Wall clock time and date at job start Fri Apr 10 2020 18:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37010 * 125.65335 * 2 1 4 4 C 1.35145 * 107.87762 * 180.02562 * 3 2 1 5 5 C 1.46660 * 126.37538 * 179.97438 * 4 3 2 6 6 O 1.21705 * 119.99710 * 180.02562 * 5 4 3 7 7 N 1.34767 * 120.00112 * 0.02562 * 5 4 3 8 8 C 1.46510 * 119.99962 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.46595 * 324.99669 * 8 7 5 10 10 C 1.52992 * 109.46944 * 84.99807 * 8 7 5 11 11 C 1.53003 * 109.46798 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47226 * 299.99595 * 11 10 8 13 13 H 1.08998 * 109.47474 * 300.00645 * 12 11 10 14 14 N 1.46500 * 109.47487 * 179.97438 * 12 11 10 15 15 C 1.36935 * 119.99795 * 85.00076 * 14 12 11 16 16 H 1.08006 * 119.99956 * 0.02562 * 15 14 12 17 17 C 1.38809 * 120.00104 * 180.02562 * 15 14 12 18 18 N 1.31615 * 120.00002 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00116 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99934 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99927 * 19 17 15 23 23 C 1.53005 * 109.46769 * 60.00255 * 12 11 10 24 24 C 1.53002 * 109.46890 * 204.99884 * 8 7 5 25 25 N 1.39836 * 107.24252 * 0.24363 * 4 3 2 26 26 C 1.46504 * 126.17998 * 179.75730 * 25 4 3 27 27 C 1.34627 * 125.64871 * 180.02562 * 2 1 3 28 28 O 1.21723 * 125.73025 * 359.97088 * 27 2 1 29 29 H 1.09002 * 109.47066 * 89.99944 * 1 2 3 30 30 H 1.08994 * 109.47166 * 209.99246 * 1 2 3 31 31 H 1.08998 * 109.47004 * 329.99539 * 1 2 3 32 32 H 1.08003 * 126.06161 * 0.02562 * 3 2 1 33 33 H 0.96997 * 120.00727 * 0.02562 * 7 5 4 34 34 H 1.08994 * 109.47407 * 299.99933 * 10 8 7 35 35 H 1.09000 * 109.47587 * 60.00470 * 10 8 7 36 36 H 1.09002 * 109.47230 * 180.02562 * 11 10 8 37 37 H 1.08998 * 109.47420 * 60.00273 * 11 10 8 38 38 H 0.96997 * 120.00022 * 265.00550 * 14 12 11 39 39 H 0.97004 * 120.00335 * 0.02562 * 18 17 15 40 40 H 1.09003 * 109.46999 * 59.99538 * 23 12 11 41 41 H 1.08994 * 109.47275 * 180.02562 * 23 12 11 42 42 H 1.09006 * 109.47104 * 60.00388 * 24 8 7 43 43 H 1.08995 * 109.47063 * 299.99736 * 24 8 7 44 44 H 1.09002 * 109.47197 * 90.00007 * 26 25 4 45 45 H 1.08998 * 109.47207 * 210.00401 * 26 25 4 46 46 H 1.08997 * 109.47230 * 330.00423 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1133 0.0000 4 6 3.5506 0.7007 -0.0006 5 6 4.7393 1.5596 -0.0013 6 8 5.8498 1.0616 -0.0023 7 7 4.6020 2.9003 -0.0009 8 6 5.7896 3.7583 -0.0022 9 1 6.5777 3.2886 0.5862 10 6 6.2749 3.9552 -1.4398 11 6 7.5154 4.8507 -1.4410 12 6 7.1645 6.2091 -0.8307 13 1 6.3765 6.6791 -1.4190 14 7 8.3525 7.0664 -0.8313 15 6 8.6695 7.7963 -1.9457 16 1 8.0434 7.7403 -2.8240 17 6 9.7953 8.6082 -1.9465 18 7 10.5585 8.6761 -0.8764 19 14 10.2273 9.6045 -3.4665 20 1 9.2177 9.3536 -4.5263 21 1 11.5699 9.2019 -3.9572 22 1 10.2381 11.0496 -3.1246 23 6 6.6792 6.0121 0.6069 24 6 5.4380 5.1166 0.6080 25 7 3.5376 -0.6976 -0.0066 26 6 4.7120 -1.5734 -0.0143 27 6 2.2496 -1.0940 -0.0005 28 8 1.8610 -2.2475 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5139 32 1 1.9248 2.1388 0.0004 33 1 3.7170 3.2973 0.0002 34 1 6.5253 2.9876 -1.8745 35 1 5.4867 4.4249 -2.0282 36 1 7.8610 4.9914 -2.4652 37 1 8.3035 4.3806 -0.8527 38 1 8.9146 7.1169 -0.0424 39 1 10.3345 8.1584 -0.0872 40 1 7.4672 5.5420 1.1953 41 1 6.4288 6.9797 1.0417 42 1 5.0923 4.9762 1.6322 43 1 4.6499 5.5862 0.0196 44 1 5.0066 -1.7951 1.0115 45 1 4.4695 -2.5017 -0.5314 46 1 5.5336 -1.0749 -0.5286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034798550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:03 Heat of formation + Delta-G solvation = -13.028701 kcal Electronic energy + Delta-G solvation = -27177.186503 eV Core-core repulsion = 23296.112605 eV Total energy + Delta-G solvation = -3881.073898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.81648 -40.02852 -38.11247 -37.11132 -35.79979 -35.04627 -33.44859 -31.30736 -30.52822 -30.33417 -28.56494 -26.96091 -26.42728 -23.97587 -23.27832 -22.43938 -21.53185 -20.86228 -20.63556 -19.64853 -18.32394 -17.25903 -17.15797 -16.91416 -16.40378 -15.77134 -15.38727 -15.26918 -15.03363 -14.67880 -14.42067 -14.04057 -13.97846 -13.81831 -13.63458 -13.51747 -13.26055 -13.03949 -12.66518 -12.55067 -12.23297 -11.93474 -11.88297 -11.41086 -11.20132 -10.92163 -10.86738 -10.73910 -10.46628 -10.32006 -10.23553 -10.12068 -10.00479 -9.98884 -9.22031 -9.10900 -8.87411 -8.18847 -7.02544 -6.09662 -3.09452 0.95343 1.76347 2.47042 2.52244 2.96668 3.25050 3.51403 3.58098 3.67197 4.17731 4.48157 4.52114 4.65765 4.66721 4.76556 4.78700 4.88675 4.92393 5.05966 5.13287 5.17124 5.43941 5.47150 5.48488 5.56646 5.59699 5.63458 5.73432 5.75565 5.90314 5.92182 6.08384 6.11983 6.17122 6.24225 6.34541 6.42939 6.48701 6.61059 6.79999 6.88703 7.04628 7.23593 7.82218 7.82649 7.94345 8.76408 9.23938 10.10233 10.25187 11.38999 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.002183 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.712312 B =12823.438336 C =13043.750195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.524 5.524 3 C 0.051 3.949 4 C -0.031 4.031 5 C 0.590 3.410 6 O -0.531 6.531 7 N -0.713 5.713 8 C 0.148 3.852 9 H 0.091 0.909 10 C -0.124 4.124 11 C -0.132 4.132 12 C 0.182 3.818 13 H 0.047 0.953 14 N -0.737 5.737 15 C -0.329 4.329 16 H 0.065 0.935 17 C -0.047 4.047 18 N -0.946 5.946 19 Si 1.084 2.916 20 H -0.295 1.295 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.122 4.122 24 C -0.118 4.118 25 N -0.509 5.509 26 C 0.099 3.901 27 C 0.648 3.352 28 O -0.566 6.566 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.191 0.809 33 H 0.398 0.602 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.366 0.634 39 H 0.256 0.744 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.709 -15.007 3.809 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.241 5.241 3 C -0.079 4.079 4 C -0.141 4.141 5 C 0.376 3.624 6 O -0.408 6.408 7 N -0.363 5.363 8 C 0.045 3.955 9 H 0.109 0.891 10 C -0.163 4.163 11 C -0.173 4.173 12 C 0.073 3.927 13 H 0.065 0.935 14 N -0.379 5.379 15 C -0.460 4.460 16 H 0.083 0.917 17 C -0.244 4.244 18 N -0.591 5.591 19 Si 0.915 3.085 20 H -0.222 1.222 21 H -0.221 1.221 22 H -0.221 1.221 23 C -0.161 4.161 24 C -0.157 4.157 25 N -0.229 5.229 26 C -0.042 4.042 27 C 0.350 3.650 28 O -0.444 6.444 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.208 0.792 33 H 0.232 0.768 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.199 0.801 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.213 -15.184 2.953 25.453 hybrid contribution -1.423 -0.873 0.808 1.855 sum -21.637 -16.057 3.762 27.205 Atomic orbital electron populations 1.21873 0.74479 1.04701 1.03616 1.44951 1.08012 1.06053 1.65090 1.22042 0.87876 0.93465 1.04497 1.19769 0.94028 0.84253 1.16002 1.16711 0.86770 0.82017 0.76911 1.90844 1.25926 1.74116 1.49938 1.45845 1.10635 1.04856 1.74959 1.21177 0.86596 0.89777 0.97947 0.89111 1.21902 0.99022 1.00227 0.95162 1.22208 0.95782 0.96947 1.02337 1.20179 0.90067 0.89770 0.92728 0.93463 1.42451 1.27821 1.52017 1.15628 1.20091 1.10294 1.22213 0.93377 0.91740 1.25747 0.94241 1.00287 1.04156 1.70811 1.40290 1.44166 1.03873 0.83165 0.75415 0.75989 0.73883 1.22159 1.22051 1.22059 1.21782 0.96223 0.98996 0.99071 1.21757 0.99340 0.94087 1.00512 1.45212 1.07054 1.04922 1.65712 1.21910 0.85240 0.93501 1.03523 1.16138 0.80838 0.84893 0.83127 1.91042 1.76519 1.16302 1.60498 0.90793 0.89319 0.89369 0.79215 0.76785 0.92176 0.92129 0.91701 0.92592 0.80071 0.93302 0.92027 0.91369 0.91655 0.91374 0.91288 0.89995 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.01 59.85 0.66 1.06 16 2 N -0.52 -4.21 3.12 -128.79 -0.40 -4.61 16 3 C 0.05 0.32 10.91 -16.34 -0.18 0.15 16 4 C -0.03 -0.30 6.88 -81.91 -0.56 -0.86 16 5 C 0.59 6.51 7.75 -12.87 -0.10 6.41 16 6 O -0.53 -7.80 14.49 5.18 0.08 -7.73 16 7 N -0.71 -6.26 5.06 -55.12 -0.28 -6.54 16 8 C 0.15 1.70 2.45 -67.93 -0.17 1.53 16 9 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 10 C -0.12 -1.67 5.49 -26.73 -0.15 -1.82 16 11 C -0.13 -2.28 5.50 -26.73 -0.15 -2.43 16 12 C 0.18 3.40 2.77 -67.93 -0.19 3.21 16 13 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 14 N -0.74 -17.92 5.12 -53.42 -0.27 -18.19 16 15 C -0.33 -9.06 9.93 -15.06 -0.15 -9.21 16 16 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 17 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 18 N -0.95 -29.08 13.70 55.49 0.76 -28.32 16 19 Si 1.08 25.88 29.92 -169.99 -5.09 20.79 16 20 H -0.30 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C -0.12 -1.79 5.39 -26.70 -0.14 -1.94 16 24 C -0.12 -1.26 5.39 -26.70 -0.14 -1.40 16 25 N -0.51 -5.78 3.21 -124.82 -0.40 -6.18 16 26 C 0.10 1.01 10.57 59.85 0.63 1.65 16 27 C 0.65 7.80 8.49 -87.07 -0.74 7.06 16 28 O -0.57 -8.64 17.59 5.17 0.09 -8.54 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.45 8.04 -51.93 -0.42 0.03 16 31 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.19 0.32 7.37 -52.48 -0.39 -0.06 16 33 H 0.40 2.08 7.45 -40.82 -0.30 1.77 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.37 9.24 6.63 -40.82 -0.27 8.96 16 39 H 0.26 7.72 6.78 -40.82 -0.28 7.45 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 46 H 0.10 1.09 6.45 -51.93 -0.33 0.76 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -37.22 375.43 -8.41 -45.63 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.08 Total: 6.08 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.47 Total: 1.96 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.60 Total: -63.85 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.17 Total: -16.27 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.09 Total: 20.79 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.22 -8.41 -45.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034798550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.599 kcal (2) G-P(sol) polarization free energy of solvation -37.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds