Wall clock time and date at job start Fri Apr 10 2020 18:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99685 * 2 1 4 4 C 1.52997 * 109.46875 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47055 * 179.97438 * 4 3 2 6 6 C 1.35030 * 124.88765 * 125.00147 * 5 4 3 7 7 C 1.35363 * 107.23171 * 179.97438 * 6 5 4 8 8 C 1.41499 * 105.50165 * 359.97438 * 7 6 5 9 9 C 1.47718 * 126.51586 * 180.02562 * 8 7 6 10 10 O 1.21568 * 119.99792 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99817 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99825 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47034 * 179.97438 * 12 11 9 14 14 H 1.09001 * 110.63882 * 305.70338 * 13 12 11 15 15 C 1.55148 * 110.71799 * 182.56013 * 13 12 11 16 16 C 1.54914 * 101.57962 * 206.13551 * 15 13 12 17 17 N 1.47428 * 104.83255 * 37.01165 * 16 15 13 18 18 C 1.36937 * 125.64860 * 155.90354 * 17 16 15 19 19 H 1.07992 * 120.00112 * 342.05096 * 18 17 16 20 20 C 1.38811 * 119.99837 * 162.05304 * 18 17 16 21 21 N 1.31618 * 120.00257 * 156.24182 * 20 18 17 22 22 Si 1.86807 * 119.99883 * 336.24451 * 20 18 17 23 23 H 1.48497 * 109.47285 * 84.66896 * 22 20 18 24 24 H 1.48503 * 109.46827 * 204.67082 * 22 20 18 25 25 H 1.48499 * 109.47102 * 324.66906 * 22 20 18 26 26 C 1.47316 * 108.73187 * 335.71545 * 17 16 15 27 27 N 1.28470 * 124.88254 * 304.69087 * 5 4 3 28 28 H 1.09003 * 109.46989 * 60.00456 * 1 2 3 29 29 H 1.09002 * 109.46843 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47441 * 300.00155 * 1 2 3 31 31 H 1.09005 * 109.47049 * 299.99754 * 3 2 1 32 32 H 1.08995 * 109.47471 * 59.99785 * 3 2 1 33 33 H 1.08996 * 109.47130 * 299.99463 * 4 3 2 34 34 H 1.09004 * 109.47552 * 59.99720 * 4 3 2 35 35 H 1.08003 * 126.38532 * 359.93497 * 6 5 4 36 36 H 1.08007 * 127.24465 * 179.97438 * 7 6 5 37 37 H 0.97002 * 119.99777 * 359.97438 * 11 9 8 38 38 H 1.08994 * 109.47138 * 299.99600 * 12 11 9 39 39 H 1.09003 * 109.46900 * 59.99884 * 12 11 9 40 40 H 1.08999 * 111.00983 * 324.20608 * 15 13 12 41 41 H 1.09004 * 111.00965 * 88.02707 * 15 13 12 42 42 H 1.09003 * 110.36670 * 155.84613 * 16 15 13 43 43 H 1.08999 * 110.36975 * 278.05980 * 16 15 13 44 44 H 0.97001 * 120.00081 * 179.97438 * 21 20 18 45 45 H 1.09007 * 110.06281 * 241.87050 * 26 17 16 46 46 H 1.09002 * 109.85145 * 120.61660 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0261 2.9705 0.9055 7 6 5.3359 4.2444 0.5684 8 6 4.5735 4.5250 -0.5901 9 6 4.5596 5.7933 -1.3473 10 8 5.2521 6.7247 -0.9856 11 7 3.7793 5.9177 -2.4391 12 6 3.7651 7.1757 -3.1898 13 6 2.8043 7.0521 -4.3741 14 1 3.0574 6.1858 -4.9853 15 6 2.8152 8.3480 -5.2272 16 6 1.4053 8.3103 -5.8679 17 7 0.5272 7.7660 -4.8162 18 6 -0.8242 7.9660 -4.7222 19 1 -1.2888 8.7775 -5.2624 20 6 -1.5969 7.1257 -3.9325 21 7 -2.7508 7.5452 -3.4582 22 14 -0.9992 5.3992 -3.5430 23 1 -0.0900 5.4431 -2.3697 24 1 -2.1632 4.5301 -3.2351 25 1 -0.2691 4.8521 -4.7147 26 6 1.3431 6.9674 -3.8852 27 7 3.8817 3.4380 -0.8679 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 1.6885 1.8465 0.8899 33 1 3.8573 0.6438 0.8891 34 1 3.8567 0.6439 -0.8908 35 1 5.4207 2.4157 1.7439 36 1 6.0208 4.9070 1.0768 37 1 3.2271 5.1743 -2.7279 38 1 3.4360 7.9844 -2.5374 39 1 4.7686 7.3909 -3.5573 40 1 2.9346 9.2295 -4.5974 41 1 3.5928 8.3072 -5.9901 42 1 1.0874 9.3155 -6.1448 43 1 1.4028 7.6583 -6.7415 44 1 -3.2909 6.9578 -2.9067 45 1 1.0097 5.9296 -3.8914 46 1 1.2646 7.3780 -2.8785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028679827.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:07 Heat of formation + Delta-G solvation = 33.165814 kcal Electronic energy + Delta-G solvation = -27311.825403 eV Core-core repulsion = 23432.754649 eV Total energy + Delta-G solvation = -3879.070754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.88865 -39.44243 -38.37680 -37.89636 -34.66529 -34.27129 -32.55944 -31.09236 -30.46012 -29.74266 -28.63384 -26.84135 -25.88078 -24.50089 -23.48462 -22.23423 -21.63962 -20.50843 -20.24347 -19.64611 -18.13556 -17.23303 -16.92316 -16.63334 -16.37136 -16.24052 -15.90467 -15.64988 -15.18429 -14.69165 -14.52323 -14.11100 -13.92086 -13.56138 -13.48442 -13.24132 -13.19502 -12.77550 -12.46881 -12.41625 -12.07454 -11.91367 -11.75607 -11.55416 -11.29486 -11.08539 -10.94418 -10.70491 -10.56755 -10.20845 -10.15861 -10.02638 -9.85582 -9.50973 -9.34293 -9.30317 -8.90921 -8.62240 -7.05885 -5.95226 -3.22930 1.43282 1.92367 2.00826 3.20611 3.32986 3.38746 3.43352 3.46370 3.47560 4.05994 4.38880 4.51176 4.54166 4.54333 4.70398 4.83259 4.96615 4.98183 5.05447 5.09758 5.10391 5.17454 5.27448 5.29500 5.35204 5.44049 5.47104 5.56656 5.67434 5.84831 5.89608 6.06015 6.11330 6.18518 6.30504 6.42107 6.44867 6.51440 6.60197 6.63165 6.77113 6.80795 7.47168 7.71783 7.76233 8.26278 8.31192 8.83776 9.69407 10.18897 11.21385 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009437 B = 0.004263 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.337698 B = 6566.640755 C = 9009.224457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.046 3.954 4 C 0.126 3.874 5 N -0.282 5.282 6 C -0.016 4.016 7 C -0.177 4.177 8 C -0.011 4.011 9 C 0.603 3.397 10 O -0.536 6.536 11 N -0.714 5.714 12 C 0.132 3.868 13 C -0.116 4.116 14 H 0.080 0.920 15 C -0.121 4.121 16 C 0.132 3.868 17 N -0.611 5.611 18 C -0.241 4.241 19 H 0.093 0.907 20 C 0.021 3.979 21 N -0.907 5.907 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.306 1.306 25 H -0.280 1.280 26 C 0.125 3.875 27 N -0.260 5.260 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.184 0.816 36 H 0.164 0.836 37 H 0.407 0.593 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.262 0.738 45 H 0.024 0.976 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.478 -14.324 7.847 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.031 4.031 4 C 0.005 3.995 5 N -0.072 5.072 6 C -0.158 4.158 7 C -0.205 4.205 8 C -0.172 4.172 9 C 0.387 3.613 10 O -0.411 6.411 11 N -0.364 5.364 12 C 0.009 3.991 13 C -0.136 4.136 14 H 0.099 0.901 15 C -0.160 4.160 16 C 0.007 3.993 17 N -0.338 5.338 18 C -0.368 4.368 19 H 0.111 0.889 20 C -0.178 4.178 21 N -0.551 5.551 22 Si 0.717 3.283 23 H -0.213 1.213 24 H -0.234 1.234 25 H -0.207 1.207 26 C 0.000 4.000 27 N -0.096 5.096 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.201 0.799 36 H 0.182 0.818 37 H 0.242 0.758 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.041 0.959 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.989 -14.373 7.427 22.054 hybrid contribution 0.165 -1.072 0.766 1.328 sum 15.154 -15.445 8.193 23.137 Atomic orbital electron populations 1.22828 0.79521 1.03216 1.00879 1.87741 1.20912 1.26518 1.95690 1.22673 0.91991 0.85788 1.02695 1.21685 0.93210 0.78397 1.06182 1.45327 1.31236 1.11627 1.19007 1.22887 0.97790 0.96695 0.98421 1.21789 1.04516 0.95891 0.98290 1.22027 1.01567 0.93979 0.99598 1.16855 0.79760 0.84887 0.79769 1.90782 1.42742 1.39252 1.68363 1.45926 1.45061 1.17384 1.28063 1.21474 0.99513 0.85654 0.92502 1.22460 0.95487 0.99700 0.95927 0.90134 1.22728 0.98171 0.96483 0.98583 1.21615 0.88625 0.97695 0.91363 1.44873 1.04181 1.59378 1.25337 1.18683 0.79753 1.10750 1.27617 0.88900 1.24946 0.95733 0.98292 0.98781 1.69864 1.14340 1.35662 1.35208 0.86915 0.76066 0.87272 0.78045 1.21265 1.23400 1.20696 1.21754 0.88521 0.95087 0.94633 1.73535 1.22429 0.97889 1.15748 0.93304 0.89015 0.93634 0.91093 0.92308 0.86868 0.87828 0.79912 0.81813 0.75800 0.90699 0.91059 0.90819 0.91185 0.93140 0.95787 0.92799 0.95919 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -3.76 10.70 -35.23 -0.38 -4.14 16 3 C 0.05 0.43 6.05 37.16 0.22 0.66 16 4 C 0.13 0.94 6.76 -4.04 -0.03 0.91 16 5 N -0.28 -2.91 3.40 -61.33 -0.21 -3.12 16 6 C -0.02 -0.14 11.40 -17.17 -0.20 -0.34 16 7 C -0.18 -2.05 10.81 -39.37 -0.43 -2.48 16 8 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 9 C 0.60 9.89 7.82 -12.39 -0.10 9.79 16 10 O -0.54 -9.96 16.93 5.31 0.09 -9.87 16 11 N -0.71 -11.22 5.43 -61.29 -0.33 -11.56 16 12 C 0.13 2.03 5.00 -4.04 -0.02 2.01 16 13 C -0.12 -1.92 2.98 -88.79 -0.26 -2.19 16 14 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.87 6.54 -24.58 -0.16 -2.03 16 16 C 0.13 2.58 7.23 -2.52 -0.02 2.56 16 17 N -0.61 -14.96 3.22 -169.83 -0.55 -15.50 16 18 C -0.24 -6.95 10.56 -15.06 -0.16 -7.10 16 19 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 20 C 0.02 0.62 5.43 -17.43 -0.09 0.52 16 21 N -0.91 -28.31 13.97 55.49 0.78 -27.54 16 22 Si 0.88 22.96 24.39 -169.99 -4.15 18.81 16 23 H -0.29 -7.17 6.83 56.52 0.39 -6.78 16 24 H -0.31 -7.97 7.11 56.52 0.40 -7.57 16 25 H -0.28 -7.15 6.87 56.52 0.39 -6.76 16 26 C 0.12 2.73 4.55 -2.90 -0.01 2.72 16 27 N -0.26 -3.53 11.37 33.42 0.38 -3.15 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.11 0.51 8.04 -51.93 -0.42 0.09 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.18 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.16 1.69 8.06 -52.48 -0.42 1.26 16 37 H 0.41 6.29 8.13 -40.82 -0.33 5.95 16 38 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 45 H 0.02 0.54 3.55 -51.93 -0.18 0.36 16 46 H 0.04 1.00 7.73 -51.93 -0.40 0.60 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -35.87 378.98 -6.63 -42.50 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.25 Total: 2.19 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.73 Total: 5.66 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.07 Total: -60.87 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.29 Total: -14.01 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.15 Total: 18.81 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.87 -6.63 -42.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028679827.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.665 kcal (2) G-P(sol) polarization free energy of solvation -35.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds