Wall clock time and date at job start Fri Apr 10 2020 18:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99685 * 2 1 4 4 C 1.52997 * 109.46875 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47055 * 179.97438 * 4 3 2 6 6 C 1.35030 * 124.88765 * 125.00147 * 5 4 3 7 7 C 1.35363 * 107.23171 * 179.97438 * 6 5 4 8 8 C 1.41499 * 105.50165 * 359.97438 * 7 6 5 9 9 C 1.47718 * 126.51586 * 180.02562 * 8 7 6 10 10 O 1.21568 * 119.99792 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99817 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99825 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47034 * 179.97438 * 12 11 9 14 14 H 1.09001 * 110.63882 * 305.70338 * 13 12 11 15 15 C 1.55148 * 110.71799 * 182.56013 * 13 12 11 16 16 C 1.54914 * 101.57962 * 206.13551 * 15 13 12 17 17 N 1.47428 * 104.83255 * 37.01165 * 16 15 13 18 18 C 1.36937 * 125.64860 * 155.90354 * 17 16 15 19 19 H 1.07992 * 120.00112 * 342.05096 * 18 17 16 20 20 C 1.38811 * 119.99837 * 162.05304 * 18 17 16 21 21 N 1.31618 * 120.00257 * 156.24182 * 20 18 17 22 22 Si 1.86807 * 119.99883 * 336.24451 * 20 18 17 23 23 H 1.48497 * 109.47285 * 84.66896 * 22 20 18 24 24 H 1.48503 * 109.46827 * 204.67082 * 22 20 18 25 25 H 1.48499 * 109.47102 * 324.66906 * 22 20 18 26 26 C 1.47316 * 108.73187 * 335.71545 * 17 16 15 27 27 N 1.28470 * 124.88254 * 304.69087 * 5 4 3 28 28 H 1.09003 * 109.46989 * 60.00456 * 1 2 3 29 29 H 1.09002 * 109.46843 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47441 * 300.00155 * 1 2 3 31 31 H 1.09005 * 109.47049 * 299.99754 * 3 2 1 32 32 H 1.08995 * 109.47471 * 59.99785 * 3 2 1 33 33 H 1.08996 * 109.47130 * 299.99463 * 4 3 2 34 34 H 1.09004 * 109.47552 * 59.99720 * 4 3 2 35 35 H 1.08003 * 126.38532 * 359.93497 * 6 5 4 36 36 H 1.08007 * 127.24465 * 179.97438 * 7 6 5 37 37 H 0.97002 * 119.99777 * 359.97438 * 11 9 8 38 38 H 1.08994 * 109.47138 * 299.99600 * 12 11 9 39 39 H 1.09003 * 109.46900 * 59.99884 * 12 11 9 40 40 H 1.08999 * 111.00983 * 324.20608 * 15 13 12 41 41 H 1.09004 * 111.00965 * 88.02707 * 15 13 12 42 42 H 1.09003 * 110.36670 * 155.84613 * 16 15 13 43 43 H 1.08999 * 110.36975 * 278.05980 * 16 15 13 44 44 H 0.97001 * 120.00081 * 179.97438 * 21 20 18 45 45 H 1.09007 * 110.06281 * 241.87050 * 26 17 16 46 46 H 1.09002 * 109.85145 * 120.61660 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0261 2.9705 0.9055 7 6 5.3359 4.2444 0.5684 8 6 4.5735 4.5250 -0.5901 9 6 4.5596 5.7933 -1.3473 10 8 5.2521 6.7247 -0.9856 11 7 3.7793 5.9177 -2.4391 12 6 3.7651 7.1757 -3.1898 13 6 2.8043 7.0521 -4.3741 14 1 3.0574 6.1858 -4.9853 15 6 2.8152 8.3480 -5.2272 16 6 1.4053 8.3103 -5.8679 17 7 0.5272 7.7660 -4.8162 18 6 -0.8242 7.9660 -4.7222 19 1 -1.2888 8.7775 -5.2624 20 6 -1.5969 7.1257 -3.9325 21 7 -2.7508 7.5452 -3.4582 22 14 -0.9992 5.3992 -3.5430 23 1 -0.0900 5.4431 -2.3697 24 1 -2.1632 4.5301 -3.2351 25 1 -0.2691 4.8521 -4.7147 26 6 1.3431 6.9674 -3.8852 27 7 3.8817 3.4380 -0.8679 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 1.6885 1.8465 0.8899 33 1 3.8573 0.6438 0.8891 34 1 3.8567 0.6439 -0.8908 35 1 5.4207 2.4157 1.7439 36 1 6.0208 4.9070 1.0768 37 1 3.2271 5.1743 -2.7279 38 1 3.4360 7.9844 -2.5374 39 1 4.7686 7.3909 -3.5573 40 1 2.9346 9.2295 -4.5974 41 1 3.5928 8.3072 -5.9901 42 1 1.0874 9.3155 -6.1448 43 1 1.4028 7.6583 -6.7415 44 1 -3.2909 6.9578 -2.9067 45 1 1.0097 5.9296 -3.8914 46 1 1.2646 7.3780 -2.8785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028679827.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:06 Heat of formation + Delta-G solvation = 5.534500 kcal Electronic energy + Delta-G solvation = -27313.023586 eV Core-core repulsion = 23432.754649 eV Total energy + Delta-G solvation = -3880.268938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.72345 -40.71614 -39.46257 -39.05896 -36.11020 -35.04656 -34.50296 -32.39607 -31.70113 -30.72690 -30.06802 -27.80379 -27.20885 -25.87132 -24.74678 -23.21216 -22.48193 -22.05705 -21.70712 -20.78381 -19.11033 -18.91479 -18.05505 -17.84089 -17.49074 -17.11987 -17.05595 -16.70828 -16.41531 -15.94101 -15.64667 -15.48720 -15.08250 -15.03021 -14.76757 -14.38905 -14.26813 -14.20524 -14.02532 -13.49798 -13.26592 -13.07693 -13.06357 -12.70547 -12.68285 -12.46527 -12.42887 -12.15202 -11.95779 -11.86687 -11.61970 -11.33009 -11.23572 -10.87564 -10.80795 -10.42962 -10.19638 -10.03967 -9.11168 -8.23754 -5.47264 0.43666 1.13348 1.22713 1.28742 1.29387 1.39372 2.09305 2.31123 2.35374 2.69711 2.96619 3.27193 3.33637 3.63115 3.71103 3.75585 3.79731 3.83757 3.95266 4.08470 4.15070 4.33975 4.36573 4.39697 4.44303 4.53147 4.54902 4.59430 4.62011 4.69687 4.72645 4.75751 4.77429 4.84367 5.01778 5.08376 5.14402 5.25827 5.34172 5.43069 5.65061 5.77222 5.91157 6.05532 6.31886 6.72213 6.80572 7.06786 7.50103 8.07346 8.96620 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009437 B = 0.004263 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.337698 B = 6566.640755 C = 9009.224457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.047 3.953 4 C 0.125 3.875 5 N -0.279 5.279 6 C 0.011 3.989 7 C -0.198 4.198 8 C -0.043 4.043 9 C 0.600 3.400 10 O -0.566 6.566 11 N -0.714 5.714 12 C 0.138 3.862 13 C -0.100 4.100 14 H 0.102 0.898 15 C -0.105 4.105 16 C 0.122 3.878 17 N -0.631 5.631 18 C -0.236 4.236 19 H 0.063 0.937 20 C -0.038 4.038 21 N -0.953 5.953 22 Si 0.950 3.050 23 H -0.279 1.279 24 H -0.308 1.308 25 H -0.271 1.271 26 C 0.121 3.879 27 N -0.286 5.286 28 H 0.037 0.963 29 H 0.111 0.889 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.154 0.846 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.170 0.830 37 H 0.408 0.592 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.048 0.952 43 H 0.037 0.963 44 H 0.262 0.738 45 H 0.012 0.988 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.367 -16.747 8.373 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.031 4.031 4 C 0.006 3.994 5 N -0.068 5.068 6 C -0.131 4.131 7 C -0.226 4.226 8 C -0.202 4.202 9 C 0.386 3.614 10 O -0.444 6.444 11 N -0.364 5.364 12 C 0.014 3.986 13 C -0.120 4.120 14 H 0.120 0.880 15 C -0.144 4.144 16 C -0.002 4.002 17 N -0.358 5.358 18 C -0.364 4.364 19 H 0.081 0.919 20 C -0.233 4.233 21 N -0.600 5.600 22 Si 0.781 3.219 23 H -0.206 1.206 24 H -0.237 1.237 25 H -0.197 1.197 26 C -0.004 4.004 27 N -0.123 5.123 28 H 0.056 0.944 29 H 0.129 0.871 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.172 0.828 34 H 0.129 0.871 35 H 0.251 0.749 36 H 0.188 0.812 37 H 0.243 0.757 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.133 0.867 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.029 0.971 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 17.910 -16.801 7.915 25.801 hybrid contribution -0.773 -0.291 0.591 1.016 sum 17.137 -17.092 8.507 25.655 Atomic orbital electron populations 1.22976 0.79010 1.04476 1.00602 1.87727 1.21553 1.26460 1.95637 1.22627 0.93527 0.85579 1.01364 1.21964 0.91610 0.77245 1.08601 1.45654 1.30946 1.11830 1.18399 1.23580 0.95612 0.95676 0.98205 1.22044 1.05081 0.97504 0.97947 1.21935 1.03523 0.93728 1.00989 1.17185 0.79132 0.85437 0.79663 1.90746 1.44025 1.40497 1.69164 1.45961 1.44928 1.17411 1.28135 1.21417 1.00231 0.85169 0.91748 1.22389 0.91746 1.01277 0.96548 0.87964 1.22712 0.96589 0.95895 0.99176 1.21896 0.90010 0.97410 0.90872 1.45042 1.03300 1.59904 1.27557 1.18683 0.82138 1.09515 1.26093 0.91875 1.25579 0.96274 1.01788 0.99635 1.69985 1.16116 1.36867 1.37080 0.85870 0.75421 0.82363 0.78263 1.20590 1.23701 1.19672 1.21814 0.91735 0.93535 0.93307 1.73473 1.23093 0.98407 1.17279 0.94420 0.87065 0.93112 0.93718 0.92469 0.82840 0.87062 0.74937 0.81215 0.75685 0.92357 0.88715 0.90558 0.86711 0.93338 0.94551 0.92931 0.97052 0.96362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.40 -6.90 10.70 -148.98 -1.59 -8.50 16 3 C 0.05 0.81 6.05 71.98 0.44 1.24 16 4 C 0.13 1.47 6.76 86.38 0.58 2.06 16 5 N -0.28 -5.00 3.40 -347.96 -1.18 -6.18 16 6 C 0.01 0.16 11.40 83.54 0.95 1.11 16 7 C -0.20 -4.25 10.81 22.41 0.24 -4.00 16 8 C -0.04 -1.20 7.13 42.46 0.30 -0.90 16 9 C 0.60 19.55 7.82 86.75 0.68 20.23 16 10 O -0.57 -21.06 16.93 -3.93 -0.07 -21.12 16 11 N -0.71 -21.93 5.43 -466.09 -2.53 -24.46 16 12 C 0.14 4.00 5.00 86.38 0.43 4.44 16 13 C -0.10 -3.07 2.98 -9.61 -0.03 -3.10 16 14 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 15 C -0.11 -2.92 6.54 31.98 0.21 -2.71 16 16 C 0.12 4.56 7.23 86.86 0.63 5.19 16 17 N -0.63 -30.89 3.22 -691.22 -2.22 -33.11 16 18 C -0.24 -13.96 10.56 84.03 0.89 -13.07 16 19 H 0.06 4.01 8.06 -2.91 -0.02 3.98 16 20 C -0.04 -2.32 5.43 84.86 0.46 -1.86 16 21 N -0.95 -61.71 13.97 21.65 0.30 -61.41 16 22 Si 0.95 48.80 24.39 68.60 1.67 50.47 16 23 H -0.28 -13.84 6.83 99.48 0.68 -13.16 16 24 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 25 H -0.27 -13.30 6.87 99.48 0.68 -12.62 16 26 C 0.12 5.21 4.55 86.67 0.39 5.60 16 27 N -0.29 -7.42 11.37 -48.17 -0.55 -7.97 16 28 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 1.00 8.09 -2.38 -0.02 0.98 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.15 0.60 8.04 -2.39 -0.02 0.58 16 34 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.23 0.72 8.06 -2.91 -0.02 0.70 16 36 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 37 H 0.41 12.31 8.13 -92.71 -0.75 11.56 16 38 H 0.06 1.90 8.00 -2.39 -0.02 1.89 16 39 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.08 2.11 8.05 -2.39 -0.02 2.09 16 41 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 45 H 0.01 0.55 3.55 -2.38 -0.01 0.54 16 46 H 0.02 0.87 7.73 -2.39 -0.02 0.85 16 Total: -1.00 -81.93 378.98 1.43 -80.50 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.18 Total: 15.91 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 7.43 Total: 15.86 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -6.18 Total: -133.12 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.66 Total: -29.62 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.67 Total: 50.47 kcal Total: -81.93 1.43 -80.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028679827.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.035 kcal (2) G-P(sol) polarization free energy of solvation -81.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds