Wall clock time and date at job start Fri Apr 10 2020 18:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42895 * 109.47287 * 2 1 4 4 C 1.36003 * 117.00111 * 180.02562 * 3 2 1 5 5 C 1.39688 * 125.67204 * 180.28780 * 4 3 2 6 6 C 1.37979 * 107.63804 * 180.13884 * 5 4 3 7 7 C 1.47175 * 126.43460 * 179.90039 * 6 5 4 8 8 O 1.21630 * 120.00144 * 9.23721 * 7 6 5 9 9 N 1.34778 * 119.99952 * 189.23141 * 7 6 5 10 10 C 1.46509 * 119.99950 * 358.90029 * 9 7 6 11 11 C 1.52994 * 109.47003 * 277.23088 * 10 9 7 12 12 C 1.46500 * 120.00329 * 178.89614 * 9 7 6 13 13 H 1.08995 * 110.91709 * 182.45305 * 12 9 7 14 14 C 1.55157 * 111.00138 * 306.35631 * 12 9 7 15 15 C 1.54323 * 102.94229 * 153.57345 * 14 12 9 16 16 N 1.47026 * 107.26920 * 337.80423 * 15 14 12 17 17 C 1.36932 * 125.64698 * 178.90501 * 16 15 14 18 18 H 1.08000 * 120.00265 * 180.02562 * 17 16 15 19 19 C 1.38816 * 120.00187 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00056 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99910 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47243 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47149 * 120.00537 * 21 19 17 24 24 H 1.48501 * 109.46822 * 240.00093 * 21 19 17 25 25 C 1.47422 * 108.70539 * 358.94149 * 16 15 14 26 26 N 1.36668 * 107.13029 * 359.63979 * 6 5 4 27 27 H 0.96999 * 126.10085 * 180.22109 * 26 6 5 28 28 N 1.31217 * 125.66997 * 0.02562 * 4 3 2 29 29 H 1.08997 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46642 * 300.00202 * 1 2 3 31 31 H 1.08998 * 109.46520 * 60.00129 * 1 2 3 32 32 H 1.09001 * 109.46972 * 239.99529 * 2 1 3 33 33 H 1.08998 * 109.46520 * 119.99871 * 2 1 3 34 34 H 1.08005 * 126.18271 * 0.02562 * 5 4 3 35 35 H 1.09002 * 109.46720 * 37.23253 * 10 9 7 36 36 H 1.08997 * 109.46912 * 157.22750 * 10 9 7 37 37 H 1.09005 * 109.47276 * 59.99891 * 11 10 9 38 38 H 1.09002 * 109.47024 * 179.97438 * 11 10 9 39 39 H 1.08993 * 109.47034 * 300.00034 * 11 10 9 40 40 H 1.08997 * 110.72374 * 35.20626 * 14 12 9 41 41 H 1.09006 * 110.71941 * 271.93334 * 14 12 9 42 42 H 1.09000 * 109.88609 * 218.38691 * 15 14 12 43 43 H 1.08999 * 109.88481 * 97.22122 * 15 14 12 44 44 H 0.97000 * 119.99903 * 179.97438 * 20 19 17 45 45 H 1.09004 * 110.36906 * 142.96423 * 25 16 15 46 46 H 1.08999 * 110.36905 * 265.18461 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3548 1.5254 -0.0005 5 6 4.0137 2.7571 0.0051 6 6 5.3703 2.5055 -0.0009 7 6 6.4456 3.5104 -0.0001 8 8 6.1807 4.6845 0.1753 9 7 7.7239 3.1296 -0.1936 10 6 8.0458 1.7126 -0.3807 11 6 8.1519 1.0292 0.9840 12 6 8.7915 4.1325 -0.2170 13 1 9.7560 3.6695 -0.4255 14 6 8.4792 5.2534 -1.2434 15 6 9.2486 6.4652 -0.6767 16 7 9.4566 6.2182 0.7577 17 6 10.1199 7.0474 1.6222 18 1 10.2198 6.7747 2.6625 19 6 10.6640 8.2386 1.1617 20 7 10.5419 8.5712 -0.1058 21 14 11.5694 9.3694 2.3411 22 1 11.5681 8.7708 3.7001 23 1 12.9699 9.5465 1.8801 24 1 10.8905 10.6895 2.3804 25 6 8.8336 4.9296 1.1107 26 7 5.5280 1.1480 -0.0017 27 1 6.3724 0.6707 -0.0024 28 7 4.2530 0.5688 -0.0015 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5457 3.7305 0.0110 35 1 7.2595 1.2356 -0.9658 36 1 8.9960 1.6223 -0.9071 37 1 7.2017 1.1196 1.5105 38 1 8.3910 -0.0251 0.8448 39 1 8.9381 1.5063 1.5691 40 1 7.4091 5.4577 -1.2777 41 1 8.8538 4.9866 -2.2317 42 1 8.6630 7.3740 -0.8153 43 1 10.2108 6.5615 -1.1796 44 1 10.9217 9.4038 -0.4275 45 1 9.4399 4.4048 1.8492 46 1 7.8249 5.0877 1.4923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033869264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:29 Heat of formation + Delta-G solvation = 70.010520 kcal Electronic energy + Delta-G solvation = -27911.036958 eV Core-core repulsion = 24033.563910 eV Total energy + Delta-G solvation = -3877.473048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.80369 -39.95197 -38.44842 -36.87067 -36.01658 -32.77327 -32.12203 -30.98103 -30.59315 -29.91136 -28.95308 -27.25104 -24.89605 -24.18491 -23.77843 -22.46280 -21.70408 -20.68172 -20.07916 -19.77503 -17.77169 -17.46255 -16.86128 -16.58294 -16.24632 -15.59435 -15.28255 -14.78776 -14.56196 -14.36911 -14.25342 -14.01858 -13.73525 -13.40534 -13.34545 -12.94080 -12.89814 -12.82512 -12.37700 -12.22925 -12.08364 -11.96053 -11.78759 -11.59767 -11.13111 -11.04540 -10.88393 -10.85954 -10.75284 -10.42655 -10.05405 -9.95187 -9.64740 -9.38853 -9.25815 -8.85480 -8.63676 -8.46996 -6.75007 -5.65547 -2.98574 0.97869 2.25278 2.40231 2.63848 3.14540 3.18372 3.43440 3.48840 3.51395 4.17112 4.39291 4.47796 4.55299 4.66242 4.67816 4.73386 4.89387 5.00437 5.14441 5.21735 5.28364 5.32336 5.40617 5.44457 5.48808 5.56401 5.60172 5.69516 5.74566 5.81634 5.83806 5.97374 6.09326 6.44703 6.54483 6.56273 6.70039 6.74145 7.06009 7.08380 7.29119 7.38993 7.61780 7.72052 7.88901 8.09766 8.31520 9.27531 9.87695 10.53906 11.46186 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024800 B = 0.002688 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.744436 B =10414.241249 C =10875.414216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.288 6.288 4 C 0.262 3.738 5 C -0.196 4.196 6 C 0.067 3.933 7 C 0.577 3.423 8 O -0.484 6.484 9 N -0.596 5.596 10 C 0.082 3.918 11 C -0.198 4.198 12 C 0.131 3.869 13 H 0.097 0.903 14 C -0.159 4.159 15 C 0.185 3.815 16 N -0.601 5.601 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.129 3.871 26 N -0.458 5.458 27 H 0.449 0.551 28 N -0.330 5.330 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.167 0.833 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.251 0.749 45 H 0.034 0.966 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.345 -21.577 -2.639 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 O -0.193 6.193 4 C 0.059 3.941 5 C -0.227 4.227 6 C -0.063 4.063 7 C 0.361 3.639 8 O -0.355 6.355 9 N -0.329 5.329 10 C -0.042 4.042 11 C -0.257 4.257 12 C 0.028 3.972 13 H 0.115 0.885 14 C -0.198 4.198 15 C 0.060 3.940 16 N -0.328 5.328 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.743 3.257 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.002 3.998 26 N -0.187 5.187 27 H 0.307 0.693 28 N -0.172 5.172 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.185 0.815 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.474 -21.728 -2.545 25.183 hybrid contribution 0.850 0.826 0.552 1.308 sum -11.623 -20.902 -1.993 23.999 Atomic orbital electron populations 1.21798 0.92670 1.02898 1.03602 1.22717 0.95457 0.81268 1.02181 1.86321 1.13905 1.29610 1.89467 1.20224 0.84316 0.91958 0.97636 1.21095 0.89707 0.98322 1.13552 1.21454 0.95542 0.84472 1.04838 1.17078 0.81230 0.87090 0.78478 1.90931 1.81951 1.16294 1.46324 1.47916 1.06547 1.07208 1.71248 1.22003 1.03080 0.81586 0.97530 1.22582 1.04011 1.01377 0.97704 1.22561 0.87741 0.87682 0.99215 0.88505 1.23326 1.02866 0.96788 0.96773 1.21069 0.97032 0.92365 0.83560 1.44329 1.64145 1.18435 1.05910 1.19084 1.26598 0.98817 0.90728 0.90468 1.24803 1.01283 0.98080 0.96428 1.69976 1.49982 1.24148 1.12836 0.86038 0.79091 0.80803 0.79799 1.20560 1.21842 1.21755 1.21822 0.97397 0.87603 0.93015 1.47706 1.07101 1.03872 1.60031 0.69270 1.77240 0.88758 1.20709 1.30537 0.90283 0.91441 0.91450 0.91798 0.91793 0.81549 0.90639 0.88173 0.91875 0.90491 0.89968 0.90083 0.92481 0.93746 0.93670 0.93847 0.94809 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.55 16 2 C 0.06 0.51 6.33 37.16 0.24 0.74 16 3 O -0.29 -3.43 10.22 -19.75 -0.20 -3.63 16 4 C 0.26 3.43 7.85 -17.27 -0.14 3.29 16 5 C -0.20 -2.71 10.65 -39.14 -0.42 -3.13 16 6 C 0.07 0.91 6.52 -82.18 -0.54 0.38 16 7 C 0.58 9.10 6.88 -12.63 -0.09 9.01 16 8 O -0.48 -9.65 12.94 5.25 0.07 -9.58 16 9 N -0.60 -8.20 2.58 -165.02 -0.43 -8.62 16 10 C 0.08 0.73 5.67 -4.04 -0.02 0.71 16 11 C -0.20 -1.53 8.88 37.15 0.33 -1.20 16 12 C 0.13 2.24 3.55 -65.78 -0.23 2.01 16 13 H 0.10 1.49 7.78 -51.93 -0.40 1.09 16 14 C -0.16 -3.11 6.28 -24.90 -0.16 -3.27 16 15 C 0.18 4.64 5.37 -3.06 -0.02 4.63 16 16 N -0.60 -15.85 3.39 -170.07 -0.58 -16.42 16 17 C -0.22 -6.40 10.28 -15.06 -0.15 -6.55 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -27.63 10.31 55.49 0.57 -27.06 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C 0.13 2.77 6.62 -2.53 -0.02 2.75 16 26 N -0.46 -5.16 5.52 33.41 0.18 -4.97 16 27 H 0.45 3.89 3.56 -182.64 -0.65 3.24 16 28 N -0.33 -4.09 12.05 30.46 0.37 -3.73 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.17 2.23 8.06 -52.48 -0.42 1.81 16 35 H 0.08 0.59 5.15 -51.93 -0.27 0.32 16 36 H 0.10 0.72 7.80 -51.93 -0.41 0.32 16 37 H 0.06 0.56 6.42 -51.93 -0.33 0.23 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.69 5.74 -51.93 -0.30 1.39 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.04 1.26 7.51 -51.93 -0.39 0.87 16 43 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.04 0.93 6.04 -51.93 -0.31 0.61 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -34.24 363.40 -7.70 -41.95 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.22 Total: 0.65 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.92 Total: 8.43 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.12 Total: -60.81 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.13 Total: -13.21 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.24 -7.70 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033869264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.957 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds