Wall clock time and date at job start Fri Apr 10 2020 18:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37010 * 125.65267 * 2 1 4 4 C 1.35143 * 107.87568 * 180.02562 * 3 2 1 5 5 C 1.46655 * 126.37626 * 180.02562 * 4 3 2 6 6 O 1.21711 * 119.99861 * 179.97438 * 5 4 3 7 7 N 1.34775 * 120.00246 * 359.96854 * 5 4 3 8 8 C 1.46504 * 119.99830 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.36203 * 325.00274 * 8 7 5 10 10 C 1.54840 * 109.35753 * 205.27569 * 8 7 5 11 11 C 1.50118 * 110.81735 * 200.93224 * 10 8 7 12 12 C 1.52525 * 105.41938 * 97.68450 * 11 10 8 13 13 C 1.46234 * 114.27629 * 270.59684 * 12 11 10 14 14 N 1.50165 * 107.53509 * 58.40260 * 13 12 11 15 15 C 1.36946 * 120.53789 * 109.61499 * 14 13 12 16 16 H 1.07993 * 120.00379 * 156.70430 * 15 14 13 17 17 C 1.38808 * 119.99688 * 336.70731 * 15 14 13 18 18 N 1.31629 * 120.00127 * 340.42453 * 17 15 14 19 19 Si 1.86797 * 120.00097 * 160.42784 * 17 15 14 20 20 H 1.48503 * 109.47053 * 59.99755 * 19 17 15 21 21 H 1.48503 * 109.47214 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47024 * 299.99792 * 19 17 15 23 23 C 1.43129 * 118.90255 * 289.66191 * 14 13 12 24 24 N 1.39836 * 107.24785 * 359.97438 * 4 3 2 25 25 C 1.46503 * 126.18653 * 180.26449 * 24 4 3 26 26 C 1.34621 * 125.64599 * 180.02562 * 2 1 3 27 27 O 1.21731 * 125.73205 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47033 * 300.00144 * 1 2 3 30 30 H 1.09004 * 109.47196 * 59.99918 * 1 2 3 31 31 H 1.07995 * 126.06108 * 0.02562 * 3 2 1 32 32 H 0.96996 * 119.99826 * 0.02562 * 7 5 4 33 33 H 1.09005 * 109.21377 * 321.27876 * 10 8 7 34 34 H 1.09006 * 109.20725 * 80.63015 * 10 8 7 35 35 H 1.09007 * 110.24896 * 216.65400 * 11 10 8 36 36 H 1.08993 * 110.24978 * 338.70903 * 11 10 8 37 37 H 1.09003 * 108.51651 * 31.83436 * 12 11 10 38 38 H 1.08994 * 108.52644 * 149.50503 * 12 11 10 39 39 H 1.09004 * 109.84711 * 177.91755 * 13 12 11 40 40 H 1.09002 * 109.84442 * 298.89741 * 13 12 11 41 41 H 0.96997 * 119.99746 * 180.02562 * 18 17 15 42 42 H 1.09004 * 108.12479 * 329.75057 * 23 14 13 43 43 H 1.09001 * 107.99329 * 213.29347 * 23 14 13 44 44 H 1.08997 * 109.46945 * 179.71913 * 25 24 4 45 45 H 1.09004 * 109.46554 * 299.71608 * 25 24 4 46 46 H 1.08998 * 109.47179 * 59.71362 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1133 0.0000 4 6 3.5505 0.7007 -0.0006 5 6 4.7393 1.5595 -0.0003 6 8 5.8498 1.0615 -0.0004 7 7 4.6021 2.9003 0.0001 8 6 5.7897 3.7581 -0.0002 9 1 6.5761 3.2868 0.5892 10 6 5.4324 5.1294 0.6240 11 6 6.4161 6.1811 0.1999 12 6 5.7541 6.9093 -0.9654 13 6 6.0357 6.3263 -2.2766 14 7 5.5650 4.9007 -2.2484 15 6 4.4654 4.5166 -2.9687 16 1 4.3427 3.4831 -3.2571 17 6 3.5085 5.4557 -3.3281 18 7 3.4342 6.6001 -2.6820 19 14 2.3262 5.0955 -4.7287 20 1 1.5342 3.8810 -4.4079 21 1 1.4097 6.2495 -4.9121 22 1 3.0945 4.8694 -5.9793 23 6 6.2839 3.9503 -1.4556 24 7 3.5376 -0.6976 -0.0003 25 6 4.7120 -1.5735 0.0047 26 6 2.2496 -1.0940 -0.0005 27 8 1.8609 -2.2476 -0.0006 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.9248 2.1387 0.0004 32 1 3.7170 3.2972 0.0004 33 1 4.4333 5.4215 0.3003 34 1 5.4463 5.0434 1.7105 35 1 6.6042 6.8743 1.0199 36 1 7.3474 5.7175 -0.1251 37 1 4.6754 6.9045 -0.8087 38 1 6.0979 7.9436 -0.9676 39 1 5.5002 6.8777 -3.0495 40 1 7.1074 6.3583 -2.4733 41 1 2.7653 7.2562 -2.9330 42 1 7.3289 4.2585 -1.4216 43 1 6.2362 2.9856 -1.9608 44 1 4.3888 -2.6144 0.0086 45 1 5.3114 -1.3824 -0.8855 46 1 5.3094 -1.3751 0.8945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034544045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:48 Heat of formation + Delta-G solvation = 16.665229 kcal Electronic energy + Delta-G solvation = -28955.646488 eV Core-core repulsion = 25075.860215 eV Total energy + Delta-G solvation = -3879.786273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.37453 -39.34694 -37.70255 -36.70610 -35.37187 -34.24682 -33.19911 -31.26931 -30.77303 -29.71932 -27.84245 -26.17274 -26.02792 -24.30509 -23.27599 -22.68575 -20.73639 -20.31592 -19.62445 -19.20786 -17.77884 -16.75083 -16.69895 -16.44085 -15.73377 -15.26142 -15.10786 -14.89521 -14.66803 -14.37327 -14.13879 -13.92617 -13.75453 -13.31196 -13.27345 -12.92739 -12.61210 -12.41495 -12.27859 -12.21481 -11.83697 -11.62533 -11.44004 -11.31654 -10.84000 -10.81108 -10.55892 -10.52717 -10.17532 -10.02473 -9.89256 -9.78592 -9.61985 -9.45478 -9.30133 -8.70686 -8.40148 -7.74313 -6.75223 -5.86752 -3.25045 1.48959 2.18525 2.85368 3.07619 3.30670 3.38222 3.42228 3.55894 3.86169 4.43582 4.63932 5.00693 5.07387 5.13285 5.13723 5.26616 5.33409 5.34868 5.42340 5.44544 5.51835 5.60057 5.75649 5.88838 5.94840 6.08123 6.16071 6.20795 6.35319 6.40323 6.46987 6.57745 6.68181 6.79329 6.86610 6.93294 6.98163 7.12297 7.22379 7.23926 7.56920 7.68653 7.93527 7.95130 8.23528 8.36159 8.57429 9.12754 9.80420 10.33463 11.19627 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.004747 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.476725 B = 5896.592544 C = 7245.797826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.524 5.524 3 C 0.052 3.948 4 C -0.026 4.026 5 C 0.587 3.413 6 O -0.550 6.550 7 N -0.687 5.687 8 C 0.119 3.881 9 H 0.075 0.925 10 C -0.110 4.110 11 C -0.112 4.112 12 C -0.130 4.130 13 C 0.164 3.836 14 N -0.582 5.582 15 C -0.241 4.241 16 H 0.064 0.936 17 C 0.004 3.996 18 N -0.899 5.899 19 Si 0.895 3.105 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C 0.151 3.849 24 N -0.511 5.511 25 C 0.109 3.891 26 C 0.648 3.352 27 O -0.575 6.575 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.192 0.808 32 H 0.401 0.599 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.024 0.976 39 H 0.089 0.911 40 H 0.005 0.995 41 H 0.253 0.747 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -4.830 7.971 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.241 5.241 3 C -0.077 4.077 4 C -0.135 4.135 5 C 0.372 3.628 6 O -0.430 6.430 7 N -0.336 5.336 8 C 0.012 3.988 9 H 0.093 0.907 10 C -0.148 4.148 11 C -0.150 4.150 12 C -0.169 4.169 13 C 0.040 3.960 14 N -0.302 5.302 15 C -0.370 4.370 16 H 0.081 0.919 17 C -0.194 4.194 18 N -0.544 5.544 19 Si 0.725 3.275 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.213 1.213 23 C 0.020 3.980 24 N -0.230 5.230 25 C -0.032 4.032 26 C 0.350 3.650 27 O -0.454 6.454 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.209 0.791 32 H 0.236 0.764 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.043 0.957 39 H 0.107 0.893 40 H 0.023 0.977 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.259 -5.913 7.900 9.947 hybrid contribution -1.263 0.213 -0.732 1.475 sum -2.522 -5.700 7.167 9.498 Atomic orbital electron populations 1.21860 0.74800 1.04970 1.03220 1.44880 1.07900 1.06109 1.65256 1.22110 0.87930 0.93489 1.04181 1.19889 0.94337 0.83866 1.15367 1.16631 0.86487 0.82224 0.77415 1.90787 1.25845 1.74516 1.51860 1.45713 1.11077 1.04253 1.72523 1.22889 0.86139 0.89013 1.00767 0.90718 1.21672 1.01527 0.93975 0.97609 1.20973 0.98262 0.97244 0.98557 1.21001 1.03904 0.96328 0.95632 1.20186 0.93690 0.84988 0.97111 1.44159 1.31119 1.05269 1.49691 1.19109 0.97545 0.94552 1.25832 0.91859 1.24840 0.97288 0.97602 0.99709 1.69954 1.36007 1.08794 1.39677 0.86492 0.80598 0.76939 0.83427 1.21200 1.21804 1.21311 1.20745 0.94121 0.94008 0.89092 1.45144 1.06870 1.05142 1.65893 1.21724 0.84623 0.92942 1.03907 1.16115 0.80908 0.84857 0.83087 1.91005 1.76651 1.16363 1.61411 0.88917 0.90435 0.90274 0.79105 0.76425 0.90110 0.94161 0.93216 0.92382 0.88119 0.95694 0.89297 0.97679 0.93726 0.94422 0.94386 0.89736 0.90355 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 11.16 59.85 0.67 1.51 16 2 N -0.52 -6.89 3.12 -128.78 -0.40 -7.30 16 3 C 0.05 0.66 10.91 -16.34 -0.18 0.48 16 4 C -0.03 -0.40 6.88 -81.91 -0.56 -0.96 16 5 C 0.59 9.84 7.63 -12.86 -0.10 9.74 16 6 O -0.55 -10.53 15.30 5.18 0.08 -10.45 16 7 N -0.69 -11.00 5.07 -53.21 -0.27 -11.27 16 8 C 0.12 2.03 2.92 -65.96 -0.19 1.84 16 9 H 0.07 1.27 7.57 -51.93 -0.39 0.88 16 10 C -0.11 -1.77 5.23 -27.19 -0.14 -1.91 16 11 C -0.11 -1.83 5.76 -28.41 -0.16 -2.00 16 12 C -0.13 -2.50 5.02 -30.19 -0.15 -2.65 16 13 C 0.16 3.51 5.24 -5.21 -0.03 3.48 16 14 N -0.58 -12.88 2.60 -175.31 -0.46 -13.33 16 15 C -0.24 -5.86 9.62 -15.06 -0.14 -6.01 16 16 H 0.06 1.60 7.88 -52.49 -0.41 1.19 16 17 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 18 N -0.90 -22.38 9.43 55.49 0.52 -21.86 16 19 Si 0.89 20.14 29.60 -169.99 -5.03 15.11 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.15 2.98 4.76 -4.82 -0.02 2.96 16 24 N -0.51 -8.00 3.21 -124.82 -0.40 -8.40 16 25 C 0.11 1.49 9.95 59.85 0.60 2.08 16 26 C 0.65 10.53 8.49 -87.07 -0.74 9.79 16 27 O -0.58 -10.78 17.11 5.16 0.09 -10.69 16 28 H 0.09 0.88 7.68 -51.93 -0.40 0.48 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.19 1.86 7.37 -52.49 -0.39 1.47 16 32 H 0.40 5.96 7.29 -40.82 -0.30 5.66 16 33 H 0.08 1.48 6.59 -51.93 -0.34 1.14 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.06 0.94 6.28 -51.93 -0.33 0.62 16 37 H 0.10 2.21 5.29 -51.93 -0.27 1.93 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 2.16 6.05 -51.93 -0.31 1.84 16 40 H 0.01 0.10 8.12 -51.93 -0.42 -0.32 16 41 H 0.25 6.29 8.31 -40.82 -0.34 5.95 16 42 H 0.04 0.71 6.88 -51.93 -0.36 0.36 16 43 H 0.04 0.83 7.83 -51.93 -0.41 0.42 16 44 H 0.08 1.06 7.73 -51.93 -0.40 0.65 16 45 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 46 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -30.12 362.99 -8.47 -38.59 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.82 Total: 5.78 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: -1.25 Total: 18.36 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -1.01 Total: -62.17 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.17 Total: -21.14 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.12 -8.47 -38.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034544045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.257 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds