -0.42 0.87 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.97 7.85 -51.93 -0.41 0.57 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.92 3.22 -51.93 -0.17 0.75 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.20 3.06 7.50 -52.49 -0.39 2.67 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -33.32 373.89 -6.25 -39.57 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.96 Total: 7.05 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -0.64 Total: 8.79 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.23 Total: -62.39 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.29 Total: -16.22 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.22 Total: 17.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.32 -6.25 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028291769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.098 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds