Wall clock time and date at job start Fri Apr 10 2020 18:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37024 * 125.64770 * 2 1 4 4 C 1.35144 * 107.87177 * 180.15663 * 3 2 1 5 5 C 1.46660 * 126.37412 * 179.88456 * 4 3 2 6 6 O 1.21700 * 120.00102 * 179.68467 * 5 4 3 7 7 N 1.34775 * 120.00280 * 359.67468 * 5 4 3 8 8 C 1.46497 * 120.00320 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.26026 * 35.32155 * 8 7 5 10 10 C 1.50878 * 109.36749 * 155.00399 * 8 7 5 11 11 C 1.52570 * 109.35827 * 212.07765 * 10 8 7 12 12 C 1.47092 * 114.32633 * 274.98606 * 11 10 8 13 13 C 1.54868 * 110.32051 * 62.79962 * 12 11 10 14 14 N 1.44580 * 109.60245 * 288.73369 * 13 12 11 15 15 C 1.36929 * 118.64288 * 270.70770 * 14 13 12 16 16 H 1.07994 * 120.00435 * 145.31796 * 15 14 13 17 17 C 1.38817 * 120.00059 * 325.31304 * 15 14 13 18 18 N 1.31618 * 120.00131 * 330.03635 * 17 15 14 19 19 Si 1.86803 * 119.99888 * 150.02805 * 17 15 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.46654 * 60.00914 * 19 17 15 22 22 H 1.48492 * 109.47340 * 300.00529 * 19 17 15 23 23 C 1.47596 * 122.70933 * 90.98220 * 14 13 12 24 24 N 1.39831 * 107.24695 * 359.60994 * 4 3 2 25 25 C 1.46501 * 126.18534 * 180.24565 * 24 4 3 26 26 C 1.34612 * 125.65541 * 179.72062 * 2 1 3 27 27 O 1.21730 * 125.72817 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.46976 * 180.26232 * 1 2 3 29 29 H 1.09001 * 109.47224 * 300.25495 * 1 2 3 30 30 H 1.08995 * 109.47232 * 60.25621 * 1 2 3 31 31 H 1.07997 * 126.06026 * 0.02562 * 3 2 1 32 32 H 0.97003 * 119.99466 * 0.02562 * 7 5 4 33 33 H 1.08995 * 109.49363 * 92.10816 * 10 8 7 34 34 H 1.08997 * 109.49112 * 332.04358 * 10 8 7 35 35 H 1.09000 * 108.51222 * 153.73021 * 11 10 8 36 36 H 1.09006 * 108.39117 * 36.15093 * 11 10 8 37 37 H 1.08991 * 109.32672 * 302.54019 * 12 11 10 38 38 H 1.09002 * 109.18810 * 182.97416 * 12 11 10 39 39 H 1.09001 * 109.44591 * 168.69299 * 13 12 11 40 40 H 1.09006 * 109.42502 * 48.76113 * 13 12 11 41 41 H 0.97003 * 119.99901 * 355.10821 * 18 17 15 42 42 H 1.09007 * 108.94966 * 78.29928 * 23 14 13 43 43 H 1.09000 * 108.94673 * 196.92218 * 23 14 13 44 44 H 1.08995 * 109.47387 * 89.99804 * 25 24 4 45 45 H 1.08998 * 109.47522 * 210.00761 * 25 24 4 46 46 H 1.09002 * 109.46715 * 330.00116 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1135 0.0000 4 6 3.5505 0.7009 -0.0035 5 6 4.7393 1.5598 -0.0072 6 8 5.8498 1.0620 -0.0044 7 7 4.6019 2.9005 -0.0138 8 6 5.7894 3.7585 -0.0181 9 1 6.5725 3.2857 -0.6106 10 6 5.4394 5.0942 -0.6262 11 6 6.6586 5.6543 -1.3525 12 6 7.5912 6.3946 -0.4888 13 6 8.1854 5.4559 0.5902 14 7 7.1661 5.1267 1.5613 15 6 7.0106 5.9408 2.6512 16 1 6.0271 6.1066 3.0654 17 6 8.1170 6.5530 3.2238 18 7 9.2951 5.9689 3.1673 19 14 7.9340 8.2061 4.0744 20 1 9.2534 8.6421 4.5981 21 1 6.9718 8.0804 5.1985 22 1 7.4314 9.2099 3.1025 23 6 6.2904 3.9460 1.4292 24 7 3.5376 -0.6973 0.0034 25 6 4.7120 -1.5731 0.0077 26 6 2.2497 -1.0938 0.0053 27 8 1.8611 -2.2473 0.0114 28 1 -0.3633 -1.0277 0.0047 29 1 -0.3634 0.5178 0.8877 30 1 -0.3633 0.5098 -0.8922 31 1 1.9246 2.1389 0.0004 32 1 3.7168 3.2974 -0.0159 33 1 5.1364 5.7842 0.1613 34 1 4.6205 4.9681 -1.3343 35 1 6.3145 6.3218 -2.1425 36 1 7.1965 4.8248 -1.8117 37 1 7.0603 7.2128 -0.0024 38 1 8.3987 6.8004 -1.0984 39 1 9.0147 5.9566 1.0899 40 1 8.5450 4.5419 0.1173 41 1 9.3779 5.0795 2.7890 42 1 6.8450 3.0581 1.7332 43 1 5.4310 4.0673 2.0886 44 1 5.0034 -1.7853 1.0363 45 1 4.4714 -2.5063 -0.5017 46 1 5.5353 -1.0794 -0.5086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034544054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:52 Heat of formation + Delta-G solvation = 8.791707 kcal Electronic energy + Delta-G solvation = -28131.885645 eV Core-core repulsion = 24251.757950 eV Total energy + Delta-G solvation = -3880.127694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.66003 -39.73894 -37.87376 -36.95997 -35.65163 -34.80142 -33.56289 -31.49982 -30.72763 -29.84710 -28.05738 -26.34564 -25.88645 -24.55892 -23.76949 -22.65541 -20.95684 -20.65143 -20.05405 -19.28116 -18.08606 -17.24806 -17.00115 -16.76381 -16.10140 -15.57300 -15.27504 -15.14561 -14.72866 -14.49287 -14.30966 -14.06100 -13.78315 -13.69275 -13.47724 -13.13417 -13.04449 -12.87915 -12.55230 -12.39951 -12.31857 -11.83103 -11.71243 -11.22624 -10.79708 -10.77422 -10.68552 -10.48468 -10.22813 -10.16465 -10.05221 -10.02875 -9.95086 -9.85435 -9.34905 -9.00681 -8.31052 -8.03043 -6.79506 -6.05995 -3.33770 1.14178 1.91733 2.60939 2.72268 3.19237 3.44949 3.48029 3.51200 3.69035 4.35233 4.57225 4.65517 4.74888 4.82758 4.86912 5.02867 5.09525 5.18031 5.23812 5.31254 5.32689 5.48825 5.51463 5.58522 5.74151 5.79222 5.82641 5.98407 6.07534 6.25094 6.28808 6.39570 6.41081 6.50357 6.62719 6.68539 6.74002 6.79153 6.86366 6.96184 7.14785 7.37316 7.50729 7.98112 8.07640 8.18356 8.58941 9.16478 9.84055 10.24113 11.13153 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019586 B = 0.002944 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.239913 B = 9509.841646 C = 9623.568901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.525 5.525 3 C 0.048 3.952 4 C -0.026 4.026 5 C 0.588 3.412 6 O -0.531 6.531 7 N -0.708 5.708 8 C 0.134 3.866 9 H 0.083 0.917 10 C -0.114 4.114 11 C -0.098 4.098 12 C -0.143 4.143 13 C 0.142 3.858 14 N -0.586 5.586 15 C -0.360 4.360 16 H 0.050 0.950 17 C -0.017 4.017 18 N -0.898 5.898 19 Si 1.059 2.941 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.292 1.292 23 C 0.142 3.858 24 N -0.509 5.509 25 C 0.099 3.901 26 C 0.648 3.352 27 O -0.569 6.569 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.191 0.809 32 H 0.397 0.603 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.270 0.730 42 H 0.019 0.981 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.729 -6.330 -9.898 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.242 5.242 3 C -0.081 4.081 4 C -0.136 4.136 5 C 0.373 3.627 6 O -0.408 6.408 7 N -0.359 5.359 8 C 0.029 3.971 9 H 0.101 0.899 10 C -0.152 4.152 11 C -0.136 4.136 12 C -0.183 4.183 13 C 0.015 3.985 14 N -0.309 5.309 15 C -0.489 4.489 16 H 0.068 0.932 17 C -0.221 4.221 18 N -0.537 5.537 19 Si 0.888 3.112 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.220 1.220 23 C 0.015 3.985 24 N -0.229 5.229 25 C -0.042 4.042 26 C 0.350 3.650 27 O -0.447 6.447 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.208 0.792 32 H 0.231 0.769 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.346 -6.412 -9.117 18.167 hybrid contribution -1.451 -0.973 -0.701 1.882 sum -15.797 -7.385 -9.818 20.012 Atomic orbital electron populations 1.21875 0.74628 1.05237 1.03137 1.44912 1.07954 1.06061 1.65249 1.22015 0.87850 0.93465 1.04819 1.19825 0.94110 0.84185 1.15441 1.16721 0.86721 0.82118 0.77115 1.90836 1.25901 1.74088 1.49989 1.45904 1.10554 1.04804 1.74618 1.21618 0.86029 0.89549 0.99874 0.89933 1.21259 0.97936 0.96120 0.99867 1.20259 0.96044 0.99435 0.97900 1.21376 0.98303 1.00351 0.98274 1.20946 0.93154 0.95241 0.89192 1.43559 1.39205 1.25516 1.22571 1.19847 0.94141 1.25814 1.09067 0.93241 1.25827 0.93417 1.04782 0.98098 1.70771 1.26120 1.15849 1.40946 0.83618 0.75479 0.76192 0.75866 1.21164 1.21994 1.21962 1.21589 0.94527 0.90511 0.91861 1.45208 1.07035 1.04989 1.65647 1.21906 0.85250 0.93364 1.03638 1.16135 0.80868 0.84895 0.83080 1.91030 1.76555 1.16297 1.60821 0.88763 0.90302 0.90359 0.79235 0.76887 0.89966 0.92721 0.93541 0.93337 0.91712 0.93475 0.90295 0.95746 0.91905 0.96261 0.93056 0.91213 0.90087 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 11.16 59.85 0.67 1.21 16 2 N -0.52 -5.18 3.12 -128.78 -0.40 -5.58 16 3 C 0.05 0.41 10.91 -16.33 -0.18 0.24 16 4 C -0.03 -0.32 6.88 -81.91 -0.56 -0.88 16 5 C 0.59 8.28 7.74 -12.86 -0.10 8.18 16 6 O -0.53 -9.44 14.49 5.19 0.08 -9.37 16 7 N -0.71 -8.81 4.96 -55.50 -0.28 -9.08 16 8 C 0.13 2.13 2.27 -68.32 -0.15 1.98 16 9 H 0.08 1.47 6.74 -51.93 -0.35 1.12 16 10 C -0.11 -1.65 5.07 -28.02 -0.14 -1.79 16 11 C -0.10 -1.52 5.16 -29.79 -0.15 -1.67 16 12 C -0.14 -2.67 5.74 -28.58 -0.16 -2.83 16 13 C 0.14 3.18 4.89 -4.08 -0.02 3.16 16 14 N -0.59 -13.83 2.01 -171.87 -0.35 -14.17 16 15 C -0.36 -9.54 9.17 -15.06 -0.14 -9.68 16 16 H 0.05 1.33 7.97 -52.49 -0.42 0.91 16 17 C -0.02 -0.48 4.68 -17.43 -0.08 -0.56 16 18 N -0.90 -26.21 12.18 55.49 0.68 -25.54 16 19 Si 1.06 24.40 30.01 -169.99 -5.10 19.30 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 23 C 0.14 2.90 5.86 -2.76 -0.02 2.89 16 24 N -0.51 -6.81 3.21 -124.83 -0.40 -7.21 16 25 C 0.10 1.20 10.57 59.85 0.63 1.84 16 26 C 0.65 8.92 8.49 -87.08 -0.74 8.18 16 27 O -0.57 -9.50 17.35 5.16 0.09 -9.41 16 28 H 0.09 0.64 7.69 -51.93 -0.40 0.24 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.19 0.79 7.37 -52.49 -0.39 0.40 16 32 H 0.40 3.47 7.39 -40.82 -0.30 3.17 16 33 H 0.08 1.36 7.49 -51.93 -0.39 0.98 16 34 H 0.05 0.63 7.94 -51.93 -0.41 0.22 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.74 7.35 -51.93 -0.38 0.36 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 2.04 5.28 -51.93 -0.27 1.76 16 40 H 0.02 0.53 8.06 -51.93 -0.42 0.11 16 41 H 0.27 8.05 7.39 -40.82 -0.30 7.74 16 42 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.05 1.05 7.86 -51.93 -0.41 0.64 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 46 H 0.10 1.28 6.45 -51.93 -0.33 0.94 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -34.82 367.30 -8.25 -43.07 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.95 Total: 2.19 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -1.15 Total: 10.26 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.75 Total: -61.58 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.16 Total: -18.78 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.10 Total: 19.30 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.82 -8.25 -43.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034544054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.860 kcal (2) G-P(sol) polarization free energy of solvation -34.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds