Wall clock time and date at job start Fri Apr 10 2020 18:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46015 * 118.53783 * 2 1 4 4 C 1.52978 * 110.04133 * 161.81598 * 3 2 1 5 5 N 1.47187 * 108.73230 * 50.29144 * 4 3 2 6 6 C 1.46900 * 110.99878 * 167.63403 * 5 4 3 7 7 C 1.50703 * 109.47064 * 293.76520 * 6 5 4 8 8 O 1.21278 * 120.00075 * 354.03760 * 7 6 5 9 9 N 1.34780 * 120.00142 * 174.03313 * 7 6 5 10 10 C 1.47864 * 126.94144 * 0.02702 * 9 7 6 11 11 C 1.56019 * 105.10447 * 181.97927 * 10 9 7 12 12 H 1.09002 * 116.24748 * 158.83695 * 11 10 9 13 13 C 1.57081 * 99.60560 * 32.80585 * 11 10 9 14 14 C 1.49280 * 126.94543 * 179.71369 * 9 7 6 15 15 H 1.09002 * 116.15627 * 16.72549 * 14 9 7 16 16 C 1.56019 * 104.09343 * 246.71857 * 14 9 7 17 17 N 1.49247 * 105.36775 * 288.93962 * 16 14 9 18 18 C 1.36941 * 127.75354 * 182.18335 * 17 16 14 19 19 H 1.08001 * 119.99867 * 183.50235 * 18 17 16 20 20 C 1.38809 * 119.99817 * 3.50776 * 18 17 16 21 21 N 1.31616 * 119.99875 * 352.55122 * 20 18 17 22 22 Si 1.86801 * 120.00111 * 172.55521 * 20 18 17 23 23 H 1.48491 * 109.47307 * 94.91129 * 22 20 18 24 24 H 1.48497 * 109.47156 * 214.91543 * 22 20 18 25 25 H 1.48500 * 109.46938 * 334.91429 * 22 20 18 26 26 C 1.46880 * 110.18546 * 291.01232 * 5 4 3 27 27 C 1.33719 * 118.53857 * 179.97438 * 2 1 3 28 28 O 1.21281 * 118.62294 * 1.70825 * 27 2 1 29 29 H 1.09002 * 109.47023 * 90.00564 * 1 2 3 30 30 H 1.09005 * 109.47030 * 210.00409 * 1 2 3 31 31 H 1.08998 * 109.47367 * 330.00442 * 1 2 3 32 32 H 1.08998 * 109.37244 * 41.64128 * 3 2 1 33 33 H 1.09003 * 109.27770 * 281.93160 * 3 2 1 34 34 H 1.09005 * 109.58926 * 170.06653 * 4 3 2 35 35 H 1.09000 * 109.59373 * 290.51423 * 4 3 2 36 36 H 1.08992 * 109.47298 * 53.76607 * 6 5 4 37 37 H 1.09000 * 109.46935 * 173.77280 * 6 5 4 38 38 H 1.09003 * 110.31888 * 300.88893 * 10 9 7 39 39 H 1.09003 * 110.31968 * 63.07228 * 10 9 7 40 40 H 1.09001 * 112.36860 * 64.27321 * 13 11 10 41 41 H 1.09000 * 112.36912 * 191.62970 * 13 11 10 42 42 H 1.09004 * 110.31505 * 47.67249 * 16 14 9 43 43 H 1.09001 * 110.32039 * 169.85830 * 16 14 9 44 44 H 0.97001 * 119.99831 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.37583 * 290.11737 * 26 5 4 46 46 H 1.09007 * 109.39330 * 170.43434 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1626 1.2827 0.0000 4 6 3.6125 1.0910 0.4485 5 7 4.2095 -0.0016 -0.3365 6 6 5.6677 -0.0388 -0.1627 7 6 6.2769 1.2024 -0.7622 8 8 5.5816 1.9829 -1.3772 9 7 7.5944 1.4453 -0.6148 10 6 8.5787 0.6041 0.0994 11 6 9.9273 1.3821 -0.0010 12 1 10.6852 1.1309 0.7410 13 6 9.3825 2.8552 0.0241 14 6 8.3561 2.6145 -1.1451 15 1 7.7621 3.4735 -1.4570 16 6 9.3123 1.9935 -2.2102 17 7 10.3296 1.2289 -1.4305 18 6 11.4100 0.5388 -1.9120 19 1 12.0385 -0.0210 -1.2352 20 6 11.6973 0.5588 -3.2699 21 7 10.8540 1.1162 -4.1128 22 14 13.2808 -0.2054 -3.9009 23 1 13.0179 -1.6005 -4.3363 24 1 13.7877 0.5850 -5.0513 25 1 14.2955 -0.2080 -2.8167 26 6 3.6018 -1.2853 0.0378 27 6 2.1038 -1.1747 0.0005 28 8 1.4466 -2.1935 -0.0308 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6602 1.9675 0.6832 33 1 2.1476 1.7005 -1.0067 34 1 4.1721 2.0110 0.2791 35 1 3.6367 0.8356 1.5079 36 1 5.9060 -0.0836 0.8999 37 1 6.0709 -0.9193 -0.6629 38 1 8.2876 0.4843 1.1430 39 1 8.6663 -0.3691 -0.3838 40 1 8.8923 3.1002 0.9663 41 1 10.1481 3.5851 -0.2391 42 1 8.7612 1.3200 -2.8667 43 1 9.7934 2.7802 -2.7914 44 1 11.0550 1.1305 -5.0616 45 1 3.9196 -1.5560 1.0447 46 1 3.9252 -2.0564 -0.6615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032485935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:10 Heat of formation + Delta-G solvation = -5.602352 kcal Electronic energy + Delta-G solvation = -28163.096185 eV Core-core repulsion = 24282.344317 eV Total energy + Delta-G solvation = -3880.751868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76694 -41.30183 -39.57049 -37.90028 -36.30769 -35.37356 -33.33631 -31.35475 -30.90670 -30.21778 -30.05004 -27.44121 -26.93677 -25.67815 -25.03972 -23.88098 -21.93354 -21.36065 -19.96608 -19.71696 -18.85751 -18.21562 -17.80572 -17.59116 -17.29156 -17.08485 -16.55032 -16.23046 -15.79193 -15.72918 -15.47327 -15.12653 -14.82628 -14.49188 -14.32028 -14.01115 -13.78160 -13.52204 -13.38997 -13.31343 -13.06156 -13.01341 -12.97310 -12.79738 -12.68237 -12.53546 -12.33113 -12.20846 -12.06761 -12.03562 -11.82891 -11.49875 -11.14706 -10.82523 -10.61580 -9.80894 -9.53286 -9.43605 -8.87995 -7.84821 -5.17546 1.43914 1.47787 1.48750 1.57847 1.69470 1.90736 1.97337 2.49778 2.73680 3.34842 3.36794 3.44133 3.57720 3.77780 3.83209 3.94912 4.06442 4.07603 4.16179 4.25151 4.26412 4.32573 4.40270 4.46619 4.55185 4.59349 4.65293 4.73378 4.75572 4.88162 4.88586 4.95427 4.98812 5.07096 5.18347 5.29303 5.30962 5.47515 5.51303 5.65717 5.68969 5.79357 6.10392 6.29708 6.74662 6.99728 7.02422 7.26847 7.72156 8.44960 9.27916 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.002824 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.371989 B = 9912.379549 C =10372.543265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.605 5.605 3 C 0.122 3.878 4 C 0.036 3.964 5 N -0.537 5.537 6 C 0.051 3.949 7 C 0.524 3.476 8 O -0.572 6.572 9 N -0.611 5.611 10 C 0.090 3.910 11 C 0.131 3.869 12 H 0.132 0.868 13 C -0.128 4.128 14 C 0.106 3.894 15 H 0.115 0.885 16 C 0.183 3.817 17 N -0.619 5.619 18 C -0.226 4.226 19 H 0.096 0.904 20 C -0.072 4.072 21 N -0.956 5.956 22 Si 0.973 3.027 23 H -0.293 1.293 24 H -0.302 1.302 25 H -0.261 1.261 26 C 0.047 3.953 27 C 0.516 3.484 28 O -0.593 6.593 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.076 0.924 42 H -0.003 1.003 43 H 0.014 0.986 44 H 0.243 0.757 45 H 0.098 0.902 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.876 1.681 16.977 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.337 5.337 3 C 0.000 4.000 4 C -0.092 4.092 5 N -0.263 5.263 6 C -0.079 4.079 7 C 0.313 3.687 8 O -0.451 6.451 9 N -0.345 5.345 10 C -0.034 4.034 11 C 0.025 3.975 12 H 0.149 0.851 13 C -0.168 4.168 14 C 0.003 3.997 15 H 0.133 0.867 16 C 0.057 3.943 17 N -0.343 5.343 18 C -0.355 4.355 19 H 0.114 0.886 20 C -0.264 4.264 21 N -0.605 5.605 22 Si 0.802 3.198 23 H -0.220 1.220 24 H -0.230 1.230 25 H -0.186 1.186 26 C -0.083 4.083 27 C 0.305 3.695 28 O -0.475 6.475 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.015 0.985 43 H 0.032 0.968 44 H 0.052 0.948 45 H 0.116 0.884 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.639 1.573 15.922 21.687 hybrid contribution 1.062 -0.573 -0.843 1.472 sum -13.577 1.000 15.079 20.316 Atomic orbital electron populations 1.21826 0.78267 1.04056 1.02389 1.47534 1.08316 1.06443 1.71392 1.21662 0.91419 0.83896 1.03022 1.22606 0.94921 0.96044 0.95581 1.62047 1.03457 1.03571 1.57255 1.21907 0.87605 0.96358 1.02035 1.20551 0.80331 0.87714 0.80074 1.90643 1.60938 1.50074 1.43484 1.49306 1.06762 1.24566 1.53841 1.23233 0.89509 0.93867 0.96764 1.23586 0.93592 0.93503 0.86826 0.85051 1.24106 0.97373 0.97662 0.97611 1.24125 0.90815 0.89019 0.95738 0.86681 1.21761 0.88331 0.92933 0.91240 1.45786 1.28042 1.58848 1.01672 1.19505 1.01752 1.22394 0.91802 0.88601 1.25633 1.01543 1.02588 0.96672 1.70158 1.37017 1.51702 1.01642 0.85140 0.80064 0.76868 0.77745 1.22045 1.22965 1.18552 1.22243 0.89357 0.92958 1.03778 1.20377 0.90906 0.83006 0.75235 1.90700 1.67763 1.36008 1.53008 0.92776 0.91620 0.87901 0.86822 0.91698 0.88581 0.91863 0.88294 0.87159 0.87617 0.92921 0.87508 0.90509 0.98514 0.96783 0.94811 0.88417 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.30 127.77 1.32 2.53 16 2 N -0.61 -12.14 3.23 -850.20 -2.74 -14.88 16 3 C 0.12 2.02 6.62 86.46 0.57 2.59 16 4 C 0.04 0.66 5.21 86.24 0.45 1.11 16 5 N -0.54 -12.06 4.43 -905.54 -4.01 -16.07 16 6 C 0.05 1.12 4.71 85.56 0.40 1.52 16 7 C 0.52 16.21 7.36 87.66 0.64 16.86 16 8 O -0.57 -21.63 15.11 -3.02 -0.05 -21.67 16 9 N -0.61 -19.21 2.95 -767.65 -2.26 -21.47 16 10 C 0.09 2.46 6.00 87.16 0.52 2.98 16 11 C 0.13 4.13 5.47 46.93 0.26 4.39 16 12 H 0.13 3.45 8.14 -2.39 -0.02 3.44 16 13 C -0.13 -3.61 6.84 33.59 0.23 -3.38 16 14 C 0.11 3.78 5.25 47.06 0.25 4.02 16 15 H 0.12 4.04 8.06 -2.39 -0.02 4.02 16 16 C 0.18 8.79 4.83 86.89 0.42 9.21 16 17 N -0.62 -28.47 3.07 -644.99 -1.98 -30.45 16 18 C -0.23 -11.65 10.37 84.03 0.87 -10.77 16 19 H 0.10 4.55 7.84 -2.91 -0.02 4.53 16 20 C -0.07 -3.97 5.48 84.86 0.47 -3.50 16 21 N -0.96 -57.79 10.74 21.65 0.23 -57.56 16 22 Si 0.97 44.69 29.56 68.60 2.03 46.71 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 26 C 0.05 0.94 5.56 85.42 0.48 1.42 16 27 C 0.52 12.77 7.56 87.68 0.66 13.44 16 28 O -0.59 -18.85 16.33 -3.03 -0.05 -18.90 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.22 7.26 -2.38 -0.02 1.20 16 31 H 0.10 0.92 7.92 -2.39 -0.02 0.90 16 32 H 0.11 1.11 7.98 -2.39 -0.02 1.09 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 2.09 6.03 -2.38 -0.01 2.07 16 35 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 36 H 0.10 1.48 8.12 -2.39 -0.02 1.46 16 37 H 0.11 2.42 8.09 -2.39 -0.02 2.40 16 38 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.00 -0.20 7.75 -2.38 -0.02 -0.21 16 43 H 0.01 0.77 7.52 -2.39 -0.02 0.75 16 44 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 45 H 0.10 1.47 8.12 -2.39 -0.02 1.45 16 46 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -78.11 364.51 -0.32 -78.44 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.97 Total: 13.45 kcal Atomic # 6 Polarization: 34.87 SS G_CDS: 7.54 Total: 42.41 kcal Atomic # 7 Polarization: -129.67 SS G_CDS: -10.76 Total: -140.43 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.10 Total: -40.58 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -78.11 -0.32 -78.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032485935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.834 kcal (2) G-P(sol) polarization free energy of solvation -78.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds