Wall clock time and date at job start Fri Apr 10 2020 18:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46015 * 118.53783 * 2 1 4 4 C 1.52978 * 110.04133 * 161.81598 * 3 2 1 5 5 N 1.47187 * 108.73230 * 50.29144 * 4 3 2 6 6 C 1.46900 * 110.99878 * 167.63403 * 5 4 3 7 7 C 1.50703 * 109.47064 * 293.76520 * 6 5 4 8 8 O 1.21278 * 120.00075 * 354.03760 * 7 6 5 9 9 N 1.34780 * 120.00142 * 174.03313 * 7 6 5 10 10 C 1.47864 * 126.94144 * 0.02702 * 9 7 6 11 11 C 1.56019 * 105.10447 * 181.97927 * 10 9 7 12 12 H 1.09002 * 116.24748 * 158.83695 * 11 10 9 13 13 C 1.57081 * 99.60560 * 32.80585 * 11 10 9 14 14 C 1.49280 * 126.94543 * 179.71369 * 9 7 6 15 15 H 1.09002 * 116.15627 * 16.72549 * 14 9 7 16 16 C 1.56019 * 104.09343 * 246.71857 * 14 9 7 17 17 N 1.49247 * 105.36775 * 288.93962 * 16 14 9 18 18 C 1.36941 * 127.75354 * 182.18335 * 17 16 14 19 19 H 1.08001 * 119.99867 * 183.50235 * 18 17 16 20 20 C 1.38809 * 119.99817 * 3.50776 * 18 17 16 21 21 N 1.31616 * 119.99875 * 352.55122 * 20 18 17 22 22 Si 1.86801 * 120.00111 * 172.55521 * 20 18 17 23 23 H 1.48491 * 109.47307 * 94.91129 * 22 20 18 24 24 H 1.48497 * 109.47156 * 214.91543 * 22 20 18 25 25 H 1.48500 * 109.46938 * 334.91429 * 22 20 18 26 26 C 1.46880 * 110.18546 * 291.01232 * 5 4 3 27 27 C 1.33719 * 118.53857 * 179.97438 * 2 1 3 28 28 O 1.21281 * 118.62294 * 1.70825 * 27 2 1 29 29 H 1.09002 * 109.47023 * 90.00564 * 1 2 3 30 30 H 1.09005 * 109.47030 * 210.00409 * 1 2 3 31 31 H 1.08998 * 109.47367 * 330.00442 * 1 2 3 32 32 H 1.08998 * 109.37244 * 41.64128 * 3 2 1 33 33 H 1.09003 * 109.27770 * 281.93160 * 3 2 1 34 34 H 1.09005 * 109.58926 * 170.06653 * 4 3 2 35 35 H 1.09000 * 109.59373 * 290.51423 * 4 3 2 36 36 H 1.08992 * 109.47298 * 53.76607 * 6 5 4 37 37 H 1.09000 * 109.46935 * 173.77280 * 6 5 4 38 38 H 1.09003 * 110.31888 * 300.88893 * 10 9 7 39 39 H 1.09003 * 110.31968 * 63.07228 * 10 9 7 40 40 H 1.09001 * 112.36860 * 64.27321 * 13 11 10 41 41 H 1.09000 * 112.36912 * 191.62970 * 13 11 10 42 42 H 1.09004 * 110.31505 * 47.67249 * 16 14 9 43 43 H 1.09001 * 110.32039 * 169.85830 * 16 14 9 44 44 H 0.97001 * 119.99831 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.37583 * 290.11737 * 26 5 4 46 46 H 1.09007 * 109.39330 * 170.43434 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2827 0.0000 4 6 3.6125 1.0910 0.4485 5 7 4.2095 -0.0016 -0.3365 6 6 5.6677 -0.0388 -0.1627 7 6 6.2769 1.2024 -0.7622 8 8 5.5816 1.9829 -1.3772 9 7 7.5944 1.4453 -0.6148 10 6 8.5787 0.6041 0.0994 11 6 9.9273 1.3821 -0.0010 12 1 10.6852 1.1309 0.7410 13 6 9.3825 2.8552 0.0241 14 6 8.3561 2.6145 -1.1451 15 1 7.7621 3.4735 -1.4570 16 6 9.3123 1.9935 -2.2102 17 7 10.3296 1.2289 -1.4305 18 6 11.4100 0.5388 -1.9120 19 1 12.0385 -0.0210 -1.2352 20 6 11.6973 0.5588 -3.2699 21 7 10.8540 1.1162 -4.1128 22 14 13.2808 -0.2054 -3.9009 23 1 13.0179 -1.6005 -4.3363 24 1 13.7877 0.5850 -5.0513 25 1 14.2955 -0.2080 -2.8167 26 6 3.6018 -1.2853 0.0378 27 6 2.1038 -1.1747 0.0005 28 8 1.4466 -2.1935 -0.0308 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6602 1.9675 0.6832 33 1 2.1476 1.7005 -1.0067 34 1 4.1721 2.0110 0.2791 35 1 3.6367 0.8356 1.5079 36 1 5.9060 -0.0836 0.8999 37 1 6.0709 -0.9193 -0.6629 38 1 8.2876 0.4843 1.1430 39 1 8.6663 -0.3691 -0.3838 40 1 8.8923 3.1002 0.9663 41 1 10.1481 3.5851 -0.2391 42 1 8.7612 1.3200 -2.8667 43 1 9.7934 2.7802 -2.7914 44 1 11.0550 1.1305 -5.0616 45 1 3.9196 -1.5560 1.0447 46 1 3.9252 -2.0564 -0.6615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032485935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:11 Heat of formation + Delta-G solvation = 18.754070 kcal Electronic energy + Delta-G solvation = -28162.040011 eV Core-core repulsion = 24282.344317 eV Total energy + Delta-G solvation = -3879.695694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75545 -40.02167 -38.31145 -36.81369 -35.40737 -33.62598 -31.72773 -30.34587 -29.76083 -28.91744 -28.54342 -26.54621 -25.25242 -24.77409 -23.61545 -22.80875 -20.51770 -19.88887 -18.87461 -18.49312 -17.56286 -16.92654 -16.85030 -16.33376 -16.21208 -15.74759 -15.40382 -14.80672 -14.68866 -14.58942 -14.13432 -13.80811 -13.62902 -13.38962 -13.16717 -12.97245 -12.71025 -12.29804 -12.18721 -12.12014 -11.92697 -11.71732 -11.68006 -11.44907 -11.33586 -11.05381 -10.88393 -10.84925 -10.62949 -10.31681 -10.12442 -10.11093 -9.67710 -9.46052 -8.95600 -8.76309 -8.63716 -8.05892 -6.97821 -5.82532 -3.15247 2.39568 2.76861 2.95444 3.05945 3.34738 3.40193 3.42726 3.70712 4.27605 4.37925 4.51943 4.63213 4.83862 4.94056 4.97921 5.06277 5.10665 5.12261 5.15903 5.25875 5.28017 5.33253 5.39456 5.49308 5.55760 5.56842 5.57915 5.69342 5.72114 5.83635 6.07780 6.10653 6.20753 6.34027 6.37236 6.51861 6.53146 6.60884 6.65504 7.16436 7.35822 7.40333 7.65948 7.92049 8.00723 8.04311 8.53995 9.03015 9.66273 10.36264 11.30876 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.002824 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.371989 B = 9912.379549 C =10372.543265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.606 5.606 3 C 0.122 3.878 4 C 0.034 3.966 5 N -0.513 5.513 6 C 0.040 3.960 7 C 0.529 3.471 8 O -0.537 6.537 9 N -0.607 5.607 10 C 0.082 3.918 11 C 0.140 3.860 12 H 0.105 0.895 13 C -0.152 4.152 14 C 0.102 3.898 15 H 0.114 0.886 16 C 0.171 3.829 17 N -0.597 5.597 18 C -0.233 4.233 19 H 0.081 0.919 20 C -0.004 4.004 21 N -0.916 5.916 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.040 3.960 27 C 0.525 3.475 28 O -0.553 6.553 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.254 0.746 45 H 0.073 0.927 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.722 1.686 13.166 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.340 5.340 3 C -0.001 4.001 4 C -0.094 4.094 5 N -0.239 5.239 6 C -0.090 4.090 7 C 0.317 3.683 8 O -0.415 6.415 9 N -0.342 5.342 10 C -0.044 4.044 11 C 0.031 3.969 12 H 0.122 0.878 13 C -0.192 4.192 14 C 0.000 4.000 15 H 0.132 0.868 16 C 0.047 3.953 17 N -0.322 5.322 18 C -0.360 4.360 19 H 0.099 0.901 20 C -0.201 4.201 21 N -0.562 5.562 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.090 4.090 27 C 0.313 3.687 28 O -0.431 6.431 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.487 1.565 12.034 18.898 hybrid contribution 1.070 -0.617 0.322 1.277 sum -13.417 0.949 12.356 18.264 Atomic orbital electron populations 1.21689 0.79375 1.02996 1.02196 1.47386 1.07358 1.06464 1.72758 1.21559 0.91443 0.84211 1.02918 1.22615 0.94947 0.97272 0.94559 1.62122 1.03378 1.02626 1.55802 1.21984 0.87688 0.98937 1.00413 1.19810 0.80775 0.87001 0.80764 1.90658 1.60173 1.48626 1.42055 1.49239 1.06287 1.24862 1.53800 1.23345 0.91031 0.95677 0.94340 1.23140 0.92101 0.91997 0.89681 0.87763 1.24215 0.98633 0.99047 0.97273 1.24360 0.90770 0.88613 0.96303 0.86793 1.22138 0.87882 0.94979 0.90348 1.45531 1.28665 1.59293 0.98675 1.19011 1.01588 1.23771 0.91675 0.90084 1.24825 0.98588 1.00780 0.95926 1.69919 1.35137 1.48993 1.02173 0.86140 0.83008 0.78381 0.78436 1.21665 1.21622 1.20583 1.22307 0.90638 0.93609 1.02465 1.20015 0.90155 0.82951 0.75594 1.90721 1.66884 1.34662 1.50868 0.92506 0.90446 0.91226 0.90264 0.90165 0.87158 0.94151 0.91865 0.87298 0.92945 0.91015 0.91645 0.89811 0.93241 0.92719 0.93536 0.90948 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.30 59.85 0.62 1.31 16 2 N -0.61 -6.61 3.23 -182.47 -0.59 -7.20 16 3 C 0.12 1.14 6.62 -4.32 -0.03 1.12 16 4 C 0.03 0.36 5.21 -3.68 -0.02 0.34 16 5 N -0.51 -6.31 4.43 -237.57 -1.05 -7.36 16 6 C 0.04 0.50 4.71 -4.97 -0.02 0.48 16 7 C 0.53 8.60 7.36 -10.98 -0.08 8.52 16 8 O -0.54 -10.25 15.11 5.56 0.08 -10.16 16 9 N -0.61 -10.13 2.95 -156.57 -0.46 -10.59 16 10 C 0.08 1.25 6.00 -1.68 -0.01 1.24 16 11 C 0.14 2.42 5.47 -62.55 -0.34 2.07 16 12 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 13 C -0.15 -2.37 6.84 -22.10 -0.15 -2.53 16 14 C 0.10 1.84 5.25 -62.36 -0.33 1.51 16 15 H 0.11 1.99 8.06 -51.93 -0.42 1.57 16 16 C 0.17 3.93 4.83 -0.90 0.00 3.93 16 17 N -0.60 -13.76 3.07 -155.22 -0.48 -14.24 16 18 C -0.23 -6.01 10.37 -15.06 -0.16 -6.16 16 19 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 20 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 21 N -0.92 -26.22 10.74 55.49 0.60 -25.63 16 22 Si 0.91 21.28 29.56 -169.99 -5.02 16.25 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.04 0.45 5.56 -5.20 -0.03 0.42 16 27 C 0.52 6.81 7.56 -11.67 -0.09 6.72 16 28 O -0.55 -8.85 16.33 5.56 0.09 -8.76 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.75 7.26 -51.93 -0.38 0.37 16 31 H 0.07 0.42 7.92 -51.93 -0.41 0.00 16 32 H 0.08 0.53 7.98 -51.93 -0.41 0.12 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 1.32 6.03 -51.93 -0.31 1.01 16 35 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 36 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 37 H 0.11 1.31 8.09 -51.93 -0.42 0.89 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.05 1.32 7.75 -51.93 -0.40 0.92 16 43 H 0.05 1.39 7.52 -51.93 -0.39 1.00 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 46 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -33.27 364.51 -9.42 -42.68 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.34 Total: 0.74 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: -0.74 Total: 18.76 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -1.98 Total: -65.00 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.17 Total: -18.92 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.27 -9.42 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032485935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.439 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds